KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:45:12 2014 Check: 00 .. Name: ENSTTRP00000015572/1-691 Len: 704 Check: 1848 Weight: 1.00 Name: ENSP00000351132/1-691 Len: 704 Check: 4027 Weight: 1.00 Name: BACU013933/1-652 Len: 704 Check: 9448 Weight: 1.00 Name: ENSBTAP00000035196/1-631 Len: 704 Check: 7998 Weight: 1.00 Name: bmy_08848T0/1-496 Len: 704 Check: 6052 Weight: 1.00 // 1 50 ENSTTRP00000015572/1-691 ---------- ---MKKDVRI LLVGEPRVGK TSLIMSLVSE EFPEEVPPRA ENSP00000351132/1-691 ---------- ---MKKDVRI LLVGEPRVGK TSLIMSLVSE EFPEEVPPRA BACU013933/1-652 ---------- ---------- MDMVTARVGK TSLIMSLVSE EFPEEVPPRA ENSBTAP00000035196/1-631 MPAGRGRPLR AADMKKDVRI LLVGEPRVGK TSLIMSLVSE EFPEEVPPRA bmy_08848T0/1-496 ---------- ---------- ---------- ---------- ---MKVPPRA 51 100 ENSTTRP00000015572/1-691 EEITIPADVT PERVPTHIVD YSEAEQSDEQ LHQEISQANV ICIVYAVNNK ENSP00000351132/1-691 EEITIPADVT PERVPTHIVD YSEAEQSDEQ LHQEISQANV ICIVYAVNNK BACU013933/1-652 EEITIPADVT PERVPTHIVD YSEAEQSDEQ LHQEISQANV ICIVYAVNNK ENSBTAP00000035196/1-631 EEITIPADVT PERVPTHIVD YSEAEQSDEQ LHQEISQANV ICIVYAVNNK bmy_08848T0/1-496 EEITIPADVT PERVPTHIVD YSEAEQSDEQ LHQEISQANV ICIVYAVNNK 101 150 ENSTTRP00000015572/1-691 HSIDKVTSRW IPLINERTDK DSRLPLILVG NKSDLVEYSS METILPIMNQ ENSP00000351132/1-691 HSIDKVTSRW IPLINERTDK DSRLPLILVG NKSDLVEYSS METILPIMNQ BACU013933/1-652 HSIDKVTSRW IPLINERTDK DSRLPLILVG NKSDLVEYSS METILPIMNQ ENSBTAP00000035196/1-631 HSIDKVTSRW IPLINERTDK DSRLPLILVG NKSDLVEYSS METILPIMNQ bmy_08848T0/1-496 HSIDK----- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000015572/1-691 YTEIETCVEC SAKNLKNIXX XXXXXXXXXX XXXGPLYCPE EKEMKPACIK ENSP00000351132/1-691 YTEIETCVEC SAKNLKNISE LFYYAQKAVL HPTGPLYCPE EKEMKPACIK BACU013933/1-652 YTEIETCVEC SAKNLKNISE LFYYAQKAVL HPTGPLYCPE EKEMKPACIK ENSBTAP00000035196/1-631 YTEIETCVEC SAKNLKNISE LFYYAQKAVL HPTGPLYCPE EKEMKPACIK bmy_08848T0/1-496 ---------C SAKNLKNISE LFYYAQKAVL HPTGPLYCPE EKEMKPACIK 201 250 ENSTTRP00000015572/1-691 ALTRIFKISD QDNDGTLNDA ELNFFQRICF NTPLAPQALE DVKNVVRKHI ENSP00000351132/1-691 ALTRIFKISD QDNDGTLNDA ELNFFQRICF NTPLAPQALE DVKNVVRKHI BACU013933/1-652 ALTRIFKISD QDNDGTLSDA ELNFFQRICF NTPLAPQALE DVKNVVRKHI ENSBTAP00000035196/1-631 ALTRIFKISD QDNDGTLNDA ELNFFQRICF NTPLAPQALE DVKNVVRKHI bmy_08848T0/1-496 ALTRIFKISD QDNDGTLNDA ELNFFQRICF NTPLAPQALE DVKNVVRKHI 251 300 ENSTTRP00000015572/1-691 SDGVADSGLT LKGFLFLHTL FIQRGRHETT WTVLRRFGYD DDLDLTPEYL ENSP00000351132/1-691 SDGVADSGLT LKGFLFLHTL FIQRGRHETT WTVLRRFGYD DDLDLTPEYL BACU013933/1-652 SDGVADSGLT LKGFLFLHTL FIQRGRHETT WTVLRRFGYD DDLDLTPEYL ENSBTAP00000035196/1-631 SDGVADGGLT LKGFLFLHTL FIQRGRHETT WTVLRRFGYD DDLDLTPEYL bmy_08848T0/1-496 SDGVADSGLT LKGFLFLHTL FIQRGRHETT WTVLRRFGYD DDLDLTPEYL 301 350 ENSTTRP00000015572/1-691 FPLLKIPPDC TTELNHHAYL FLQSTFDKHD LDRDCALSPD ELKDLFKVFP ENSP00000351132/1-691 FPLLKIPPDC TTELNHHAYL FLQSTFDKHD LDRDCALSPD ELKDLFKVFP BACU013933/1-652 FPLLKIPPDC TTELNHHAYL FLQSTFDKHD LDRDCALSPD ELKDLFKVFP ENSBTAP00000035196/1-631 