KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:45:33 2014 Check: 00 .. Name: ENSP00000424565/1-1310 Len: 1375 Check: 4793 Weight: 1.00 Name: ENSBTAP00000035423/1-1279 Len: 1375 Check: 8942 Weight: 1.00 Name: ENSTTRP00000013324/1-1309 Len: 1375 Check: 157 Weight: 1.00 Name: bmy_08397T0/1-1184 Len: 1375 Check: 9923 Weight: 1.00 Name: BACU002865/1-1370 Len: 1375 Check: 7674 Weight: 1.00 // 1 50 ENSP00000424565/1-1310 ---------- -----MAQLW LSCFLLPALV VSVAANVAPK FLANMTSVIL ENSBTAP00000035423/1-1279 ---------- -----MGWPW LSCLLFPALV VSVAANTAPM FAPNMSTVSL ENSTTRP00000013324/1-1309 ---------- -----MVWPW LSCFLLPALM VSVSANAAPT FLSNMSLVTL bmy_08397T0/1-1184 MLVGSAAAGR VPPDMMVWPW LSCLLLPALM VSVAANMAPT FLSNMSAVNL BACU002865/1-1370 ----MPPNSP SPGTSGKWAE FDRGLGGTLS DGVAANVAPT FLSNMSAVNL 51 100 ENSP00000424565/1-1310 PEDLPVGAQA FWLVAEDQDN DPLTYGMSGP NAYFFAVTPK TGEVKLASAL ENSBTAP00000035423/1-1279 PEDLPVGAEA FWLVAQDQDN DELKYGISGS NAYFFNVTSN TGEVKLASPL ENSTTRP00000013324/1-1309 PEDLPVGTEV FWLIAQDQEN DPLTYRISGS YAYFFNVTPN TGEVKLANLL bmy_08397T0/1-1184 PEDLPVGAEV FWLVAQDQDN DPLTYGISGS YDY-FNVTPN TGEVKLAKLL BACU002865/1-1370 PEDLPVGAEV FWLIAQDQDN DPLTYGISGS YAYFFNVTPN TGEVKLAKLL 101 150 ENSP00000424565/1-1310 DYETLYTFKV TISVSDPY-I QVQREMLVIV EDRNDNAPVF QNTAFSTSIN ENSBTAP00000035423/1-1279 DYETLYWFAI TISVSDSYNN QVQREMQVIV EDRNDNAPVF QSISFSANVS ENSTTRP00000013324/1-1309 DYETLYLFSI DISVSDGHNN PVRKEMVVIV EDRNDNAPVF --TDYSTRIN bmy_08397T0/1-1184 DYETLYWFAI NIFASDGHNN PVQMEMQVIV EDRNDNAPIF QNTDFSTSIS BACU002865/1-1370 DYETLYWFAI NIFVSDGHNN PVQMEMLVIV EDRNDNAPIF QNTDFSTSIS 151 200 ENSP00000424565/1-1310 ETLPVGSVVF SVLAVDKDMG SAGMVVYSIE KVIPSTGDSE HLFRILANGS ENSBTAP00000035423/1-1279 ETLPVGSLVL SVQATDKDTG SAGAVVYSIE KVIPATEGSE YLFRVLPNGS ENSTTRP00000013324/1-1309 ETLPVGSLVF SVLAKDKDTG AGGAVVYSIE KVIPSTDSSE YLFGILPNGS bmy_08397T0/1-1184 ETLPVGSLLL SVLATDKDTG SGGAVVYSIE KVIPSTDSSE YLFKILPNGS BACU002865/1-1370 ETLPVGSLLL SVLAKDKDTG SGGAVVYSIE KVIPSTDSSE YLFRILPNGS 201 250 ENSP00000424565/1-1310 IVLNGSLSYN NKSAFYQLEL KACDLGGMYH NTFTIQCSLP VFLSISVVDQ ENSBTAP00000035423/1-1279 IILNGSLDYN SKSSFYQLEL RACDSGGLYN NHTVIQCSSS VFVSISVIDK ENSTTRP00000013324/1-1309 IILNGSLSYN NKSAFYQLEL KACDSGGEYN NSIVVQCSSP VFVSISVIDQ bmy_08397T0/1-1184 IILNGSLSYN NKSAFYQLEL KACDSGGTYN NSIVVQCSSP VFVSIFVIDK BACU002865/1-1370 IILNGSLSYN NKSAFYQLEL