KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:45:13 2014 Check: 00 .. Name: ENSP00000440374/1-1125 Len: 1726 Check: 1650 Weight: 1.00 Name: ENSTTRP00000010498/1-1133 Len: 1726 Check: 6549 Weight: 1.00 Name: bmy_15911T0/1-1654 Len: 1726 Check: 9153 Weight: 1.00 Name: ENSBTAP00000035199/1-1136 Len: 1726 Check: 8041 Weight: 1.00 Name: BACU017400/1-714 Len: 1726 Check: 3923 Weight: 1.00 // 1 50 ENSP00000440374/1-1125 ---------- ---------- ---------- MRFWLRTEEM ALEEMVQRLN ENSTTRP00000010498/1-1133 MFGCWRFVLC KETGGDSGPP ARGPSEAKEE ESDPRVDVSD VIRLVQNQPG bmy_15911T0/1-1654 ---------- ---------- ---------- -------MLP LREASSRLPS ENSBTAP00000035199/1-1136 ---------- ---------- ---------- ---------- ----MVQRLN BACU017400/1-714 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000440374/1-1125 AVSKHTDEIM HQDIVPLCAA DIQDQLKKRF AYLSGGRGQD GSPVITFPDY ENSTTRP00000010498/1-1133 GTPTPADEIM HHDISPLCAA DIQDQLQKRF AYLSXXXXXX XXXXXXXXXX bmy_15911T0/1-1654 PADARAPPGA SRVFSPSCGR AFKSDF---V SWMNWGTPDA GMNVTVCPSV ENSBTAP00000035199/1-1136 AVSKRTDEIM HHDISPLCAA DIRDQLQKRF AYLSGGRGQD GSPVITFPDY BACU017400/1-714 ---------M HHDISPLCAA DIQDQLQKRF AYLSGGRGQD GSPVITFPDY 101 150 ENSP00000440374/1-1125 ---------P AFSEIPDKEF QNVMTYLTSI PSLQDAGI-- -------GFI ENSTTRP00000010498/1-1133 ---------X XXXXXXXXXX XXXXXXXXXX XXLQDAGI-- -------GFI bmy_15911T0/1-1654 SGQSEPWKAP TSSGKPCRWL DAFLARGAPC SVEQREGHRR PLEPVCPELF ENSBTAP00000035199/1-1136 ---------P AFGDVPDQDF QNVMTYLTSI PSLQDAGI-- -------GFI BACU017400/1-714 ---------P AFGDVPDKDF QNVMTYLTSI PSLQDAGI-- -------GFI 151 200 ENSP00000440374/1-1125 LVIDRRRDK- ---------- -------WTS VKASVLRIAA SF-------- ENSTTRP00000010498/1-1133 LVIDRRQDK- ---------- -------WTS VKASILRIAA SF-------- bmy_15911T0/1-1654 PEMDGREGPS SSGTLSVALS SFQPAGCWHR VHPGHRPQAG QMDLGQGVHP ENSBTAP00000035199/1-1136 LVIDRRQDR- ---------- -------WTS VKASILRIAA SF-------- BACU017400/1-714 LVIDRRQDK- ---------- -------WTS VKASILRIAA SF-------- 201 250 ENSP00000440374/1-1125 --PANLQLVL VLRPTGFFQR TLSDIAFKFN RDDFKMKVPV IMLSSVPDLH ENSTTRP00000010498/1-1133 --PANLQLVL VLRPTGFFQR TLSDLAFRFN RDDFKM-VPV IMLSSVPELH bmy_15911T0/1-1654 ENSANLQLVL VLRPTGFFQR TLSDLAFRFN RDDFKMKVPV IMLSSVPELH ENSBTAP00000035199/1-1136 --PANLQLVL VLRPTGFFQR TLSDLAFRFN RDDFKMKVPV IMLSSVPELH BACU017400/1-714 --PANLQLVL VLRPTGFFQR TLSDLAFRFN RDDFKMKVPV IMLSSVPELH 251 300 ENSP00000440374/1-1125 GYIDKSQLTE DLGGTLDYCH SRWLCQRTAI ESFALMVKQT AQMLQSFGTE ENSTTRP00000010498/1-1133 SYIDKSQLTE DLGGTLDYCH SRWLCHRTAI ESFALLVKQT AQMLQAFGTE bmy_15911T0/1-1654 SYIDKSQLTE DLGGTLDYCH SRWLCHRTAI ESFALLVKQT AQMLQAFGTE ENSBTAP00000035199/1-1136 GYIDKSQLTE DLGGTLAYCH SRWLRHRTAI ESFALLVKQT AQMLQTFGTE BACU017400/1-714 SYIDKSQLTE DLGGTLDYCH SRWLCHRTAI ESFALRVKQT AQMLQAFGTE 301 350 