KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:45:18 2014 Check: 00 .. Name: ENSBTAP00000035229/1-348 Len: 600 Check: 3506 Weight: 1.00 Name: ENSTTRP00000002359/1-514 Len: 600 Check: 654 Weight: 1.00 Name: bmy_02906T0/1-535 Len: 600 Check: 6860 Weight: 1.00 Name: BACU013956/1-540 Len: 600 Check: 317 Weight: 1.00 // 1 50 ENSBTAP00000035229/1-348 ----KMTICI VLDANYPELV LDVGKVTLGE KNRKKMKDSQ LRKKQNESLS ENSTTRP00000002359/1-514 ---------- ---------- ---------- ---------- ---------- bmy_02906T0/1-535 MASRRMTVRV VLDTNYAELV LDVGKVTFGE KNRKKMKDSQ LRKKQNENVS BACU013956/1-540 -----MTVRV VLDTNYAELV LDVGKVTFGE KNRKKMKDCQ LRRKQNENVS 51 100 ENSBTAP00000035229/1-348 KCVITLLNSG GGISKIEIEN EDYSYEKDGI GLDLEHSLAD MVPIVHKYFD ENSTTRP00000002359/1-514 ---------- ---------- ---------- GLDLENSFSN IVSFVSKYLD bmy_02906T0/1-535 QSVVALLNSG GGVCRADIEN ENYSYEKDGI GLDLENSFAN IVSFVSKYLD BACU013956/1-540 QSVVALLNSG GGVCRAEIEN ENYSYEKDGI GLDLENSFAN IVSFVSKYLD 101 150 ENSBTAP00000035229/1-348 FMKQGKYFLI FVKSWSSKIP GMKIATLSSN LYKRDITSVN VMNATVALEF ENSTTRP00000002359/1-514 FMQRGKYFLI FVKSWSSETS GLRIATLSSN LYKRDITSVK VMNATAALEF bmy_02906T0/1-535 FMQQGKYFLI FVKSWSSETS GLRIATLSSN LYKRDITSVK VMNATAALEF BACU013956/1-540 FMQQGKYFLI FVKSWSSETS GLRIATLSSN LYKRDITSVK VMNATAALEF 151 200 ENSBTAP00000035229/1-348 LKDRVETRER FSLTSKSSSK RCR-EETEES STKALASDFF NRTQLRYREK ENSTTRP00000002359/1-514 LKDRLEAGEG FSLIPKSSPK RYRFDVQEES SMKALAADFF NRMQLRYREK bmy_02906T0/1-535 LKDRLGNGEG FSLIPKSPPK RYRFDVQEES SMKALAADFF NRMQLRYREK BACU013956/1-540 LKDRLETGEG FSLIPKSPPK RYHFDVQEES SMKALAADFF NRMQLRYGEK 201 250 ENSBTAP00000035229/1-348 LTFTESTYVE IKDFSTQKLL QRIKEILPQY VSAFANTRGG YLFVGLSEKK ENSTTRP00000002359/1-514 LTFTESTHVE MKDYSTEKLL QRIKDILPQY VSAFSNTHGG YLFIGLSEKN bmy_02906T0/1-535 LTFTESTHVE MKDYSTEKLL QRIKEILPQY VSAFANTHGG YLFIGLSEEK BACU013956/1-540 LTFTESTHVE MKDYSTEKLL QRIKEILPQY VSAFANTHGG YLFIGLSEEK 251 300 ENSBTAP00000035229/1-348 QEVIGFKAEK SDLDKIEREI EKCISELPVY HFCMEKKKIN YLCKFLEVYD ENSTTRP00000002359/1-514 QEVTGFKAEK SDLDKIEKEI EQCISKFPVY HFCIEKKKIN YSCKFLEVYD bmy_02906T0/1-535 QEVTGFKAEK SDLDKIEKEI EQCISKFPVY HFCIEKKKIN YSCKFLEVYD BACU013956/1-540 QEVTGFKAEK SDLDKIEKEI EQCISKFPVY HFCIEKKKIN YSCKFLEVYD 301 350 ENSBTAP00000035229/1-348 EESLCGYVCM LKIEPFCCAV FAKKPDSWHV KDNQVKQLSV EEWVQLMMDP ENSTTRP00000002359/1-514 EGSLCGYVCA LKIELFCCAV FAKKPDSWHV KDNQVMQLTV EEWCQLMLDP bmy_02906T0/1-535 EGSLCGYVCA LKIELFCCAV FAKKPNSWHV KDNQVMQLTA EEWGQLMLDP BACU013956/1-540 EGSLCGYVCA LKIELFCCAV FAKKPNSWHV KDNQVMQLTV EEWGQLMLDP 351 400 ENSBTAP00000035229/1-348 EPG------- ---------- ---------- ---------- ---------- ENSTTRP00000002359/1-514 EPNFSRSFEE MKLQQSMSSP IPLDWSLYKY KNLESQEQRY HLTVPSEKVT bmy_02906T0/1-535 EPK------- ---------- ---------- ---------- ---------- BACU013956/1-540 EPM------- ---------- ---------- ---------- ----PSEKVT 401 450 ENSBTAP00000035229/1-348 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002359/1-514 YVPEILYEKL FSQHKGLAQL IHNEIGSVRQ GTLIFSKSWS LDLGLQENQK bmy_02906T0/1-535 ----ILYEKL FSQHKGLAQL IRNEIGSVRQ GTLIFSKSWS LDLGLQENQK BACU013956/1-540 YVPEILYEKL FSQHKGLAQL IHNEIGSIRQ GTLIFSKSWS LDLGLQENQK 451 500 ENSBTAP00000035229/1-348 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002359/1-514 VICDALLIAQ DRPPVLYTFL REPYKELKGY SIQTALTLKK KLVKIGGYSG bmy_02906T0/1-535 VICDALLIAQ DRPPVLYTFL RELNKELKGY SIQTALTLKK KLVKIGGYSG BACU013956/1-540 VICDALLIAQ DRPPVLYTFL RELNKELKGY SIQTALTLKK KLVKIGGYSG 501 550 ENSBTAP00000035229/1-348 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002359/1-514 KVCVMTKIFY ------LTEG NIKLLHDSSS SAIYPKSYTL ITTQTMSDLK bmy_02906T0/1-535 KVCVMTKIYW SEESSTLTEG NTRLLHDSSL SAIYPKSYTL ITTQTMSDLK BACU013956/1-540 KVCVMTKIYW SEESSTLTEG NTRLLHDSSL SAIYPKSYTL ITTQTMSDLK 551 600 ENSBTAP00000035229/1-348 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002359/1-514 KALFIVLKRL RPLNDQFDSE ISQHSQIISM DYFQRNEKRM FKYCLRLTEP bmy_02906T0/1-535 KALFIVLKTL GTLNDQFDSE IFQH------ --LSDNQ--- --YGL-LSEE BACU013956/1-540 KALFIVLKRL GTLNDQFDSE IFQH------ --LSDNQ--- --YGL-LSEE