KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:45:19 2014 Check: 00 .. Name: ENSP00000365233/1-1249 Len: 1327 Check: 9647 Weight: 1.00 Name: ENSBTAP00000035243/1-1249 Len: 1327 Check: 1353 Weight: 1.00 Name: ENSTTRP00000005942/1-1261 Len: 1327 Check: 7606 Weight: 1.00 Name: bmy_01382T0/1-1327 Len: 1327 Check: 8425 Weight: 1.00 Name: BACU017437/1-1009 Len: 1327 Check: 5347 Weight: 1.00 // 1 50 ENSP00000365233/1-1249 MATAATEEPF PFHGLLPKKE TGAASFLCRY PEYDGRGVLI AVLDTGVDPG ENSBTAP00000035243/1-1249 MATAATEEPF PFHGLLPKKE TGAAAFLCRY PEYDGRGVLI AVLDTGVDPG ENSTTRP00000005942/1-1261 KATAANEEPF PFHGLLPKKE TGAASFLCRY PEYDGRGVLI AVLDTGVDPG bmy_01382T0/1-1327 MATAANEEPF PFHGLLPKKE TGAASFLCRY PEYDGRGVLI AVLDTGVDPG BACU017437/1-1009 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000365233/1-1249 APGMQVTTDG KPKIVDIIDT TGSGDVNTAT EVEPKDGEIV GLSGRVLKIP ENSBTAP00000035243/1-1249 APGMQVTTDG KPKIIDIIDT TGSGDVNTAT VVEPKDGEIV GLSGRVLKIP ENSTTRP00000005942/1-1261 APGMQVTTDG RPKIIDIIDT TGSGDVNTAT VVEPKDGEII GLSGRVLKIP bmy_01382T0/1-1327 APGMQVTTDG RPKIIDIIDT TGSGDVNTAT VVEPKDGEII GLSGRVLKIP BACU017437/1-1009 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000365233/1-1249 ASWTNPSGKY HIGIKNGYDF YPKALKERIQ KERKEKIWDP VHRVALAEAC ENSBTAP00000035243/1-1249 VTWTNPSGRY HIGIKNGYDF YPKALKERIQ KERKEKIWDP VHRAALAEAC ENSTTRP00000005942/1-1261 ASWTNPSGRY HIGIKNGYDF YPKALKERIQ KERKEKMWDP VHRVALAEAC bmy_01382T0/1-1327 ASWTNPSGRY HIGIKNGYDF YPKALKERIQ KERKEKIWDP VHRVALAEAC BACU017437/1-1009 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000365233/1-1249 RKQEEFDVAN NGSSQANKLI KEELQSQVEL LNSFEKKYSD PGPVYDCLVW ENSBTAP00000035243/1-1249 RKQEEFDVAN NCPSQANKLI KEELHSQVEL LNSFEKKYSD PGPVYDCLVW ENSTTRP00000005942/1-1261 RKQEEFDVAN NCPSQANKLI KEELQSQVEL LNSFEKKYSD PGPVYDCLVW bmy_01382T0/1-1327 RKQEEFDVAN NCPSQANKLI KEELQSQVEL LNSFEKKYSD PGPVYDCLVW BACU017437/1-1009 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000365233/1-1249 HDGEVWRACI DSNEDGDLSK STVLRNYKEA QEYGSFGTAE MLNYSVNIYD ENSBTAP00000035243/1-1249 FDGETWRACI DSSEDGDLSK STVLRNYKEA QEYGSFGAAE MLNYSVNIYD ENSTTRP00000005942/1-1261 HDGETWGACI ASNEDGDLSK STVLRNYREA QEYGSFGTAE MLNYSVNIYD bmy_01382T0/1-1327 