ENSP00000440374/1-1125 LAETELPNDV QSTSSVLC-A HTEKKDKAKE DLRLALKEGH SVLESLRELQ ENSTTRP00000010498/1-1133 LAETELPNDV QSTSSVLRXX XXXXXXXXXE DMRLALDEGR SVLESIREPL bmy_15911T0/1-1654 LAETELPNDV QSTSSVLR-A HTEKKDRAKE DMRLALDEGR SVLESIREPL ENSBTAP00000035199/1-1136 LAETELPNDV QSTSSVLL-A HTEKKDRAKE DMRLALVEGR RVLESIHEPL BACU017400/1-714 LAETELPNDV QSTSSVLR-A HTEKKDRAKE DMRLALDEGR SVLESIREPL 351 400 ENSP00000440374/1-1125 AEGSEPSVNQ DQLDNQATVQ RLLAQLNETE AAFDEFWAKH QQKLEQCLQL ENSTTRP00000010498/1-1133 ARGPEQSPNQ DQLDSQSTVQ RLLAQLSETE AAFDEFWAKH QRKLEQCLQL bmy_15911T0/1-1654 ARGPEQSPNQ DQLDSQSTVQ RLLAQLNETE AAFDEFWAKH QQKLEQCLQL ENSBTAP00000035199/1-1136 ARSPDQSPNQ DQLDSQSTVH RLLAQLNETE AAFDEFWAKH QQKLEQCLQL BACU017400/1-714 ARGPEQSPNQ DQLDSQSTVQ RLLAQLNETE AAFDEFWAKH QQKLEQCLQL 401 450 ENSP00000440374/1-1125 RHFEQGFREV KAILDAASQK IATFTDIGNS LAHVEHLLRD LASFEEKSGV ENSTTRP00000010498/1-1133 RHFEQDFREV KAALDVLAQK ITTFTDVGNS LAHVQHLLKD LASFEEKSSX bmy_15911T0/1-1654 RHFEQDFREV KAALDVLAQK ITTFTDVGNS LAHVEHLLKD LASFEEKSSA ENSBTAP00000035199/1-1136 RHFEQDFREV KSALDVLAQK VTTFTDVGNS LAHVQHLLKD LTSFEEKSSA BACU017400/1-714 RHFEQDFREV KAALDVLAQK ITTFTDVGNS LAHVEHLLKD LASFEEKSSA 451 500 ENSP00000440374/1-1125 AVERARALSL DGEQLIGNKH YAVDSIRPKC QELRHLCDQF SAEIARRRGL ENSTTRP00000010498/1-1133 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXLCGQF AADVGRRRGL bmy_15911T0/1-1654 VVQRARALSL EGERLIELKH YAVDSIRPKC HELRQLCDQF AADVGRRRGL ENSBTAP00000035199/1-1136 AVQRARTLSQ EGERLIEHKH YAVDSIRPKC HELRHLCDQF AADVERRRGL BACU017400/1-714 VVQRARALSL EGERLIGLKH YAVDSIRPKC HELRQLCEQL AADVGRRRGL 501 550 ENSP00000440374/1-1125 LSKSLELHRR LETSMKWCDE GIYLLASQPV DKCQSQDGAE AALQEIEKFL ENSTTRP00000010498/1-1133 LGRALDLHGL LEASMKWCDE GIYLLASQPV DKCQAQDGAE AALQEVEKFL bmy_15911T0/1-1654 LGRSLDLHGL LEASMKWCDE GIYLLASQPV DKCQSQDGAE AALQEIEKFL ENSBTAP00000035199/1-1136 LGKSLELHGL LEASMKWCDE GIYLLASQPV DKC------- ---------- BACU017400/1-714 LGRSLDLHGL PEASMKWCDE GIYLLASQPV DKCQSQDGAE AALQEIEKFL 551 600 ENSP00000440374/1-1125 ETGAENKIQE LNAIYKEYES ILNQDLMEHV RKVFQKQASM EEVFHRRQAS ENSTTRP00000010498/1-1133 ETRAENKIQE LSKIYQDYEP ILTRDLLEHV QKVFRKQESV EEMFHRRQAS bmy_15911T0/1-1654 ETGAENKIQE LSRIYQDYEP ILTRDLLEHV QKVFRKQESV EEMFHRRQAS ENSBTAP00000035199/1-1136 --------QE LSKIFQDYEP ILTKDLLEHV QRVFQKQESV EEMFHRRQAS BACU017400/1-714 ETGAENKIQE LSRIYQDYEP ILTRDLLEHV QKVFRKQESV EEMFHRRQAS 601 650 ENSP00000440374/1-1125 LKKLAARQTR PVQPVAPRPE ALAKSPCPSP GIRRGSENSS SEGGALRRGP ENSTTRP00000010498/1-1133 LKKLAAKQTR PVQPVAPRPE APAKSPCPSP GIRRGSEIHS SEGSVLRRGP bmy_15911T0/1-1654 LKKLAAKQTR PVQPVAPRPE APTKSPCSSP GIRRGSENXS SEGSVLRRGP ENSBTAP00000035199/1-1136 LKKLAAKQTR PVQPVAPRPE ALTKSPCPSP GIRRGSENHS SEGSALRRGP BACU017400/1-714 LKKLAAKQTR PVQPVAPRPE APTKSPCPSP GIRRGSENHS SEGSVLRRGP 651 700 