KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:45:26 2014 Check: 00 .. Name: ENSP00000367950/1-852 Len: 937 Check: 3866 Weight: 1.00 Name: ENSBTAP00000035318/1-843 Len: 937 Check: 1645 Weight: 1.00 Name: BACU013071/1-731 Len: 937 Check: 740 Weight: 1.00 Name: bmy_17662T0/1-663 Len: 937 Check: 5816 Weight: 1.00 Name: ENSTTRP00000013962/1-851 Len: 937 Check: 2510 Weight: 1.00 // 1 50 ENSP00000367950/1-852 MEALGPGGDR ASPASSTSSL DLWHLSMRAD SAYSSFSAAS GG---PEPRT ENSBTAP00000035318/1-843 MEALGPGGGR TSPASSTRSL DLRRLSAPTD SAYSSLSAAS GGPEAPEPRT BACU013071/1-731 MEALGPGSDC ASPASSTRSL DLRRLSARAD SAYSSFSAAS GG---PEPRT bmy_17662T0/1-663 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013962/1-851 MEALGPGGDC ASPASSTRSL DLRRLSARAD SAYSSFSAAS GG---PEPRT 51 100 ENSP00000367950/1-852 QSP--GTDLL PYLDWDYVRV VWGGPGPAPP DAALCTSPRP RPAVAARSGP ENSBTAP00000035318/1-843 PSPLAGTQQL PYLDWDYVRV VWGGPAPA-- -ARLRTSAQP RPAAPARSGP BACU013071/1-731 PSP--GT-QL PYLDWE---- ---------- ---------- ---------- bmy_17662T0/1-663 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013962/1-851 PSP--GTHQL PYLDWDYVRV VWGGPAPT-- -AGLRTSPQP RPAAAARSGP 101 150 ENSP00000367950/1-852 QPTEVPGTPG PLNRQATPLL YALAAEAEAA AQAAEPPSPP ASRAAYRQRL ENSBTAP00000035318/1-843 RAPE--KGPG PLSRQTTPLL YALAAEAEAE ARAAEPPSPP ASRAAYRQRL BACU013071/1-731 ---------- ---------- ---------- ---------- ---------- bmy_17662T0/1-663 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013962/1-851 RPPEIRGTPG PLSRQTTPLL YALAAEAEAA ARAAEPPSPP ASRAAYRQRL 151 200 ENSP00000367950/1-852 QGAQRRVLRE TSFQRKELRM SLPARLRPTV PARPPATHPR SASLSHPGGE ENSBTAP00000035318/1-843 QGAQRRVLRE TSFQRKELRM SLPSRLRPAA PARPSAEHPR SASLSHPGGE BACU013071/1-731 ---------- ---------- ---------- ---------- ---------- bmy_17662T0/1-663 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013962/1-851 QGAQRRVLRE TSFQRKELRM SLPARLRPAA PARPSAAHPR SALLSHPGGE 201 250 ENSP00000367950/1-852 GEPARSRAPA PGTAGRGPLA NQQRKWCFSE PGKLDRVGRG GGPARECLGE ENSBTAP00000035318/1-843 VEPARSGAPT ---------- -QQRKWCFSE PGKLDRLGRG AGLARQCSGE BACU013071/1-731 ---------- ---------- ---------- ---------- ---------- bmy_17662T0/1-663 --PARPGAPA PGTAGRGRLA NQQRKWCFSE PGKLDRMGRG GGLAGECSGE ENSTTRP00000013962/1-851 AEPARPGAPA PVTAGRGRLA NQQRQWCFSE PGKLDCVGRG GGLAGECSGE 251 300 ENSP00000367950/1-852 ACSSSGLPGP EPLEFQHPAL AKFEDHEVGW LPETQPQGSM NLDSGSLKLG ENSBTAP00000035318/1-843 ACSSSGFIGP EPREWQQRTL AEFEGHQIRW LPATQPPSVE DPNPRSLKLG BACU013071/1-731 ---------P ETREWQQRTL AEFEGHQIRW LPATQPQSIE DPKPRSLRLS bmy_17662T0/1-663 ACPSSGLARP ETREWQQRTL