KACDSGGTYN NSFVVQCSSP VFVSISVIDK 251 300 ENSP00000424565/1-1310 PDLDPQFVRE FYSASVAEDA AKGTSVLTVE AVDGDKGIND PVIYSISYST ENSBTAP00000035423/1-1279 PDLDPQFVRE FYSASVAEDT PQGTSVLKVE AMDGDRGIND PVIYSISNST ENSTTRP00000013324/1-1309 PDLDPQFVRE FYSASVPEDA PQGTSVLKVE AMDGDRGIND PVIYSISNST bmy_08397T0/1-1184 RDLDPQFVRE FYSASVAEDA PQGTSVLKVE AVDGDRGIND PVIYSISNST BACU002865/1-1370 PDLDPQFVRE FYSASVAEDA PQGTSVLKVE AMDGDRGIND PVIYSISNST 301 350 ENSP00000424565/1-1310 RPGWFDIG-A DGVIRVNGSL DREQLLEADE EVQLQVTATE THLNIYGQEA ENSBTAP00000035423/1-1279 RPGWFDIGKQ DGVITVNSPL DREQLLEEDE EVQVQVTATE THPNIHGQEA ENSTTRP00000013324/1-1309 RPGWFDIG-P DGVIRVNGSL DREQLLEEDE EVQVQVMATE IHPNVYGQEA bmy_08397T0/1-1184 RPGWFDIG-P DGVIRVSGSL DREQLLEEDE EVQVQVTATE MHPNVYGQEA BACU002865/1-1370 RPGWFDIG-P DGVIRVSGSL DREQLLEEDE EVQVQVTATE MHPNVYGQEA 351 400 ENSP00000424565/1-1310 KVSIWVTVRV MDVNDHKPEF YNCSLPACTF TPEEAQVNFT GYVDEHASPR ENSBTAP00000035423/1-1279 KASIWVTLRV TDVNDHVPEF YNCSLQDCAF TPNETQVNFT GYVDEHASTR ENSTTRP00000013324/1-1309 KVSIWVKLRV TDVNDHKPEF YNCSLPTCTF TPQEAQVNFT GYVDEHASTR bmy_08397T0/1-1184 KVSIWVTLRV TDVNDHKPEF YNCSLPTCTF TPQEAQVNFT GYVDEHASTR BACU002865/1-1370 KVSIWVTLRV TDVNDHKPEF YNCSLPTCTF TPQEAQVNFT GYVDEHASTR 401 450 ENSP00000424565/1-1310 IPIDDLTMVV YDPDK----- ---------G SNGTFLLSLG GPDAEAFSVS ENSBTAP00000035423/1-1279 IPIEDLTMVV YDPDK----- ---------G SNGTFLLTLG GPDAEAFSVS ENSTTRP00000013324/1-1309 IPIDDLTMVV YDPDK----- ---------G SNGTFLLSLR GPNVEAFSVS bmy_08397T0/1-1184 IPIDDLTMVV YDPDKAGAPR PCAAWVEVMG SNGTFLLSLG GPDVEAFSVS BACU002865/1-1370 IPIDDLTMVV YDPDKAGAPR PCAAWVEVMG SNGTFLLSLG GPDVEAFSVS 451 500 ENSP00000424565/1-1310 PERAVGSASV QVLVRVSALV DYERQTAMAV QVVATDSVSQ NFSVAMVTIH ENSBTAP00000035423/1-1279 PQRAAGSVDV QVLVREPSLV DYERQSVMLV QVTATDSVSG NASVASVTIH ENSTTRP00000013324/1-1309 PERAAGSVDV QVLVRAPSLV DYETQTVMLV QVVATDSVSR SSSVALVTIH bmy_08397T0/1-1184 PERAVGSVDV QVLVRAPSLV DYETQTVMLV QVVATDSVSR SSSVALVTIH BACU002865/1-1370 PERAVGSVDV QVLVRAPSLV DYETQTVMLV QVVATDSVSR SSSVALVTIH 501 550 ENSP00000424565/1-1310 LRDINDHRPT FPQSLYVLTV PEHSATGSVV TDSIHATDPD TGAWGQITYS ENSBTAP00000035423/1-1279 LRDTNDHRPT FPSSMYNLSV FEHSPVGYVV TDSIRASDPD TGEGGRVTYS ENSTTRP00000013324/1-1309 LRDINDHRPT FPHNLYNLSV SEHSAVGYVV TDSIQASDPD TGEGGRITYS bmy_08397T0/1-1184 LRDINDHRPT FPHNLYNLSV FEHSAVGYVV TNGIRASDPD TGEGGRITYS