FPLLKIPPDC TTELNHHAYL FLQSTFDKHD LDRDCALSPD ELKDLFKVFP bmy_08848T0/1-496 FPLLKIPPDC TTELNHHAYL FLQSTFDKHD LDRDCALSPD ELKDLFKVFP 351 400 ENSTTRP00000015572/1-691 YIPWGPDVNN TVCTNEKGWI TYQGFLSQWT LTTYLDVQRC LEYLGYLGYS ENSP00000351132/1-691 YIPWGPDVNN TVCTNERGWI TYQGFLSQWT LTTYLDVQRC LEYLGYLGYS BACU013933/1-652 YIPWGPDVNN TVCTNEKGWI TYQGFLSQWT LTTYLDVQRC LEYLGYLGYS ENSBTAP00000035196/1-631 YIPWGPDVNN TVGTNEKGWI TYQGFLSQWT LTTYLDVQRC LEYLGYLGYS bmy_08848T0/1-496 YIPWGPDVNN TVCTNEKGWI TYQGFLSQWT LTTYLDVQRC LEYLGYLGYS 401 450 ENSTTRP00000015572/1-691 ILTEQESQAS AITVTRDKKI DLQKKQTQRN VFRCNVIGMK NCGKSGVLQA ENSP00000351132/1-691 ILTEQESQAS AVTVTRDKKI DLQKKQTQRN VFRCNVIGVK NCGKSGVLQA BACU013933/1-652 ILTEQESQAS AVTVTRDKKI DLQKKQTQRN VFRCNVIGMK NCGKSGILQA ENSBTAP00000035196/1-631 ILTEQESQAS AITVTRDKKI DLQKKQTQRN VFRCNVIGMK NCGKSGVLQA bmy_08848T0/1-496 ILTEQESQAS AITVTRDKKI DLQKKQTQRN VFRCNVIGMK NCGKSGVLQA 451 500 ENSTTRP00000015572/1-691 LLGRNLMRQK KIRDDHKSYY AINTVYVYGQ EKYLLLHDIS ESEFLTEAEI ENSP00000351132/1-691 LLGRNLMRQK KIREDHKSYY AINTVYVYGQ EKYLLLHDIS ESEFLTEAEI BACU013933/1-652 LLGRNLMRQK KIRDDHKSYY AINTVYVYGQ EKYLLLHDIS ESEFLTEAEI ENSBTAP00000035196/1-631 LLGRNLTRQK KIRDDHKSYY AINTVYVYGQ EKYLLLHDIS ESEFLTEAEI bmy_08848T0/1-496 LLGRNLMRQK KIRDDHKSYY AINTVYVYGQ EKYLLLHDIS ESEFLTEAEI 501 550 ENSTTRP00000015572/1-691 LCDVVCLVYD VSNPKSFEYC ARIFKQHFMD SRIPCLIVAA KSDLHEVRQE ENSP00000351132/1-691 ICDVVCLVYD VSNPKSFEYC ARIFKQHFMD SRIPCLIVAA KSDLHEVKQE BACU013933/1-652 LCDVVCLVYD VSNPKSFEYC ARIFKQHFMD SRIPCLIVAA KSDLHEVKQE ENSBTAP00000035196/1-631 LCDVVCLVYD VSNPKSFEYC ARIFKQHFMD SRIPCLIVAA KSDLHEVKQE bmy_08848T0/1-496 LCDVVCLVYD VSNPKSFEYC ARIFKQHFMD SRIPCLIVAA KSDLHEVKQE 551 600 ENSTTRP00000015572/1-691 YSISPTDFCR KHKMPPPQAF TCNTADAPSK DIFVKLTTMA MYPEDHYRDR ENSP00000351132/1-691 YSISPTDFCR KHKMPPPQAF TCNTADAPSK DIFVKLTTMA MYPEDHYRDR BACU013933/1-652 YSISPTDFCR KHKMPPPQAF TCNTADAPSK DIFVKLTTMA MYP------- ENSBTAP00000035196/1-631 YSISPTDFCR KHKMPPPQAF TCNTADAPSK DIFVKLTTMA MYP------- bmy_08848T0/1-496 YSISPTDFCR KHKMPPPQAF TCNTADAPSK DIFVKLTTMA MYP------- 601 650 ENSTTRP00000015572/1-691 LSRDMGHTDR IENLRKIWVF LKTAFHARLR CMCTCNRCTF CICQNFLNSD ENSP00000351132/1-691 LSRDMGHTDR IENLRKIWVF LKTAFHARLR CMCTCNRCTF CICQNFLNSD BACU013933/1-652 ---------- ---------- -----HARLR CMCTCNRCTF CICQNFLNSD ENSBTAP00000035196/1-631 ---------- ---------- ---------- ---------- ---------- bmy_08848T0/1-496 ---------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000015572/1-691 LLQSVKNKIF TAVLNRHVTQ ADLKSSTFWL RASFGATVFA VLGFAMYKAL ENSP00000351132/1-691 LLQSVKNKIF TAVLNRHVTQ ADLKSSTFWL RASFGATVFA VLGFAMYKAL BACU013933/1-652 LLQSVKNKIF TAVLNRHVTQ ADLKSSTFWL RASFGATVFA VLGFAMYKAL ENSBTAP00000035196/1-631 ---------- ------HVTQ ADLKSSTFWL RASFGATVFA VLGFAMYKAL bmy_08848T0/1-496 ---------- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000015572/1-691 LKQR ENSP00000351132/1-691 LKQR BACU013933/1-652 LKQR ENSBTAP00000035196/1-631 LKQR bmy_08848T0/1-496 ----