AEFEGHQIRW LPATQPRSIE DPKPRALRLS ENSTTRP00000013962/1-851 ACSSSGLARP EPREWQQRTL AEFEGHQIRW LPATQPRSLE DPKPRSLRLS 301 350 ENSP00000367950/1-852 DAFRPA-SRS RSASGEVLGS WGGSGGTIPI VQAVPQGAET PRPLFQTKLS ENSBTAP00000035318/1-843 NAYRPATSRS RSASGEVLAP WGSPEGVMPI AQAVPQGAET PRPPLQTKLN BACU013071/1-731 NAYRPA-GRS RSASGEVLSP WGSPGGIMPI AQAVPQGAET PRPLFQTKLS bmy_17662T0/1-663 NAYRPN-GRS RSASGEVLSP WGSPGGVMPI AQAVPQGAET PRPLFQTKLS ENSTTRP00000013962/1-851 NAYRPA-GRS QSASGEVLSP WGSPEGVMPI AQAVPQGAET PRPLFQTKVS 351 400 ENSP00000367950/1-852 RFLPQKEAAV MYPAELPQSS PADSEQRVSE TCIVPAWLPS LP-DEVFLEE ENSBTAP00000035318/1-843 RFLNQKEAAE VCPAEGPQSS PSDCEQRGSE NCIGSVRLPS LPDDEVFLEE BACU013071/1-731 RFLTQKEVAV VCSAEGLQSS PSDCEQRASE NCIVSARLPS LPDDEVFLEE bmy_17662T0/1-663 RFLTQKEVAV VCSAEGLQSS PSDXEQRASE NCIVSARLPS LPDDEVFLEE ENSTTRP00000013962/1-851 RFLTQKEVAV VCSAEGPQSS PSDWEHRASE NCIVSARLPS LPDDEVFLEE 401 450 ENSP00000367950/1-852 APLVRMRSPP DPHASQGPPA ------SVHA SDQPYGTGLG QRTGQVTVPT ENSBTAP00000035318/1-843 APLVRARSPA DSQTPLGLPT ------CVHV SDQEYGAGLS QRTDQAIIPP BACU013071/1-731 APLVRMRSPA DSHAPLGLPN ------SVHA SDQQYGAGLG QRADQAIIPS bmy_17662T0/1-663 APLVRMRSPA DSHAPLGLPN SVSSTSSVHA SDQQYGAGLG QRADQAIIPS ENSTTRP00000013962/1-851 APLVRMRSPA DSHAPLGLPN ------SVHA SDRQYGAGLG QRTDQAIIPS 451 500 ENSP00000367950/1-852 EYPLHECPGT AGADDCWQGV NGSVGISRPT SHTPTGTAND NIPTIDPTG- ENSBTAP00000035318/1-843 EKPFHEDPET AGVDECWQGL NGSVNVSRPT CCSPPETANG DILTFDPTGL BACU013071/1-731 EQPLHEHPET AGADDCWQGV NGSVSVSRPT CCSPPGTANG DIATFDPTGL bmy_17662T0/1-663 EQPLHEHPET AGADDCWQGV NGSVSVSRPT CCSPPGTANG DIATFDPTGL ENSTTRP00000013962/1-851 EQPLHEHPET AGADDCWQGV NGSVSVSRPT CCSPPGTANG DIATFDPTGL 501 550 ENSP00000367950/1-852 LTTNPPTAAE SDLLKPVPAD ALGLSGNDTP GPSHNTALAR GTGQPGSRPT ENSBTAP00000035318/1-843 LTTVPPTAAE TD-LKPFPGD TLGPPDSDTP GLPGRSALAW GPREPGPQST BACU013071/1-731 LTTDPPTAAE TDPLKPLPGD ALRPAGNDTP GPSDHTAQAW GTGQTGSRST bmy_17662T0/1-663 LTTDPPTAAE TDPLKPLPGD ALRPPGNDTP GPSDHTAQAW GTGQTGSRST ENSTTRP00000013962/1-851 LTTDPPTAAE TDPLKPLPCD ALRPPGNDTL GPSDHTALAW GTGQTGSRST 551 600 ENSP00000367950/1-852 WPSQCLEELV QELARLDPSL CDPLASQPSP EPPLGLLDGL IPLAEVRAAM ENSBTAP00000035318/1-843 WASPRLEELV QELARLDPSQ SDTFTSYPSP EPALGLLDGL IPLAEVWAAM BACU013071/1-731 WPSPRLEELV QELARLDPSL SDTLTSYPSP EPSLGLLDGL IPLAEVWAAM bmy_17662T0/1-663 WPSPRLEELV QELARLDPSL SDTLTSYPSP EPSLGLLDGL IPLAEVWAAM ENSTTRP00000013962/1-851 WPSPRLEELV QELARLDPSL SDTLTSYPSP EPSLGLLDGL IPLAEVWAAM 601 650 ENSP00000367950/1-852 RPACGEAGEE AASTFEPGSY QFSFTQLLPA PREETRLENP ATHPVLDQPC