KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:45:25 2014 Check: 00 .. Name: bmy_12120T0/1-327 Len: 655 Check: 3506 Weight: 1.00 Name: BACU017444/1-374 Len: 655 Check: 961 Weight: 1.00 Name: ENSTTRP00000002410/1-496 Len: 655 Check: 645 Weight: 1.00 Name: ENSBTAP00000035289/1-614 Len: 655 Check: 5441 Weight: 1.00 Name: ENSP00000365514/1-532 Len: 655 Check: 1340 Weight: 1.00 // 1 50 bmy_12120T0/1-327 ---------- ---------- ---------- ---------- ---------- BACU017444/1-374 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002410/1-496 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035289/1-614 LLWRRRRLLL RFLSAPSLRV RPPEAHPGGG GGGGRRSAAR GTEAAATTAA ENSP00000365514/1-532 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_12120T0/1-327 ---------- ---------- ---------- ---------- ---------- BACU017444/1-374 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002410/1-496 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035289/1-614 AACAWSRAAA GRSPASGAGV GAEEARGSSG PAGRAGTLAM LLDAGPQFPA ENSP00000365514/1-532 ---------- ---------- ---------- ---------M LLDAGPQFPA 101 150 bmy_12120T0/1-327 ---------- ---------- ---------- ---------- ---------- BACU017444/1-374 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002410/1-496 ---------- ---------- ----QDRELS LTAAQNGFMD SAAAHMGAFK ENSBTAP00000035289/1-614 IGVGSFARHH HHSAAAAAAA AAEMQDRELS LAAAQNGFVD SAAAHMGAFK ENSP00000365514/1-532 IGVGSFARHH HHSAAAAAAA AAEMQDRELS LAAAQNGFVD SAAAHMGAFK 151 200 bmy_12120T0/1-327 ---------- ---------- ---------- ---------- ---------- BACU017444/1-374 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002410/1-496 LNPGAHELSP GQSSAFTSQG PGTYPGSAAA AAAAAALGPH AAHVGSYSGP ENSBTAP00000035289/1-614 LNPGAHELSP GQSSAFTSQG PGAYPGSAAA AAAAAALGPH AAHVGSYSGP ENSP00000365514/1-532 LNPGAHELSP GQSSAFTSQG PGAYPGSAAA AAAAAALGPH AAHVGSYSGP 201 250 bmy_12120T0/1-327 ---------- ---------- ---------- ---------- ---------- BACU017444/1-374 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002410/1-496 PFNSTRDFLF RSRGFGDSAP GGGQHGLFGP GAGGLHHAHS DAQGHLLFPG ENSBTAP00000035289/1-614 PFNSTRDFLF RSRGFGDSAP GGGQHGLFGP GAGGLHHAHS DAQGHLLFPG ENSP00000365514/1-532 PFNSTRDFLF RSRGFGDSAP GGGQHGLFGP GAGGLHHAHS DAQGHLLFPG 251 300 bmy_12120T0/1-327 ---------- ---------- ---------- ---------- ---------- BACU017444/1-374 ---------- -------MRL GLPGEVFGRS DQYRQVASPR TDPYSAAQLH ENSTTRP00000002410/1-496 LPEQHGPHGS QNVLNGQMRL GLPGEVFGRS DQYRQVASPR TDPYSAAQLH ENSBTAP00000035289/1-614 LPEQHGPHGS QNVLNGQMRL GLPGEVFGRS EQYRQVASPR TDPYSAAQLH ENSP00000365514/1-532 LPEQHGPHGS QNVLNGQMRL GLPGEVFGRS EQYRQVASPR TDPYSAAQLH 301 350 bmy_12120T0/1-327 -----MNMNM GMNMAAAAA- HHHHHHHHPG AFFRYMRQQC IKQELICKWI BACU017444/1-374 NQYGPMNMNM GMNMAAAAA- HHHHHHHHPG AFFRYMRQQC