ENSP00000440374/1-1125 YRRAKSEMSE SRQGRGSAGE EEESLAILRR HVMSELLDTE RAYVEELLCV ENSTTRP00000010498/1-1133 YRRARSEVSE GRQGRGRSTG DEESLAVLRR HVMNELLDTE RVYVEELLCI bmy_15911T0/1-1654 YRRAKSEVSE GRQGRGRSTG DEESLAILRR HVMNELLDTE RVYVEELLCI ENSBTAP00000035199/1-1136 YRRAKSEVSE GRQGRGGSTG DEESLAVLRR HVMKELLDTE RVYVEELLCV BACU017400/1-714 YRRGPGEVSE GRQGRGRSTG DEESLAILRR HVMNELLDTE RVYVEELLCI 701 750 ENSP00000440374/1-1125 LEGYAAEMDN PLMAHLLSTG LHNKKDVLFG NMEEIYHFHN RIFLRELENY ENSTTRP00000010498/1-1133 LEGYAAEMDN PLMTHLISTG LQNKKDVLFG NMEEIYHFHN RIFLRELENY bmy_15911T0/1-1654 LEGYAAEMDN PLMTHLISTG LQNKKDVLFG NMEEIYHFHN RIFLRELENY ENSBTAP00000035199/1-1136 LEGYAAEMDN PLMTHLISTG LQNKKDILFG NMEEIYHFHN RIFLRELENY BACU017400/1-714 LEGYAAEMDN PLMTHLISTG LQNKKDVLFG NMEEIYHFHN RIFLRELENY 751 800 ENSP00000440374/1-1125 TDCPELVGRC FLERMEDFQI YEKYCQNKPR SESLWRQCSD CPFFQECQRK ENSTTRP00000010498/1-1133 IDCPELVGRC FLERMEQFQV YEKYCQNKPR SESLWRQCSD CPFFQECQKK bmy_15911T0/1-1654 IDCPELVGRC FLER------ ---------- ---------- -----ECQKK ENSBTAP00000035199/1-1136 TDCPELVGRC FLERMEEFQI YEKYCQNKPR SESLWRQCSD CPFFQECQKK BACU017400/1-714 IDCPELVGRC FLERVEELQI YEKYCQNKPR SESLWRQCSD CPFFQVC--- 801 850 ENSP00000440374/1-1125 LDHKLSLDSY LLKPVQRITK YQLLLKEMLK YSRNCEGAED LQEALSSILG ENSTTRP00000010498/1-1133 LDHKLSLDSY LLKPVQRITK YQLLLKEMLK YSKSCEGAED LQEALSSILG bmy_15911T0/1-1654 LDHKLSLDSY LLKPVQRITK YQLLLKEMLK YSKSCEGAED LQEALSSILG ENSBTAP00000035199/1-1136 LDHKLSLDSY LLKPVQRITK YQLLLKEMLK YSKSCEGAED LQEALSSILG BACU017400/1-714 ---------- ---------- ---------- ---------- -------LLA 851 900 ENSP00000440374/1-1125 ILKAVNDSMH LIAITGYDGN LGDLGKLLMQ GSFSVWTDHK RGHTKVKELA ENSTTRP00000010498/1-1133 ILKAVNDSMH LIAITGYEGN LSDLGKLLMQ GSFSVWTDHK KGHTKVKDLA bmy_15911T0/1-1654 ILKAVNDSMH LIAITGYEGN LSDLGKLLMQ GSFSVWTDHK KGHAKVKDLA ENSBTAP00000035199/1-1136 ILKAVNDSMH LIAITGYEGN LSDLGRLLMQ GSFSVWTDHK RGHAKVKDLA BACU017400/1-714 LL-------- -------SGD VPLLGE---- ---------- ---------- 901 950 ENSP00000440374/1-1125 RFKPMQRHLF LHEKAVLFCK KREENGEGYE KAPSYSYKQS LNMAAVGITE ENSTTRP00000010498/1-1133 RFKPMQRHLF LHEKAVLFCK KREENGEGYE KAPSYSFKQS LNMTAVGITE bmy_15911T0/1-1654 RFKPMQRHLF LHEKAVLFCK KREENGEGYE KAPSYSFKQS LNMTAVGITE ENSBTAP00000035199/1-1136 RFKPMQRHLF LHEKAVLFCK RREENGEGYE KAPSYSYKQS LNMTAVGITE BACU017400/1-714 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000440374/1-1125 NVKGDAKKFE IWYNAREEVY IVQAPTPEIK AAWVNEIRKV LTSQLQACRE ENSTTRP00000010498/1-1133 NVKGDAKKFE IWYNAREEVY IVQAPTPEIK AAWVSEIRKV LTSQLQACRE bmy_15911T0/1-1654 NVKGDAKKFE IWYNAREEVY IVQAPTPEIK AAWVSEIRKV LTSQLHACRE ENSBTAP00000035199/1-1136 NVKGDAKKFE IWYNAREEVY IIQAPTPEIK AAWVSEIRKV LTSQLQACRE BACU017400/1-714 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000440374/1-1125 ASQHRALEQS