KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:45:18 2014  Check: 00 ..

 Name: ENSTTRP00000005946/1-126  Len:    227  Check:  6173  Weight:  1.00
 Name: ENSBTAP00000035234/1-224  Len:    227  Check:  3544  Weight:  1.00
 Name: bmy_01379T0/1-225         Len:    227  Check:  7073  Weight:  1.00
 Name: ENSP00000365200/1-227     Len:    227  Check:  4662  Weight:  1.00

//


                          1                                                   50
ENSTTRP00000005946/1-126  ---------- ---------- ---------- ---------- ---------- 
ENSBTAP00000035234/1-224  MSHTEVKLKV PFGNKLLDAV CLVPNKSLTY GVILTHGASG DMNLPHLTSL 
bmy_01379T0/1-225         MSHTEVKLKI PFGNKLLDAV CLVPNKSLTY GIILTHGASG DMNLPHLMSL 
ENSP00000365200/1-227     MSHTEVKLKI PFGNKLLDAV CLVPNKSLTY GIILTHGASG DMNLPHLMSL 


                          51                                                 100
ENSTTRP00000005946/1-126  ---------- ---------- ---------- ---------- ---------- 
ENSBTAP00000035234/1-224  ASHLASHGFF CLRFTCKGLN IVHRIKAYKS VLNYLKTS-E YKLAGVFLGG 
bmy_01379T0/1-225         ASHLASHGFF SLRFTCKGLN IVHRIKAYKS VLNYLKTSGE YKLAGVFLGG 
ENSP00000365200/1-227     ASHLASHGFF CLRFTCKGLN IVHRIKAYKS VLNYLKTSGE YKLAGVFLGG 


                          101                                                150
ENSTTRP00000005946/1-126  -RSGSRAAAS VMCHTEPDDA DDFVRGLICI SYPLHHPKQQ HKLRDEDLFR 
ENSBTAP00000035234/1-224  RSMGSRAAAS VLCHIEPDDA DDFVRGLICI SYPLHHPKQQ HKLRDEDLFR 
bmy_01379T0/1-225         RSMGSRAAAS VMCHIEPEDA DNFVRGLICI SYPLHHPKQQ HKLRDEDLFR 
ENSP00000365200/1-227     RSMGSRAAAS VMCHIEPDDG DDFVRGLICI SYPLHHPKQQ HKLRDEDLFR 


                          151                                                200
ENSTTRP00000005946/1-126  IKDPVLFVSG SADEMCEKNL LEKVAQKMQA PNKIHWIEKA SHSMAVKGRS 
ENSBTAP00000035234/1-224  IKDPVLFVSG SADEMCEKNL LEKVAQKMQA PHKIHWIEKA NHSMAVKGRS 
bmy_01379T0/1-225         IKDPVLFVSG SADEMCEKNL LEKVAQKMQA PNKIHWIEKA SHSMAVKGRS 
ENSP00000365200/1-227     LKEPVLFVSG SADEMCEKNL LEKVAQKMQA PHKIHWIEKA NHSMAVKGRS 


                          201                                                250
ENSTTRP00000005946/1-126  TNDVFKEINT QILFWIQEIT EMDKKCL 
ENSBTAP00000035234/1-224  TNDVFKEINT QILFWIQEIT ETDKK-- 
bmy_01379T0/1-225         TNDVFKEINT QILFWIQEIT EMDKK-- 
ENSP00000365200/1-227     TNDVFKEINT QILFWIQEIT EMDKKCH