BACU002865/1-1370 LRDINDHRPT FPHDLYNLSV FEHSAVGYVV TNGIRASDPD TGEGGRITYS 551 600 ENSP00000424565/1-1310 LLPGNGADLF QVDPVSGTVT VRNGELLDRE SQAVYYLTLQ ATDGGNLSSS ENSBTAP00000035423/1-1279 LLPGNGADIF AVDPDSGKVT VRNSELLDRE KQAVYYLTLQ ATDGGNLSSS ENSTTRP00000013324/1-1309 LLPGNGVDIF AVDPASGTVT VRNSELLDQE KQAVYYLTLL ATDGGNLSSS bmy_08397T0/1-1184 LLPGNGSAAR TMVP------ ---------- ---------- -----SVSPE BACU002865/1-1370 LLPGNGANIF AVDPDSGTVT VRNSELLDRE KQAVYYLTLL ATDGGNLSSS 601 650 ENSP00000424565/1-1310 TTLQIHLLDI NDNAPVVSGS YNIFVQEEEG NVSVTIQAHD NDEPGTNNSR ENSBTAP00000035423/1-1279 TTLQIHVLDV NDNSPVVSGS YNIFVQEEEG NVSVTIQAHD NDQPDTNNSL ENSTTRP00000013324/1-1309 TMLQIVVLDI NDNKPVVSGS YNIFVQEEEG NVSVTIQAHD DDQPGTNHSL bmy_08397T0/1-1184 KCL------- ---------- ---------- -------AHD DDQPGTNHSL BACU002865/1-1370 TMLQIVVLDI NDNKPVVSGS YNIFVQEEEG NVSVTIQAHD DDQPGTNHSL 651 700 ENSP00000424565/1-1310 LLFNLLPGPY SHNFSLDPDT GLLRNLGPLD REAIDPALEG RIVLTVLVSD ENSBTAP00000035423/1-1279 LHFSLLPSPF SHNFSVDPDK GILRNLGPLD REAIDPALGG RIVLSVNVSD ENSTTRP00000013324/1-1309 LRFSLLSSPY SHNFSVDPDK GILRNLGPLD REAINPTLGG RIVLTVRVSD bmy_08397T0/1-1184 LHFSLLSSPY SHNFSVDPDK GILRNLGPLD REAINPTLGG RIVLTVRVSD BACU002865/1-1370 LHFSLLSSPD SHNFSVDPNK GILRNLGPLD REAINPTLGG RIVLTVRVSD 701 750 ENSP00000424565/1-1310 CGEPVLGTKV NVTITVEDIN DNLPIFNQSS YNFTVKEEDP GVLVGVVKAW ENSBTAP00000035423/1-1279 SGEPALWTTV SVTITVEDIN DNLPIFNQSR YSFSVRERDP GVQVGMVEAW ENSTTRP00000013324/1-1309 CGEPALWTDV NVTITVEDIN DNLPIFNQSS YSFSVRERDP GVLVGVVEAW bmy_08397T0/1-1184 CGEPALWTDV NVTITVEDIN DNLPIFNQSS YSFSVRERDP GVLVGVVEAW BACU002865/1-1370 CGEPALWTDV NVTITVEDIN DNLPIFNQSS YSFSVRERDP GVLVGVVEAW 751 800 ENSP00000424565/1-1310 DADQTEANNR ISFSLSGSGA NYFMIRGLVL GAGWAEGYLR LPPDVSLDYE ENSBTAP00000035423/1-1279 DADQTEANNR ISFSLSGSGA NNFMIRGSVL GSGQAVGRLS LPLDVSLDYE ENSTTRP00000013324/1-1309 DADQTEANNR ISFSLSGGGA NNFLIRGLVL GSGLAEGHLW LPLDVSLDYE bmy_08397T0/1-1184 DADQTEANNR ISFSLSGGGA NNFLLRGLVL GSGRAEGHLL LPSDVSLDYE BACU002865/1-1370 DADQTEANNR ISFSLSGGGA NNFLLRGLVL GSGRAEGHLQ LPSGVSLDYE 801 850 ENSP00000424565/1-1310 TQPVFNLTVS AENPDPQGGE TIVDVCVNVK DVNDNPPTLD VASLRGIRVA ENSBTAP00000035423/1-1279 TQASFSLIVS AENADAQGRE TTAEVLVTVG DVNDVPPTLD SASLQGIRVA ENSTTRP00000013324/1-1309 TQDFFNLTVS AESPDPQGHD ATAKVLVNVE DVNDVPPTLD PTSLRGIRVA bmy_08397T0/1-1184 TQDSFSLTVS AENPDPQGRD ATAKVLVNVE