HDGETWGACI ASNEDGDLSK STVLRNYREA QEYGSFGTAE MLNYSVNIYE BACU017437/1-1009 ---------- ---------- ---------- ---------- MLNYSVNIYE 251 300 ENSP00000365233/1-1249 DGNLLSIVTS GGAHGTHVAS IAAGHFPEEP ERNGVAPGAQ ILSIKIGDTR ENSBTAP00000035243/1-1249 DGNLLSIVTS GGAHGTHVAS IAAGHFPEEP ERNGVAPGAQ ILSIKIGDTR ENSTTRP00000005942/1-1261 DGNLLSIVTS GGAHGTHVAS IAAGHFPEEP ERNGVAPGAQ ILSIKIGDTR bmy_01382T0/1-1327 DGNLLSIVTS GGAHGTHVAS IAAGHFPEEP ERNGVAPGAQ VLSIKVGDTR BACU017437/1-1009 DGNLLSIVTS GGAHGTHVAS IAAGHFPEEP ERNGVAPGAQ ILSIKIGDTR 301 350 ENSP00000365233/1-1249 LSTMETGTGL IRAMIEVINH KCDLVNYSYG EATHWPNSGR ICEVINEAVW ENSBTAP00000035243/1-1249 LSTMETGTGL IRAMIEVINH KCDLVNYSYG EATHWPNSGR ICEVINEAVW ENSTTRP00000005942/1-1261 LSTMETGTGL IRAMIEVINH KCDLVNYSYG EATHWPNSGR ICEVISEAVW bmy_01382T0/1-1327 LSTMETGTGL IRAMIEVINH KCDLVNYSYG EATHWPNSGR ICEVISEAVW BACU017437/1-1009 LSTMETGTGL IRAMIEVINH KCDLVNYSYG EATHWPNSGR ICEVISEAVW 351 400 ENSP00000365233/1-1249 KHNIIYVSSA GNNGPCLSTV GCPGGTTSSV IGVGAYVSPD MMVAEYSLRE ENSBTAP00000035243/1-1249 KHNIIYVSSA GNNGPCLSTV GCPGGTTSSV IGVGAYVSPD MMVAEYSLRE ENSTTRP00000005942/1-1261 KHNVIYVSSA GNNGPCLSTV GCPGGTTSSV IGVGAYVSPD MMVAEYSLRE bmy_01382T0/1-1327 KHNVIYVSSA GNNGPCLSTV GCPGGTTSSV IGVGAYVSPD MMVAEYSLRE BACU017437/1-1009 KHNVIYVSSA GNNGPCLSTV GCPGGTTSSV IGVGAYVSPD MMVAEYSLRE 401 450 ENSP00000365233/1-1249 KLPANQYTWS SRGPSADGAL GVSISAPGGA IASVPNWTLR GTQLMNGTSM ENSBTAP00000035243/1-1249 KLPANQYTWS SRGPSADGAL GVSVSAPGGA IASVPNWTLR GTQLMNGTSM ENSTTRP00000005942/1-1261 KLPANQYTWS SRGPSADGAL GVSISAPGGA IASVPNWTLR GTQLMNGTSM bmy_01382T0/1-1327 KLPANQYTWS SRGPSADGAL GVSISAPGGA IASVPNWTLR GTQLMNGTSM BACU017437/1-1009 KLPANQYTWS SRGPSADGAL GVSISAPGGA IASVPNWTLR GTQLMNGTSM 451 500 ENSP00000365233/1-1249 SSPNACGGIA LILSGLKANN IDYTVHSVRR ALENTAVKAD NIEVFAQGHG ENSBTAP00000035243/1-1249 SSPNACGGIA LVLSGLKAND VNYTVHSVRR ALENTAVKAD NIEVFAQGHG ENSTTRP00000005942/1-1261 SSPNACGGIA LILSGLKANN VNYTVHSVRR ALENTAVKAD NIEVFAQGHG bmy_01382T0/1-1327 SSPNACGGIA LILSGLKANN VNYTVHSVRR ALENTAVKAD NIEVFAQGHG BACU017437/1-1009 SSPNACGGIA LILSGLKANN VDYTVHSVRR ALENTAVKAD NIEVFAQGHG 501 550 ENSP00000365233/1-1249 IIQVDKAYDY LVQNTSFANK LGFTVTVGNN RGIYLRDPVQ VAAPSDHGVG ENSBTAP00000035243/1-1249 IIQVDKAYDY LVQNTSFANK LGFTVTVGTN RGIYLRDPVQ VAAPSDHGVG ENSTTRP00000005942/1-1261 IIQVDKAYDY LVQNTSFANK LGFTVTVGNN RGIYLRDPVQ VAAPSDHGVG bmy_01382T0/1-1327 IIQVDKAYDY LVQNTSFANK LGFTVTVGNN RGIYLRDPVQ VAAPSDHGVG BACU017437/1-1009 IIQVDKAYDY LVQNTSFANK LGFTVTVGNN RGIYLRDPVQ VAAPSDHGVG 551 600 ENSP00000365233/1-1249 IEPVFPENTE NSEKISLQLH LALTSNSSWV QCPSHLELMN QCRHINIRVD ENSBTAP00000035243/1-1249 IEPVFPENTE NSEKISLQLH LALTSNSSWV QCPSHLELMN QCRHVNIRVD ENSTTRP00000005942/1-1261 IEPVFPENTE NSEKISLQLH LALTSNSSWV QCPSHLELMN QCRHINIRVD bmy_01382T0/1-1327 IEPVFPENTE NSEKISLQLH LALTSNSSWV QCPSHLELMN QCRHINIRVD BACU017437/1-1009 IEPVFPENTE NSEKISLQLH LALTSNSSWV QCPSHLELMN QCRHINIRVD 601 650 ENSP00000365233/1-1249 PRGLREGLHY TEVCGYDIAS PNAGPLFRVP ITAVIAAKVN ESSHYDLAFT ENSBTAP00000035243/1-1249 PRGLREGLHY TEVCGYDIAS PNAGPLFRVP ITAVIAAKVN ESTHYDLALT ENSTTRP00000005942/1-1261 PRGLREGLHY TEVCGYDIAS PNAGPLFRVP ITAVIAAKVN ESTHYDLALT bmy_01382T0/1-1327 PRGLREGLHY TEVCGYDIAS PNAGPLFRVP ITAAIAAKVN ESTHYDLALT BACU017437/1-1009 PRGLREGLHY TEVCGYDIAS PNAGPLFRVP ITAAIAAKVN ESTHYDLALT 651 700 ENSP00000365233/1-1249 DVHFKPGQIR RHFIEVPEGA TWAEVTVCSC SSEVSAKFVL HAVQLVKQRA ENSBTAP00000035243/1-1249 DVHFKPGQIR RHFIEVPEGA TWAEVTVCSC SSEVSAKFVL HAVQLVKQRA ENSTTRP00000005942/1-1261 DVHFKPGQIR RHFIEVPEGA TWAEVMVCSC SSEVSAKFVL HAVQLVKQRA bmy_01382T0/1-1327 DVHFKPGQIR RHFIEVPEGA TWAEVTVCSC SSEVSAKFVL HAVQLVKQRA BACU017437/1-1009 DVHFKPGQIR RHFIEVPEGA TWAEVTVCSC SSEVSAKFVL HAVQLVKQRA 701 750 ENSP00000365233/1-1249 YRSHEFYKFC SLPEKGTLTE AFPVLGGKAI EFCIARWWAS LSDVNIDYTI ENSBTAP00000035243/1-1249 YRSHEFYKFC SLPEKGTLTE AFPVLGGKAI EFCIARWWAS LSDVNIDYTV ENSTTRP00000005942/1-1261 YRSHEFYKFC SLPEKGMLTE SFPVLGGKAI EFCIARWWAS LSDVNIDYTI bmy_01382T0/1-1327 YRSHEFYKFC SLPEKGTLTE AFPVLGGKAI EFCIARWWAS LSDVNIDYTV BACU017437/1-1009 YRSHEFYKFC SLPEKGTLTE AFPVLGGKAI EFCIARWWAS LSDVNIDYTV 751 800 ENSP00000365233/1-1249 SFHGIVCTAP QLNIHASEGI NRFDVQSSLK YEDLAPCITL KNWVQTLR-- ENSBTAP00000035243/1-1249 SFHGIVCTAP QLNIHASEGI NRFDVQSSLK YEDLAPCITL KSWVQTLR-- ENSTTRP00000005942/1-1261 SFHGIVCTAP QLNIHASEGI NRFDVQSSLK YEDLAPCITL KSWVQTLR-- bmy_01382T0/1-1327 SFHGIVCTAP