QSLPLPAPTS TSPSRGNSRN IKKLEERKTD PLSLEGYVSS ENSTTRP00000010498/1-1133 ASQHRALEQS HSLPLPAPAG TSPSKGNTKD VRKLEERKTD PLTLEGYVGP bmy_15911T0/1-1654 ASQHRALEQS HSLPLPVPAG TSPSKGNTKN VRKLEERKMD PLNLEGYVGP ENSBTAP00000035199/1-1136 ASQHRALEQS QSLPLPTPAG TSPSKASTRN IKKLEERKTD PLSLEGYGGP BACU017400/1-714 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000440374/1-1125 APLTKPPEKG K--------- ---------- ---------- ---------- ENSTTRP00000010498/1-1133 APLPRPPEKG R--------- ---------- ---------- ---------- bmy_15911T0/1-1654 APLPRPPEKG RDDAVTSSTS ESSALSKKRF TLQSFAALKG QKGKGARPRL ENSBTAP00000035199/1-1136 TPQQRAPEKG KDDAVTSSTS ESSALSKKRF TLQSFAALKA QKASPTSPD- BACU017400/1-714 -PQAR----- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000440374/1-1125 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010498/1-1133 ---------- ---------- ---------- ---------- ---------- bmy_15911T0/1-1654 AGGLLGGSRP WLSVIHPCRA HPCGRSREGH LPLAWATRDA SATESLSFPD ENSBTAP00000035199/1-1136 ---------- ---------- ---------- ---------- ---------- BACU017400/1-714 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000440374/1-1125 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010498/1-1133 ---------- ---------- ---------- ---------- ---------- bmy_15911T0/1-1654 AGVSVIRAAR ALLAGPFLCR GGAPPFPTFS RGVPEGIAPP ARVRGVHFPL ENSBTAP00000035199/1-1136 ---------- ---------- ---------- ---------- ---------- BACU017400/1-714 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000440374/1-1125 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010498/1-1133 ---------- ---------- ---------- ---------- ---------- bmy_15911T0/1-1654 GVSSAQPGSE HPMEISKSLP GLLALTSNKQ TKRRTNPGPY TLLGLASMRT ENSBTAP00000035199/1-1136 ---------- ---------- -----KKAKR HQVKSDPTPF ---------- BACU017400/1-714 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000440374/1-1125 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010498/1-1133 ---------- ---------- ---------- ---------- ---------- bmy_15911T0/1-1654 GHALCGAQKT NQGAAYLKPR CRRRAIARPS HPPALLGAPP PTSGSLRQLS ENSBTAP00000035199/1-1136 ---------- ---------- ---------- ---------- ---------- BACU017400/1-714 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000440374/1-1125 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010498/1-1133 ---------- ---------- ---------- ---------- ---------- bmy_15911T0/1-1654 CVPKKLLSES LESSLWPRTS PPVNRGSLRG PGRPGVTKTQ SRPSTQLSSE ENSBTAP00000035199/1-1136 ---------- ---------- ---------- ---------- ---------- BACU017400/1-714 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSP00000440374/1-1125 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010498/1-1133 ---------- ---------- ---------- ---------- ---------- bmy_15911T0/1-1654 GLHASVSRGC PSAQGAASSF CPRCPPSDTC FRLAGSPVSL