KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:45:21 2014 Check: 00 .. Name: ENSBTAP00000035273/1-1175 Len: 1184 Check: 8757 Weight: 1.00 Name: ENSTTRP00000011691/1-1173 Len: 1184 Check: 7399 Weight: 1.00 Name: ENSP00000355013/1-1173 Len: 1184 Check: 4452 Weight: 1.00 Name: bmy_22392T0/1-1096 Len: 1184 Check: 6478 Weight: 1.00 Name: BACU005656/1-1179 Len: 1184 Check: 1291 Weight: 1.00 // 1 50 ENSBTAP00000035273/1-1175 MSRGSIEIPL RDTDEVIELD FDQLPEGDEV ISILKQEHTQ LHIWIALALE ENSTTRP00000011691/1-1173 MSRGSIEIPL RDTDEVIELD FDQLPEGDEV ISILKQEHTQ LHIWIALALE ENSP00000355013/1-1173 MSRGSIEIPL RDTDEVIELD FDQLPEGDEV ISILKQEHTQ LHIWIALALE bmy_22392T0/1-1096 MSRGSIEIPL RDTDEVIELD FDQLPEGDEV ISILKQEHTQ LHIWIALA-- BACU005656/1-1179 MSRGSIEIPL RDTDEVIELD FDQLPEGDEV ISILKQEHTQ LHIWIALALE 51 100 ENSBTAP00000035273/1-1175 YYKQGKTEEF VKLLEAARID GNLDYRDHEK DQMTCLDTLA AYYVQQARKE ENSTTRP00000011691/1-1173 YYKQGKTEEF VKLLEAARID GNLDYRDHEK DQMTCLDTLA AYYVQQARKE ENSP00000355013/1-1173 YYKQGKTEEF VKLLEAARID GNLDYRDHEK DQMTCLDTLA AYYVQQARKE bmy_22392T0/1-1096 ---------- ---------- ---------- ---------- ---------- BACU005656/1-1179 YYKQGKTEEF VKLLEAARID GNLDYRDHEK DQMTCLDTLA AYYVQQARKE 101 150 ENSBTAP00000035273/1-1175 KNKDNKKDLI TQATLLYTMA DKIIMYDQNH LLGRACFCLL EGDKMDQADA ENSTTRP00000011691/1-1173 KNKDNKKDLI TQATLLYTMA DKIIMYDQNH LLGRACFCLL EGDKMDQADA ENSP00000355013/1-1173 KNKDNKKDLI TQATLLYTMA DKIIMYDQNH LLGRACFCLL EGDKMDQADA bmy_22392T0/1-1096 ---------- ---------- --------NH LLGRACFCLL EGDKMDQADA BACU005656/1-1179 KNKDNKKDLI TQATLLYTMA DKIIMYDQNH LLGRACFCLL EGDKMDQADA 151 200 ENSBTAP00000035273/1-1175 QFHFVLNQSP NNIPALLGKA CISFNKKDYR GALAYYKKAL RTNPGCPDVQ ENSTTRP00000011691/1-1173 QFHFVLNQSP NNIPALLGKA CISFNKKDYR GALAYYKKAL RTNPGCPAEV ENSP00000355013/1-1173 QFHFVLNQSP NNIPALLGKA CISFNKKDYR GALAYYKKAL RTNPGCPAEV bmy_22392T0/1-1096 QFHFVLNQSP NNIPALLGKA CISFNKKDYR GALAYYKKAL RTNPGCPAEV BACU005656/1-1179 QFHFVLNQSP NNIPALLGKA CISFNKKDYR GALAYYKKAL RTNPGCPAEV 201 250 ENSBTAP00000035273/1-1175 RVFLKHAFQH LLKSESDRVQ FCADIILNTY CVTYIVLYIL CMINHKSADS ENSTTRP00000011691/1-1173 RLGMGHCFVK LNKLEKARLA FSRALELNSK CVGALVGLAV LELNNKEXXX ENSP00000355013/1-1173 RLGMGHCFVK LNKLEKARLA FSRALELNSK CVGALVGLAV LELNNKEADS bmy_22392T0/1-1096 RLGMGHCFVK LNKLEKARLA FSRALELNSK CVGALVGLAV LELNNKEADS BACU005656/1-1179 RLGMGHCFVK LNKLEKARLA FSRALELNSK CVGALVGLAV LELNNKEADS 251 300 ENSBTAP00000035273/1-1175 IKNGVQLLSR AYTIDPSNPM VLNHLANHFF FKKDYSKVQH LALHAFHNTE