KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:45:20 2014 Check: 00 .. Name: ENSTTRP00000014169/1-625 Len: 761 Check: 4951 Weight: 1.00 Name: ENSP00000465260/1-453 Len: 761 Check: 606 Weight: 1.00 Name: bmy_06662T0/1-437 Len: 761 Check: 4389 Weight: 1.00 Name: ENSBTAP00000035256/1-744 Len: 761 Check: 6835 Weight: 1.00 // 1 50 ENSTTRP00000014169/1-625 ---------- ---------- ---------- ---------- ---------- ENSP00000465260/1-453 MQPTATMATA ATTTTTTTAT VALTTSWDNA TGRPTAEPDP ILDNYVLLVV bmy_06662T0/1-437 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035256/1-744 --------MA TAAAATTTAT VALTTTWDNA TDRPTAEPGP ILDSYLLLMV 51 100 ENSTTRP00000014169/1-625 ---------- ---------- ---------- ---------- ---------- ENSP00000465260/1-453 VMSLFVGGTL VVLSGVLLLC KRCWDVHQRL NRAMEE---A EKTTTTYLDN bmy_06662T0/1-437 -MALFVGGTL VVLSGALLLC RRCWEVHRRV HRATEE---A EKTTTSYLDN ENSBTAP00000035256/1-744 VMALFVGGAL AVLSGALLLC RRCWEAHRRL HSTPQSPRGS REDTTTYLDN 101 150 ENSTTRP00000014169/1-625 -------PEF RGEEPEGQDA ETERFLSTSS TGRRVSFNEA ALFEQSRKAQ ENSP00000465260/1-453 GTHPAQDPDF RGEDPECQDA ETERFLSTSS TGRRVSFNEA ALFEQSRKTQ bmy_06662T0/1-437 GARPAQDPEF RGEEPEGQDA ETERFLSTSS TGRRVSFNEA ALFEQSRKTQ ENSBTAP00000035256/1-744 GAHPTQDPEF RGEDPEGQDT ETQRFLSTSS TGRRVSFNEA ALFEQSRKAQ 151 200 ENSTTRP00000014169/1-625 DKGGQGRWGR GAGVGRGTQL A-------LT GRRAGRRYTL TEGDFHHLKN ENSP00000465260/1-453 DK-------- ---------- ---------- ----GRRYTL TEGDFHHLKN bmy_06662T0/1-437 DK-------- ---------- ---------- ----GRRYTL TEGDFHHLKN ENSBTAP00000035256/1-744 DKGRRTWWAV TAGLERALEC VWGPGLPEVT GRRAGRRYTL TEGDFHHLKN 201 250 ENSTTRP00000014169/1-625 ARLTHLHLPP LKIVTIHECD SGEASATATP HPTAAPKASL AIFQXXXXXX ENSP00000465260/1-453 ARLTHLHLPP LKIVTIHECD SGEASSATTP HPATSPKATL AIFQPPGKAL bmy_06662T0/1-437 ARLTHLHLPP LKIVTIHECD SGEASATATP HPTAAPKASL AIFQPPGKAL ENSBTAP00000035256/1-744 ARLTHLHLPP LKIVTIHECD SGEASATATP HSTVVPKASL AIFQPPGKAL 251 300 ENSTTRP00000014169/1-625 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000465260/1-453 TGRSVGPSSA LPGDPYNSAA GATDFAEISP SASSDSGEGT SLDAGTRSTK bmy_06662T0/1-437 TGRSVGPSSA LPGDPYNSAV GPADF-EISP SASSDSGEGI SLDAGARSAK ENSBTAP00000035256/1-744 TGRSVGPSSA LPGDPYNSAV GPANF-GISP SASSDSGEGS SLDTGARSAK 301 350 ENSTTRP00000014169/1-625 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000465260/1-453 AGGPGAAAGP GEAGPGSGAG TVLQFLTRLR RHASLDGASP YFKVKKWKLE bmy_06662T0/1-437 PGGPGAAAGP GEAGPVSGAG PVLQFFTRLR RHASLDGASP YFKVKKWKLE ENSBTAP00000035256/1-744 PGVQGAAAGP GEAGPGSGAG PVLQFFTRLR RHASLDGASP YFKVKKWKLE 351 400 ENSTTRP00000014169/1-625 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000465260/1-453 