QLNIHASEGI NRFDVQSSLK YEDLAPCITL KSWVQTLRYL BACU017437/1-1009 SFHGIVCTAP QLNIHASEGI NRFDVQSSLK YEDLAPCITL KSWVQTLR-- 801 850 ENSP00000365233/1-1249 ---------P VSAKTKPLGS RDVLPNNRQL YEMVLTYNFH QPKSGEVTPS ENSBTAP00000035243/1-1249 ---------P LSAKTKPLGS RDVLPNNRQL YEMILTYNFH QPKSGEVTPS ENSTTRP00000005942/1-1261 ---------P LSAKTKPLGS RDVLPNNRQL YEMILTYNFH QPKSGEVTPS bmy_01382T0/1-1327 QCFRAANVGP LSAKTKPLGS RDVLPNNRQL YEMILTYNFH QPKSGEVTPS BACU017437/1-1009 ---------P LSAKTKPLGS RDVLPNNRQL YEMILTYNFH QPKSGEVTPS 851 900 ENSP00000365233/1-1249 CPLLCELLYE SEFDSQLWII FDQNKRQMGS GDAYPHQYSL KLEKGDYTIR ENSBTAP00000035243/1-1249 CPLLCELLYE SEFDSQLWII FDQNKRQMGS GDAYPHQYSL KLEKGDYTIR ENSTTRP00000005942/1-1261 CPLLCELLYE SEFDSQLWII FDQNKRQMGS GDAYPHQYSL KLEKGDYTIR bmy_01382T0/1-1327 CPLLCELLYE SEFDSQLWII FDQNKRQMGS GDAYPHQYSL KLEKGDYTIR BACU017437/1-1009 CPLLCELLYE SEFDSQLWII FDQNKRQMGS GDAYPHQYSL KLEKGDYTIR 901 950 ENSP00000365233/1-1249 LQIRHEQISD LERLKDLPFI VSHRLSNTLS LDIHENHSFA LLGKKKSSNL ENSBTAP00000035243/1-1249 LQIRHEQISD LERLKDLPFI VSHRLSNTLS LDIHENHSLA LLGKKKSSNL ENSTTRP00000005942/1-1261 LQIRHEQISD LERLKDLPFI VSHRLSNTLS LDIHENHSLA LLGKKKSSNL bmy_01382T0/1-1327 LQIRHEQISD LERLKDLPFI VSHRLSNTLS LDIHENHSLA LLGKKKSSNL BACU017437/1-1009 LQIRHEQISD LERLKDLPFI VSHRLSNTLS LDIHENHSLA LLGKKKSSNL 951 1000 ENSP00000365233/1-1249 TLPPKYNQPF FVTSLPDDKI PKGAGPGCYL AGSLTLSKTE LGKKA----- ENSBTAP00000035243/1-1249 TLPPKYNQPF FVTSLPDDKI PKGAGPGCYL TGSLTLSKTE LGKKA----- ENSTTRP00000005942/1-1261 TLPPKYNQPF FVTSLPDDKI PKGAGPGCYL AGSLTLSKTE LGKKAGQSAA bmy_01382T0/1-1327 TLPPKYNQPF FVTSLPDDKI PKGAGPGCYL AGSLTLSKTE LGKKAGQSAA BACU017437/1-1009 TLPPKYNQPF FVTSLPDDKI PKGAGPGCYL AGSLTLSKTE LGKKA----- 1001 1050 ENSP00000365233/1-1249 ---------- ---------- ---------- ---------- ---DVIPVHY ENSBTAP00000035243/1-1249 ---------- ---------- ---------- ---------- ---DVIPVHY ENSTTRP00000005942/1-1261 KRQGKFKK-- ---------- ---------- ---------- ---DVIPVHY bmy_01382T0/1-1327 KRQGKFKKNL TLRVLRPLQR VKGPCLLCPS PLRSYYLAHR GSSDVIPVHY BACU017437/1-1009 ---------- ---------- ---------- ---------- ---DVIPVHY 1051 1100 ENSP00000365233/1-1249 YLIPPPTKTK NGSKDKEKDS EKEKDLKEEF TEALRDLKIQ WMTKLDSSDI ENSBTAP00000035243/1-1249 YLISPPTKTK NGSKDKEKDS EKEKDLKEEF TEALRDLKIQ WMTKLDSSDI ENSTTRP00000005942/1-1261 YLISPPTKTK NGSKEKEKDS EKEKDLKEEF TEALRDLKIQ WMTKLDSSDI bmy_01382T0/1-1327 YLISPPTKTK NGSKDKEKDS EKEKDLKEEF TEALRDLKIQ WMTKLDSSDI BACU017437/1-1009 YLISPPTKTK NGSKDKEKDS EKEKDLKEEF TEALRDLKIQ WMTKLDSSDI 1101 1150 ENSP00000365233/1-1249 YNELKETYPN YLPLYVARLH QLDAE----- ---------- ----KERMKR ENSBTAP00000035243/1-1249 YNELKETYPN YLPLYVARLH QLDAE----- ---------- ----KERMKR ENSTTRP00000005942/1-1261 YNELKETYPN YLPLYVARLH QLDAE----- ---------- ----KERMKR bmy_01382T0/1-1327 YNELKETYPN YLPLYVARLH QLDAEKVGHV QFYHESLIAF AVLDKERMKR BACU017437/1-1009 YNELKETYPN YLPLYVARLH QLDAE----- ---------- ----KERMKR 1151 1200 ENSP00000365233/1-1249 LNEIVDAANA VISHIDQTAL AVYIAMKTDP RPDAATIKND MDKQKSTLVD ENSBTAP00000035243/1-1249 LNEIVEAANA VISHIDQTAL AVYIAMKTDP RPDAAIIKND MDKQKSTLVD ENSTTRP00000005942/1-1261 LNEIVEAANA VISHIDQTAL AVYIAMKTDP RPDAAIIKND MDKQKSTLVD bmy_01382T0/1-1327 LNEIVEAANA VISHIDQTAL AVYIAMKTDP RPDAAIIKND MDKLKSTLVD BACU017437/1-1009 LNEIVEAANA VISHIDQTAL AVYIAMKTDP RPDAAIIKND MDKLKSTLVD 1201 1250 ENSP00000365233/1-1249 ALCRKGCALA DHLLHTQAQD GAISTDAEGK EEEGESPLDS LAETFWETTK ENSBTAP00000035243/1-1249 ALCRKGCALA DHLLQAQDQD GAVSSDSEGR EEEGESTLDS LTETFWETTK ENSTTRP00000005942/1-1261 ALCRKGCALA DHLLQTREED GAASGDLEGR EEEGESALDS LTETFWEATK bmy_01382T0/1-1327 ALCRKGCALA DRLLQAQEQD GAASSDLEGR EEEGESALDA LTETFWEATK BACU017437/1-1009 ALCRKGCALA DRLLQAQEQD GAASSDLEGR EEEGESTLDA LTETFWEATK 1251 1300 ENSP00000365233/1-1249 WTDLFDNKVL TFAYKHALVN KMYGRGLKFA TKLVEEKPTK ENWKNCIQLM ENSBTAP00000035243/1-1249 WTDLFDNKVL TFAYKHALVN KMYGRGLKFA TKLVEEKPTK ENWKNCIQLM ENSTTRP00000005942/1-1261 WTDLFDSKVL TFAYKHAFVN KMYGRGLKFA TKLVEEKPTK ENWKNCIQXX bmy_01382T0/1-1327 WTDLFDSKVL TFAYKHAFVN KMYGRGLKFA TKLVEEKPTK ENWKNCIQLM BACU017437/1-1009 WTDLFDSKVL TFAYKHAFVN KMYGRGLKFA TKLVEEKPTK ENWKNCIQLM 1301 1350 ENSP00000365233/1-1249 KLLGWTHCAS FTENWLPIMY PPDYCVF ENSBTAP00000035243/1-1249 KLLGWTHCAS FTENWLPIMY PPDYCVF ENSTTRP00000005942/1-1261 KLLGWTHCAS -TENWLPIMY PRDYSVF bmy_01382T0/1-1327 KLLGWTHCAS FTENWLPIMY PPDYSVF BACU017437/1-1009 KLLGWTHCAS FTENWLPIMY PPDYSVF