ENSTTRP00000011691/1-1173 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXDYSKVQH LALHAFHNTE ENSP00000355013/1-1173 IKNGVQLLSR AYTIDPSNPM VLNHLANHFF FKKDYSKVQH LALHAFHNTE bmy_22392T0/1-1096 IKNGVQLLSR AYTIDPSNPM VLNHLANHFF FKKDYSKVQH LALHAFHNTE BACU005656/1-1179 IKNGVQLLSR AYTIDPSNPM VLNHLANHFF FKKDYSKVQH LALHAFHNTE 301 350 ENSBTAP00000035273/1-1175 VEAMQAESCY QLARSFHVQE DYDQAFQYYY QATQFASSSF VLPFFGLGQM ENSTTRP00000011691/1-1173 VEAMQAESCY QLARSFHVQE DYDQAFQYYY QATQFASSSF VLPFFGLGQM ENSP00000355013/1-1173 VEAMQAESCY QLARSFHVQE DYDQAFQYYY QATQFASSSF VLPFFGLGQM bmy_22392T0/1-1096 VEAMQAESCY QLARSFHVQE DYDQAFQYYY QATQFASSSF VLPFFGLGQM BACU005656/1-1179 VEAMQAESCY QLARSFHVQE DYDQAFQYYY QATQFASSSF VLPFFGLGQM 351 400 ENSBTAP00000035273/1-1175 YIYRGDKENA SQCFEKVLKA YPNNYETMKI LGSLYAASED QEKRDIAKGH ENSTTRP00000011691/1-1173 YIYRGDKENA SQCFEKVLKA YPNNYETMKI LGSLYAASED QEKRDIAKGH ENSP00000355013/1-1173 YIYRGDKENA SQCFEKVLKA YPNNYETMKI LGSLYAASED QEKRDIAKGH bmy_22392T0/1-1096 YIYRGDKENA SQCFEKVLKA YPNNYETMKI LGSLYAASED QEKRDIAKGH BACU005656/1-1179 YIYRGDKENA SQCFEKVLKA YPNNYETMKI LGSLYAASED QEKRDIAKGH 401 450 ENSBTAP00000035273/1-1175 LKKVTEQYPD DVEAWIELAQ ILEQTDIQGA LSAYGTATRI LQEKVQADVP ENSTTRP00000011691/1-1173 LKKVTEQYPD DVEAWIELAQ ILEQTDIQGA LSAYGTATRI LQEKVQADVP ENSP00000355013/1-1173 LKKVTEQYPD DVEAWIELAQ ILEQTDIQGA LSAYGTATRI LQEKVQADVP bmy_22392T0/1-1096 LKKVTEQYPD DVEAWIELAQ ILEQTDIQGA LSAYGTATRI LQEKVQADVP BACU005656/1-1179 LKKVTEQYPD DVEAWIELAQ ILEQTDIQGA LSAYGTATRI LQEKVQADVP 451 500 ENSBTAP00000035273/1-1175 PEILNNVGAL HFRLGNLGEA KKYFLASLDR AKAEAEHDEH YYNAISVTTS ENSTTRP00000011691/1-1173 PEILNNVGAL HFRLGNLGEA KKYFLASLDR AKAEAEHDEH YYNAISVTTS ENSP00000355013/1-1173 PEILNNVGAL HFRLGNLGEA KKYFLASLDR AKAEAEHDEH YYNAISVTTS bmy_22392T0/1-1096 PEILNNVGAL HFRLGNLGEA KKYFLASLDR AKAEAEHDEH YYNAISVTTS BACU005656/1-1179 PEILNNVGAL HFRLGNLGEA KKYFLASLDR AKAEAEHDEH YYNAISVTTS 501 550 ENSBTAP00000035273/1-1175 YNLARLYEAM CEFHEAEKLY KNILREHPNY VDCYLRLGAM ARDKGNFYEA ENSTTRP00000011691/1-1173 YNLARLYEAM CEFHEAEKLY KNILREHPNY VDCYLRLGAM ARDKGNFYEA ENSP00000355013/1-1173 YNLARLYEAM CEFHEAEKLY KNILREHPNY VDCYLRLGAM ARDKGNFYEA bmy_22392T0/1-1096 YNLARLYEAM CEFHEAEKLY KNILREHPNY VDCYLRLGAM ARDKGNFYEA BACU005656/1-1179 YNLARLYEAM CEFHEAEKLY KNILREHPNY VDCYLRLGAM ARDKGNFYEA 551 600 ENSBTAP00000035273/1-1175 SDWFKEALQI NQDHPDAWSL IGNLHLAKQE WGPGQKKFER ILKQPATQSD ENSTTRP00000011691/1-1173 SDWFKEALQI NQDHPDAWSL IGNLHLAKQE