IKQELICKWI ENSTTRP00000002410/1-496 NQYGPMNMNM GMNMAAAAAH HHHHHHHC-- AFFRYMRQQC IKQELICKWI ENSBTAP00000035289/1-614 NQYGPMNMNM GMNMAAAAA- HHHHHHHHPG AFFRYMRQQC IKQELICKWI ENSP00000365514/1-532 NQYGPMNMNM GMNMAAAAAH HHHHHHHHPG AFFRYMRQQC IKQELICKWI 351 400 bmy_12120T0/1-327 DPEQLSNPKK SCNKTFSTMH ELVTHVSVEH VGGPEQSNHV CFWEECPREG BACU017444/1-374 DPEQLSNPKK SCNKTFSTMH ELVTHVSVEH VGGPEQSNHV CFWEECPREG ENSTTRP00000002410/1-496 DPEQLSNPKK SCNKTFSTMH ELVTHVSVEH VGGPEQSNHV CFWEECPREG ENSBTAP00000035289/1-614 DPEQLSNPKK SCNKTFSTMH ELVTHVSVEH VGGPEQSNHV CFWEECPREG ENSP00000365514/1-532 DPEQLSNPKK SCNKTFSTMH ELVTHVSVEH VGGPEQSNHV CFWEECPREG 401 450 bmy_12120T0/1-327 KPFKAKYKLV NHIRVHTGEK PFPCPFPGCG KVFARSENLK IHKRTHTGEK BACU017444/1-374 KPFKAKYKLI NHIRVHTGEK PFPCPFPGCG KVFARSENLK IHKRTHTGEK ENSTTRP00000002410/1-496 KPFKAKYKLV NHIRVHTGEK PFPCPFPGCG KVFARSENLK IHKRTHTGEK ENSBTAP00000035289/1-614 KPFKAKYKLV NHIRVHTGEK PFPCPFPGCG KVFARSENLK IHKRTHTGEK ENSP00000365514/1-532 KPFKAKYKLV NHIRVHTGEK PFPCPFPGCG KVFARSENLK IHKRTHTGEK 451 500 bmy_12120T0/1-327 PFQCEFEGCD RRFANSSDRK KHMHVHTSDK PYLCKMCDKS YTHPSSLRKH BACU017444/1-374 PFQCEFEGCD RRFANSSDRK KHMHVHTSDK PYLCKMCDKS YTHPSSLRKH ENSTTRP00000002410/1-496 PFQCEFEGCD RRFANSSDRK KHMHVHTSDK PYLCKMCDKS YTHPSSLRKH ENSBTAP00000035289/1-614 PFQCEFEGCD RRFANSSDRK KHMHVHTSDK PYLCKMCDKS YTHPSSLRKH ENSP00000365514/1-532 PFQCEFEGCD RRFANSSDRK KHMHVHTSDK PYLCKMCDKS YTHPSSLRKH 501 550 bmy_12120T0/1-327 MKVHESSPQG SESSPAASSG YESSTPPGLV SPSAEPQSSS NLSPAAAAAA BACU017444/1-374 MKVHESSPQG SESSPAASSG YESSTPPGLV SPSAEPQSSS NLSPAAAAAA ENSTTRP00000002410/1-496 MKVHESSPQG SESSPAASSG YESSTPPGLV SPSAEPQSSS NLSPAAAAAA ENSBTAP00000035289/1-614 MKVHESSPHV SESSPAASSG YESSTPPGLV SPSAEPQSSS TLSP-AAAAA ENSP00000365514/1-532 MKVHESSPQG SESSPAASSG YESSTPPGLV SPSAEPQSSS NLSPAAAAAA 551 600 bmy_12120T0/1-327 AAAAAAAAAA AAAAAQAAAA AALAGA---- ---------- --------AG BACU017444/1-374 AAAAAAAAAV SAVHRGGGSG GGSAGGXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000002410/1-496 AAAAAAAAAV SAVHRGGGSG GGGAGG---- ---------- ------GSSG ENSBTAP00000035289/1-614 AAAAAAAAAV SAVHR----- SGGAGG---- ---------- -------SSG ENSP00000365514/1-532 AAAAAAAAAV SAVHRGGGSG SGGAGG---- ---------- -------GSG 601 650 bmy_12120T0/1-327 RPEATAASPP TSMNGTCERP GPLSLSRSPP WRGDPPVASA QGTLHEKQKD BACU017444/1-374 XXXXXXXXXX XXXXXXGGGS G--------- --GGSGTAGG HSGLSSNFNE ENSTTRP00000002410/1-496 GGGGGGGGGG AGGGGGGGGS G--------- --GGSGTAGG HSGLSSNFNE ENSBTAP00000035289/1-614 GGGGGGGGGG AGGGGGGGSS G--------- --GGSGTAGG HGGLSSNFNE ENSP00000365514/1-532 GGSGSGGGGG GAGGGGGGSS G--------- --GGSGTAGG HSGLSSNFNE 651 700 bmy_12120T0/1-327 PFRSL BACU017444/1-374 WYV-- ENSTTRP00000002410/1-496 WYV-- ENSBTAP00000035289/1-614 WYV-- ENSP00000365514/1-532 WYV--