KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:45:17 2014 Check: 00 .. Name: ENSP00000230771/1-506 Len: 543 Check: 8965 Weight: 1.00 Name: ENSBTAP00000035214/1-506 Len: 543 Check: 8071 Weight: 1.00 Name: ENSTTRP00000001673/1-506 Len: 543 Check: 6262 Weight: 1.00 Name: bmy_07850T0/1-494 Len: 543 Check: 9306 Weight: 1.00 Name: BACU018532/1-506 Len: 543 Check: 5486 Weight: 1.00 // 1 50 ENSP00000230771/1-506 ---------- ---------- ---------- -------MPL LGLLPRRAWA ENSBTAP00000035214/1-506 ---------- ---------- ---------- -------MPQ LGLLPGRAWT ENSTTRP00000001673/1-506 ---------- ---------- ---------- -------MPQ LGLLHGRAWA bmy_07850T0/1-494 MVLGVRLYSA LYPSWGPVCL LPRSFASCSG NPASCCTMPQ LGLLHGRAWA BACU018532/1-506 ---------- ---------- ---------- -------MPQ LGLLHGRAWA 51 100 ENSP00000230771/1-506 SLLSQLLRPP CASCTGAVRC QSQVAEAVLT SQLKAHQEKP NFIIKTPKGT ENSBTAP00000035214/1-506 VLLGLLRPPP GALCIRAVRS HSQVAEALIA SQLKPHQEKS NFTIKTPKGT ENSTTRP00000001673/1-506 VLFGQLRRPP GAVCIRAVHS HSQVAEAALA TQLKPHQEKS NFIIKTPKGT bmy_07850T0/1-494 VLFGQLRRPP GAVCIGAVHS HSQVAEAALA TQLKPHQEKS NFIIKTPKGT BACU018532/1-506 VLFGQLRRPP GAVCIGAVHS HSQVAEAALA TQLKPHQEKS NFIIKTPKGT 101 150 ENSP00000230771/1-506 RDLSPQHMVV REKILDLVIS CFKRHGAKGM DTPAFELKET LTEKYGEDSG ENSBTAP00000035214/1-506 RDLSPQQMVV REKILDVVVS CFKRHGAKGL DTPAFELKEI LTEKYGEDSG ENSTTRP00000001673/1-506 RDLSPEQMVV REKILDMVVS CFKRHGAKGL DTPAFELKEM LTEKYGEDSG bmy_07850T0/1-494 RDLSPQQMVV REKIIDMVVS CFKRHGAKGL DTPAFELKEM LTEKYGEDSG BACU018532/1-506 RDLSPQQMVV REKIIDMVVS CFKRHGAKGL DTPAFELKEM LTEKYGEDSG 151 200 ENSP00000230771/1-506 LMYDLKDQGG ELLSLRYDLT VPFARYLAMN KVKKMKRYHV GKVWRRESPT ENSBTAP00000035214/1-506 LIYDLKDQGG ELLSLRYDLT VPFARYLAMN KVKKMKRYHV GKVWRRESPT ENSTTRP00000001673/1-506 LVYDLKDQGG ELLSLRYDLT VPFARYLAMN KVKKMKRYHV GKVWRRESPT bmy_07850T0/1-494 LIYDLKDQGG ELLSLRYDLT VPFARYLAMN KVKKMKRYHV GKVWRRESPT BACU018532/1-506 LIYDLKDQGG ELLSLRYDLT VPFARYLAMN KVKKMKRYHV GNVWRRESPT 201 250 ENSP00000230771/1-506 IVQGRYREFC QCDFDIAGQF DPMIPDAECL KIMCEILSGL QLGDFLIKVN ENSBTAP00000035214/1-506 IVQGRYREFY QCDFDIAGQF DPMIPDAECL KIMCEILSGL HLGDFLIKVS ENSTTRP00000001673/1-506 IAQGRYREFC QCDFDIAGQF DPMIPDAECL KIMCEILSGL QLGDFLIKVN bmy_07850T0/1-494 IVQGRYREFC QCDFDIAGQF DPMIPDAECL KIMCEILSGL QLGDFLIKVN BACU018532/1-506 IVQGRYREFC QCDFDIAGQF DPMIPDAECL KIMCEILSGL QLGDFLIKVN 251 300 ENSP00000230771/1-506 DRRIVDGMFA VCGVPESKFR AICSSIDKLD KMAWKDVRHE MVVKKGLAPE ENSBTAP00000035214/1-506 DRRILDGIFA VCGVPESKFH AICSSVDKLD KISWKDVRHE MVVKKGLAPE ENSTTRP00000001673/1-506 DRRILDGIFA VCGVPESKFH AICSSVDKLD KMSWKDVRHE MVAKKGLAAE bmy_07850T0/1-494 DRRILDGIFA VCGVPESKFH AICSSVDKLD KISWKDVRHE MVAKKGLAAE BACU018532/1-506 DRRILDGIFA VCGVPESKFH AICSSVDKLD KMSWKDVRHE MVAKKGLAAE 301 350 ENSP00000230771/1-506 VADRIGDYVQ CHGGVSLVEQ MFQDPRLSQN KQALEGLGDL KLLFEYLTLF ENSBTAP00000035214/1-506 VADRIGDYVQ CHGGISLVEQ MFQDPRLSQN KQALEGLGDL KLLFEYLTLF ENSTTRP00000001673/1-506 VADRIWDYVQ CHGGVSLVQQ MFQDPRLSQN KQALEGLGDL KLLFEYLTLF bmy_07850T0/1-494 IADRIGDYVQ CHGGVSLVEQ MFQDPRLSQN KQALEGLGDL KLLFEYLTLF BACU018532/1-506 MADRIGDYVQ CHGGVSLVEQ MFQDPRLSQN KQALEGLGDL KLLFEYLTLF 351 400 ENSP00000230771/1-506 GIADKISFDL SLARGLDYYT GVIYEAVLLQ TPTQAGEEPL NVGSVAAGGR ENSBTAP00000035214/1-506 GVAEKVSFDL SLARGLDYYT GVIYEAVLLQ TPVHAEEEPL NMGSVAAGGR ENSTTRP00000001673/1-506 GIAEKISFDL SLARGLDYYT GVIYEAVLLQ TPAHAEEEPR NVGSVAAGGR bmy_07850T0/1-494 GIAEKITFDL SLARGLDYYT GVIYEAVLLQ TPAHAEEEPL NVGSVAAGGR BACU018532/1-506 GIAEKISFDL SLARGLDYYT GVIYEAVLLH TPAHAEEEPL NVGSVAAGGR 401 450 ENSP00000230771/1-506 YDGLVGMFDP KGHKVPCVGL SIGVERIFYI VEQRMKTKGE KVRTTETQVF ENSBTAP00000035214/1-506 YDGLVGMFDP RGHKVPCVGL SIGVERIFSI VEQRIKTFGE KIRTTETQVF ENSTTRP00000001673/1-506 YDGLVGMFDP KGHNVPCVGL SIGVERIFSI VEQRMKTFGE KIRTTETQVF bmy_07850T0/1-494 YDGLVGMFDP KGHKVPCVGL SIGIERIFSI VEQRMKTFGE NIRTTETQVF BACU018532/1-506 YDGLVGMFDP KGHKVPCVGL SIGVERIFSI VEQRMKTFGE NIRTTETQVF 451 500 ENSP00000230771/1-506 VATPQKNFLQ ERLKLIAELW DSGIKAEMLY KNNPKLLTQL HYCESTGIPL ENSBTAP00000035214/1-506 VATPQKNFLQ ERLKLIAELW DAGIKAELMY KNNPKLLPQL HYCENMGIPL ENSTTRP00000001673/1-506 VATPQKNFLQ ERLKLIAELW DAGIKAELMY KNNPKLLTQL HYCENTGIPL bmy_07850T0/1-494 VATPQKNFLQ ERLKLIAELW DAGIK----- ---------- ---------- BACU018532/1-506 VATPQKNFLQ ERLKLIAELW DAGIKAELMY KNNPKLLTQL HYCENMGIPL 501 550 ENSP00000230771/1-506 VVIIGEQELK EGVIKIRSVA SREEVAIKRE NFVAEIQKRL SES ENSBTAP00000035214/1-506 VVIIGEQELK EGVIKLRSVA SREEVAIKRE NLVAEIQKRL SES ENSTTRP00000001673/1-506 VVIIGEQELK EGVIKLRSVA NREEVAITRE NLVAEIQKRL SES bmy_07850T0/1-494 ---------- ---------- ----VAITRE NLVAEIQKRL SES BACU018532/1-506 VVIIGEQELK EGVIKLRSVA SREEVAITRE NLVAEIQKRL SES