WGPGQKKFER ILKQPATQSD ENSP00000355013/1-1173 SDWFKEALQI NQDHPDAWSL IGNLHLAKQE WGPGQKKFER ILKQPSTQSD bmy_22392T0/1-1096 SDWFKEALQI NQDHPDAWSL IGNLHLAKQE WGPGQKKFER ILKQPATQSD BACU005656/1-1179 SDWFKEALQI NQDHPDAWSL IGNLHLAKQE WGPGQKKFER ILKQPATQSD 601 650 ENSBTAP00000035273/1-1175 TYSMLALGNV WLQTLHQPTR DREKEKRHQD RALAIYKQVL RNDAKNLYAA ENSTTRP00000011691/1-1173 TYSMLALGNV WLQTLHQPTR DREKEKRHQD RALAIYKQVL RNDAKNLYAA ENSP00000355013/1-1173 TYSMLALGNV WLQTLHQPTR DREKEKRHQD RALAIYKQVL RNDAKNLYAA bmy_22392T0/1-1096 TYSMLALGNV WLQTLHQPTR DREKEKRHQD RALAIYKQVL RNDAKNLYAA BACU005656/1-1179 TYSMLALGNV WLQTLHQPTR DREKEKRHQD RALAIYKQVL RNDAKNLYAA 651 700 ENSBTAP00000035273/1-1175 NGIALGAVLA HKGYFREARD VFAQVREATA DISDVWLNLA HIYVEQKQYI ENSTTRP00000011691/1-1173 NGI--GAVLA HKGYFREARD VFAQVREATA DISDVWLNLA HIYVEQKQYI ENSP00000355013/1-1173 NGI--GAVLA HKGYFREARD VFAQVREATA DISDVWLNLA HIYVEQKQYI bmy_22392T0/1-1096 NGI--GAVLA HKGYFREARD VFAQVREATA DISDVWLNLA HIYVEQKQYI BACU005656/1-1179 NGI--GAVLA HKGYFREARD VFAQVREATA DISDVWLNLA HIYVEQKQYI 701 750 ENSBTAP00000035273/1-1175 SAVQMYENCL RKFYKHQNTE VVLYLARALF KCGKLQECKQ TLLKARHVAP ENSTTRP00000011691/1-1173 SAVQMYENCL RKFYKHQNTE VVLYLARALF KCGKLQECKQ TLLKARHVAP ENSP00000355013/1-1173 SAVQMYENCL RKFYKHQNTE VVLYLARALF KCGKLQECKQ TLLKARHVAP bmy_22392T0/1-1096 SAVQMYENCL RKFYKHQNTE VVLYLARALF KCGKLQECKQ TLLKARHVAP BACU005656/1-1179 SAVQMYENCL RKFYKHQNTE VVLYLARALF KCGKLQECKQ TLLKARHVAP 751 800 ENSBTAP00000035273/1-1175 SDTVLMFNVA LVLQRLATSV LKDEKSNLKE VLNAVKELEL AHRYFSYLSK ENSTTRP00000011691/1-1173 SDTVLMFNVA LVLQRLATSV LKDEKSNLKE VLNAVKELEL AHRYFSYLSK ENSP00000355013/1-1173 SDTVLMFNVA LVLQRLATSV LKDEKSNLKE VLNAVKELEL AHRYFSYLSK bmy_22392T0/1-1096 SDTVLMFNVA LVLQRLATSV LKDEKSNLKE VLNAVKELEL AHRYFSYLSK BACU005656/1-1179 SDTVLMFNVA LVLQRLATSV LKDEKSNLKE VLNAVKELEL AHRYFSYLSK 801 850 ENSBTAP00000035273/1-1175 VGDKMRFDLA LAATEARQCS DLLSQAQYHV ARARKQDEEE RELRAKQEQE ENSTTRP00000011691/1-1173 VGDKMRFDLA LAATEARQCS DLLSQAQYHV ARARKQDEEE RELRAKQEQE ENSP00000355013/1-1173 VGDKMRFDLA LAATEARQCS DLLSQAQYHV ARARKQDEEE RELRAKQEQE bmy_22392T0/1-1096 VGDKMRFDLA LAATEARQCS DLLSQAQYHV ARARKQDEEE RELRAKQEQE BACU005656/1-1179 VGDKMRFDLA LAATEARQCS DLLSQAQYHV ARARKQDEEE RELRAKQEQE 851 900 ENSBTAP00000035273/1-1175 KELLRQKLLK EQEEKRLREK EEQKKLLEQR AQYVEKTKNI LMFTGETEAT ENSTTRP00000011691/1-1173 KELLRQKLLK EQEEKRLREK EEQKKLLEQR AQYVEKTKNI LMFTGETEAT ENSP00000355013/1-1173 KELLRQKLLK EQEEKRLREK EEQKKLLEQR AQYVEKTKNI