GAGLEGWTFV ENSBTAP00000035199/1-1136 ---------- ---------- ---------- ---------- ---------- BACU017400/1-714 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSP00000440374/1-1125 ---------- ---------- ---------- ----GWSKTS HSLEAPEDDG ENSTTRP00000010498/1-1133 ---------- ---------- ---------- ----GWSKTS NPPEAPEDND bmy_15911T0/1-1654 ASCPAPGPLV TPTRRPSELP APGGYGRAEA GGEGGWSKTS HPSEAPEDND ENSBTAP00000035199/1-1136 ---------- ---------- ---------- -GLRGWSKTS HPSETPEDND BACU017400/1-714 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSP00000440374/1-1125 GWSSAEEQIN SSDAEEDGGL GPKKLVPGKY TVVADHEKGG PDALRVRSGD ENSTTRP00000010498/1-1133 GWSSAEEPVN SSDAEEEGRA GLRKLVPGKY TVTGLDEKGG PDALVLRSGD bmy_15911T0/1-1654 GWSSAEEPIN SSDAEEEGRV GLRKLVPGKY TVTGLHEKGG PDALVLRSGD ENSBTAP00000035199/1-1136 GWSSTEEPVN SSDAEEEGRA GPGKLVPGRY TVTRLDEKGV SDVLALRSGD BACU017400/1-714 ---------- ---------- ---------- ---------- ------RSGS 1501 1550 ENSP00000440374/1-1125 VVELVQEGDE GLWYVRDPTT GKEGWVPASS LSVRLGPSGS AQCLSSSESS ENSTTRP00000010498/1-1133 EVELVQEGDE GLWFVRNVSS GGEGWLPARN LSALLGQRGA PGCLSSP--- bmy_15911T0/1-1654 EVELVQEGNE GLWFVRNLSS GGEGWLPARN LSSLLGQRGA PGCLSSPARR ENSBTAP00000035199/1-1136 EVELVQEGDE GLWCVRNLSS GVEGWVPARS LSTLLCQGGP VGCLSSP--- BACU017400/1-714 V--------- ---------- ---------- ---------- ---------- 1551 1600 ENSP00000440374/1-1125 P--------- ---------- ---------- -------GSA VLSNSSSCSE ENSTTRP00000010498/1-1133 ---------- ---------- ---------- -------GTG REA------- bmy_15911T0/1-1654 PAAARAARPP SRTCRGSAAA TPPAALGAGL CSGRRGVGRG RHPRNRPRNP ENSBTAP00000035199/1-1136 ---------- ---------- ---------- -------GWG HLPTELCPEP BACU017400/1-714 ---------- ---------- ---------- ---------- ---------- 1601 1650 ENSP00000440374/1-1125 GGQAPFSDLQ G--------- ---------- ---------- ---------- ENSTTRP00000010498/1-1133 ---------- ---------- ---------- ---------- ---------- bmy_15911T0/1-1654 GAAAAPDEGS GRVRPAASAP GPRPTAQEER GTAASSGSRT DGAADDRPPV ENSBTAP00000035199/1-1136 SAAAAPEDG- ---------- ---------- ---------- ---------- BACU017400/1-714 ---------- ---------- ---------- ---------- ---------- 1651 1700 ENSP00000440374/1-1125 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010498/1-1133 ---------- ---------- ---------- ---------- ---------- bmy_15911T0/1-1654 QKGSRDSPSA SAAAAPLWFP TFLVRCFLQE HAFCGAASKR SDRFTDPAAW ENSBTAP00000035199/1-1136 ---------- ---------- ---------- ---------- ---------- BACU017400/1-714 ---------- ---------- ---------- ---------- ---------- 1701 1750 ENSP00000440374/1-1125 ---------- ---------- ------ ENSTTRP00000010498/1-1133 ---------- ---------- ------ bmy_15911T0/1-1654 DGGRRLVCLL HIFFLKQGLI LRPSFW ENSBTAP00000035199/1-1136 ---------- ---------- ------ BACU017400/1-714 ---------- ---------- ------