PSQRAASLDT RGSPKRHHFQ RQRAASESTE QEEGDAPQED FIQYIARAGD bmy_06662T0/1-437 PSQRASSLDT RGSPKRHHFQ RQRAASESME QEEGDAPHVD FIQYIASAGD ENSBTAP00000035256/1-744 PSQRASSLDT RGSPKRHHFQ RQRAASESME QEEGDAPHVD FIQYIASAGD 401 450 ENSTTRP00000014169/1-625 XXXXXXXXXX XX------XX XXXXXX---L EAAEEVGAAG GASPEFPPE- ENSP00000465260/1-453 AVAFPHPRPF LA------SP PPALGRYFSV DGGARGGPVG PCPPSPPPRR bmy_06662T0/1-437 TVAFPSPRPF LASPTSPASP PPTLGR---L EAAEEVGAAG GASPEFPPE- ENSBTAP00000035256/1-744 TMVFPSPRPF LASPT---SP PPSLGR---L EAAEEVGAAG GASPESPLE- 451 500 ENSTTRP00000014169/1-625 -CGVSAGPEQ QQDSDGERDA EPEQAQTIYR DIWSLRASLE LHAATASDHS ENSP00000465260/1-453 PRERSPGPVD TRSPASSGKA PPRGG----- ---------- LTGATSPAWT bmy_06662T0/1-437 -CGVSAGPEQ QQDSDGERDA GPEQAQTIYR DIWSLRASLE LHAATASDHS ENSBTAP00000035256/1-744 -RGIIAGPEQ LQDSDGERDA GLEQAPTIYR DIWSLRASLE LHAAASSDHS 501 550 ENSTTRP00000014169/1-625 SSGNDRDSVR SGDS--SGSG GAATAFPPPS PPPT--PRTA DGEAGGPRKL ENSP00000465260/1-453 RGGKQGETG- ---------- ---------- ---------- ---------- bmy_06662T0/1-437 SSGNDRDS-- ---------- ---------- ---------- ---------- ENSBTAP00000035256/1-744 SSGNDRDSVR SGDSSGSGSG GAAPVFPPPS PPPTPMPRPA DGETGGPRKL 551 600 ENSTTRP00000014169/1-625 LQMDSGYASI EGRGAGDDGP PSAPXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000465260/1-453 ---------- ---------- ---------- ---------- ---------- bmy_06662T0/1-437 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035256/1-744 LQMDSGYASI EGRGVGDDGF ESPAPETPVR PRSPRAWPRR APRRDYSIDE 601 650 ENSTTRP00000014169/1-625 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000465260/1-453 ---------- ---------- ---------- ---------- ---------- bmy_06662T0/1-437 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035256/1-744 KTDALFHEFL RHDPHFDDAL SATARHRARA HPHPHARKQW QQRGRQHSDP 651 700 ENSTTRP00000014169/1-625 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXGRA-- -----SIPVI ENSP00000465260/1-453 ---------- ---------- ---------- ---------- ---------- bmy_06662T0/1-437 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035256/1-744 GARAAPPTPS TAQSGAPRPA RAPLRRGDSV DCPPDGRAGD DPATSSIPVI 701 750 ENSTTRP00000014169/1-625 EEEPGGGCPG SGLCAGPPGA LLDKLAASLD DRLFPPRLAQ PVAAAPALAV ENSP00000465260/1-453 ---------- ---------- ---------- ---------- ---------- bmy_06662T0/1-437 ---------- ---------- ---------- ---------- PVAAAAVLAA ENSBTAP00000035256/1-744 EEEPGGGCPG SGLCAGTPGA LLDKLAASLD DRLFPPRLAQ PVAVAPALAT 751 800 ENSTTRP00000014169/1-625 AAPTSPDHSP V ENSP00000465260/1-453 ---------- - bmy_06662T0/1-437 AVPTSPDHSP V ENSBTAP00000035256/1-744 AAPTSPDHSP V