ENSBTAP00000035318/1-843 RPACREAGEE AAGNSEPGSY LLNSTQHLPT SQEETRPENL TTHVAPDQPC BACU013071/1-731 RPACGEAGEE AAGTSESGSY LLNSTQRLPD SQQETRPENL TTHAVPDEPC bmy_17662T0/1-663 RPACGEAGEE AAGTSESGSY LLNSTQRLPA SQEETRPENL TTHAVPDKPC ENSTTRP00000013962/1-851 RPACGEAGEE AAGTSASSSY LLNSTQRLPA SQEETRPENL TTYAVPDEPC 651 700 ENSP00000367950/1-852 GQGLPAPNNS IQGKKVELAA RLQKMLQDLH TEQERLQGEA QAWARRQAAL ENSBTAP00000035318/1-843 DQDVPKPNNS IQAKKAELAD LLQKMLRDLQ AEQKQLQGAA QAWARRGAAL BACU013071/1-731 GPGLPEPNYS IQAKKVELAD LLQKTLRELQ AKQEQLQGAA QAWARRGAAL bmy_17662T0/1-663 SPGLPEPNYS IQAKKVELAD LLQKTLRELQ AEQEQLQGKA QAWARRGAAL ENSTTRP00000013962/1-851 GPGLPEPINS IQAKKVELAD LLQKTLRELQ AEQEQLQGAA QAWARRGAAL 701 750 ENSP00000367950/1-852 EAAVRQAC-- ---------- ---------- ---------- ---------- ENSBTAP00000035318/1-843 EAAVGQAC-- ---------- ---------- ---------- ---------- BACU013071/1-731 EAAVGQACXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17662T0/1-663 EAAVGQAC-- ---------- ---------- ---------- ---------- ENSTTRP00000013962/1-851 EAAVGQAC-- ---------- ---------- ---------- ---------- 751 800 ENSP00000367950/1-852 ---------- ---------- ---------A PQELERFSRF MADLERVLGL ENSBTAP00000035318/1-843 ---------- ---------- ---------A PHELERFSRF MADLERVLGL BACU013071/1-731 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17662T0/1-663 ---------- ---------- ---------A PHELERFSRF MADLERVLGL ENSTTRP00000013962/1-851 ---------- ---------- ---------A PHELERFSRF MADLERVLGL 801 850 ENSP00000367950/1-852 LLLLGSRLAR VRRALARAAS DSDPDEQASL LQRLRLLQRQ EEDAKELKEH ENSBTAP00000035318/1-843 LLLLGSRLAR VHRALARVGA DSDPEEQASL LQRLGLLQRQ EKDAKELKQH BACU013071/1-731 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17662T0/1-663 LLLLGSRLDR VHRALARAGA DGDPDEQASL LQRLGLLQRQ QEDAKELKQH ENSTTRP00000013962/1-851 LLLLGSRLDR VHRALARAGA DGDPDEQASL LQRLGLLQRQ QEDAKELKQH 851 900 ENSP00000367950/1-852 VARRERAVRE VLVRALPVEE LRVYCALLAG KAAVLAQQRN LDERIRLLQD ENSBTAP00000035318/1-843 VARRERALRE LLARALPAEE LSAYRTLLAG KAAVLAQQRS LDERVRLIQD BACU013071/1-731 XXXXXXXXRE VLARALPADE LRAYRALLVG KAAVLAQQRS LDERVRLLQD bmy_17662T0/1-663 VARRERALRE VLARALPADE LRAYRALWVG KAAVLAQQRS LDERVRLLQD ENSTTRP00000013962/1-851 VARRERALRE VLARALPADE LRAYRALLVG KAAVLARQRS LDERVRLLQD 901 950 ENSP00000367950/1-852 QLDAIRDDLG HHAPSPSPAR PPGTCPPVQP PFPLLLT ENSBTAP00000035318/1-843 QLDAVRNDLG RHPSSPRPAF PSGTHPPDKP PFPPPLI BACU013071/1-731 QLDTVRTDLG RRPPTPRPAW PPGTRPPDKP PFPPPLI bmy_17662T0/1-663 QLDTVRTDLG RRPPTPRPAW PPGTRPPDKP PFPPPLI ENSTTRP00000013962/1-851 QLDTVRTDLG RRPATPRPAW PPGTRPPDKP PFPPPLI