LMFTGETEAT bmy_22392T0/1-1096 KELLRQKLLK EQEEKRLREK EEQKKLLEQR AQYVEKTKNI LMFTGETEAT BACU005656/1-1179 KELLRQKLLK EQEEKRLREK EEQKKLLEQR AQYVEKTKNI LMFTGETEAT 901 950 ENSBTAP00000035273/1-1175 KEKKRGGGGG RRSKKGGEFD EFVNDDTDED LPVSKKKKRR KGSGSEQEGE ENSTTRP00000011691/1-1173 KEKKRGGSGG RRSKKGGEFD EFVNDDTDDD LPISKKKKRR KGSGSEQEGE ENSP00000355013/1-1173 KEKKRGGGGG RRSKKGGEFD EFVNDDTDDD LPISKKKKRR KGSGSEQEGE bmy_22392T0/1-1096 KEKKRGGSGG RRSKKGGEFD EFVNDDTDED LPISKKKKRR KGSGSEQEGE BACU005656/1-1179 KEKKRGGSGG RRSKKGGEFD EFVNDDTDED LPISKKKKRR KGSGSEQEGE 951 1000 ENSBTAP00000035273/1-1175 EEEGGERKKK KRRRPPKGDE GSDDDETENG PKPKKRRPPR AEKKKAPKPE ENSTTRP00000011691/1-1173 EEEGGERERE K---PPKGDE GSDDDETENG PKSKKRRLPK AEKKKAPKPE ENSP00000355013/1-1173 DEEGGERKKK KRRRHPKGEE GSDDDETENG PKPKKRRPPK AEKKKAPKPE bmy_22392T0/1-1096 EEEGGERKKK KRRRPPKGDE GSDDDETENG PKPKKRRLPR AEKKKAPKPE BACU005656/1-1179 EEEGGERKKK KRRRPPKGDE GSDDDETENG PKPKKRRLPR AE-KKAPKPE 1001 1050 ENSBTAP00000035273/1-1175 RLPPSMKGKI KSKAIISSSD DSSDEDKLKI ADEGHPRNSH SNSDSDEGER ENSTTRP00000011691/1-1173 RLPPSMKGKI KSKAIISSSD DSSDEDKLKI ADEGHPR--N SDSDSDEGQR ENSP00000355013/1-1173 RLPPSMKGKI KSKAIISSSD DSSDEDKLKI ADEGHPRNSN SNSDSDEDEQ bmy_22392T0/1-1096 RLPPSMKGKI KSKAIISSSD DSSDEDKLKI ADEGHPR--N SDSDSDEGQR BACU005656/1-1179 RLPPSMKGKI KSKAIISSSD DSSDEDKLKI ADEGHPR--N SDSDSDEGQR 1051 1100 ENSBTAP00000035273/1-1175 RKKGASS-ES DSDENQNKSG SEAGS----P RRSRRSHSDE DSDSDQPARK ENSTTRP00000011691/1-1173 RKTGASSEES DSDENHNKSG SEAGS----P RRPRRQHSDE DSDSDQPTRN ENSP00000355013/1-1173 RKKCASS-ES DSDENQNKSG SEAGS----P RRPRRQRSDQ DSDSDQPSRK bmy_22392T0/1-1096 RKTGASSEES DSDENQNKSG SEAGS----P RRPRRQHSDE DSDSDQPARK BACU005656/1-1179 RKTGASSEES DSDENQNEAG SEAGSEAGSP RRPRRQHSDE DSDSDQPTRK 1101 1150 ENSBTAP00000035273/1-1175 RRPSGSEQSD NESLQSGRSR SAGSEMDSRP ASPSAESDHD SERASDNE-- ENSTTRP00000011691/1-1173 RRPSGSEQSD NESLQSGRSR SGGSEMDSQP ASPSAESDHY SERASDNEGS ENSP00000355013/1-1173 RRPSGSEQSD NESVQSGRSH SGVSENDSRP ASPSAESDHE SERGSDNE-- bmy_22392T0/1-1096 RRPSGSEQSD NESLQSGRSR SGGSEMDSRP ASPSAESDRY SERASDNEGS BACU005656/1-1179 RRPSGSEQSD NESLQSGRSR SGGSEMDSRP ASPSAESDRY SERASDNEGS 1151 1200 ENSBTAP00000035273/1-1175 --GSGPGSGN ESEPEGSNNE ASDRGSERGS DDSD ENSTTRP00000011691/1-1173 GRGSGRGSGN ESEPEGSNNE ASDQGSERGS DDSD ENSP00000355013/1-1173 --GSGQGSGN ESEPEGSNNE ASDRGSEHGS DDSD bmy_22392T0/1-1096 VRGSGRGSGN ESEPEGSNNE ASDQGSERGS DDSD BACU005656/1-1179 GRGSGRGSGN ESEPEGSNNE ASDQGSERGS DDSD