DVNDVPPTLD STSLQGIRVA BACU002865/1-1370 TQDSFNLTVS AENPDPQGRD ATAKVLVNVE DVNDVPPTLD SASLRGIRVA 851 900 ENSP00000424565/1-1310 ENGSQHGQVA VVVASDVDTS AQLEIQLVNI LCTKAGVDVG SLCWGWFSVA ENSBTAP00000035423/1-1279 ENGSQHGILV NVVAQDRDTM SQVEVQLVNV ICTKAGVDVG SLCHGWFSVL ENSTTRP00000013324/1-1309 ENGSQHGMVA EVVAQDRDTM SQVEVQLVNV ICTKAGVDVG SLCHGWFSVL bmy_08397T0/1-1184 ENGSQHGIVA EVVAQDRDTM SQVEVQLVNV ICTKAGVDVG SLCHGWFSVL BACU002865/1-1370 ENGSQHGIVA EVVAQDRDTM SQVEVQLVNV ICTKAGVDVG SLCHGWFSVL 901 950 ENSP00000424565/1-1310 ANGSVYINQS KAIDYEACDL VTLVVRACDL ATDPGFQAYS NNGSLLITIE ENSBTAP00000035423/1-1279 ANGSVIINQS EAIDYEACDL VTLVVRAYDL TTDPRFQAYS DNGSLPITIE ENSTTRP00000013324/1-1309 ANGSVFVHQS EVIDYETCDL VTLVVRAYDL TTDPRFQAYS DNGSLPITIE bmy_08397T0/1-1184 ANGSVFINQR ---------- ---------- ---------- ---SLPITIE BACU002865/1-1370 ANGSVFISQS EVIDYETCDL VTLVVRAYDL TTDPRFQAYS DNGSLPITIE 951 1000 ENSP00000424565/1-1310 DVNDNAPYFL PENKTFVIIP ELVLPNREVA SVRARDDDSG NNGVILFSIL ENSBTAP00000035423/1-1279 DVNDNAPYFL PEDKTFVIIP ELVMPNQQVA SVRARDDDSG NNAAILFSIF ENSTTRP00000013324/1-1309 DVNDNAPYFL PENKTFVIIP ELVIPNQQVA SVQARDNDSG NNGAILFSIL bmy_08397T0/1-1184 DVNDNAPYFL PENKTF---- ---------- ---------- ---------- BACU002865/1-1370 DVNDNAPYFL PENKTFVIIP ELVIPNQQVA SVQARDDDSG NNGAILFSIL 1001 1050 ENSP00000424565/1-1310 RVDFISKDGA TIPFQGVFSI FTSSEADVFA GSIQPVTSLD STLQGTYQVT ENSBTAP00000035423/1-1279 QVDFIAKDGA VIPFQGFFRV STSSEASVFT GNIDLVTSLD STLQGTYQVT ENSTTRP00000013324/1-1309 QVDFIAKDGA VIPFQGFFHV STSLEASVFI GNIELVTNLD STLQGTYQVT bmy_08397T0/1-1184 ---------- ---------- ---------- ---------- ----GTYQVT BACU002865/1-1370 QVDFIAKDGA VIPFRGFFRV STSLEASVFI GTIELVTNLD STLQGTYQVT 1051 1100 ENSP00000424565/1-1310 VQARDRPSLG PFLEATTTLN LFTVDQSYRS RLQFSTPKEE VGANRQAINA ENSBTAP00000035423/1-1279 VKAQDSPSEG PAQEARITLN LFTVDQSYRV RLQFSLNKEE VGANSEKIKE ENSTTRP00000013324/1-1309 VKAQDRPSEG PAQEAKITLN LFTVDQSYRV RLQFSMSKEE VGANTEEIKA bmy_08397T0/1-1184 VKAQDRPSEG PAQEAKITLN LFTVDQSYRV RLQFSMSKEE VGANTEEIKA BACU002865/1-1370 VKAQDRSTEG PAQEATITLN LFTVDQSYRV RLQFSMSKEE VGANTEEIKA 1101 1150 ENSP00000424565/1-1310 ALTQATRTTV YIVDIQDIDS AARARPHSYL DAYFVFPNGS ALTLDELSVM ENSBTAP00000035423/1-1279 ALAQATRTTV YIVNIQDIDS QVRARGRSYL DAYFVFSNGS ALTLDQLSMM ENSTTRP00000013324/1-1309 ALVQATRTTV YIVNIQDVES MARARARSYL DAYFVFSNGS ALTLDQLSVM bmy_08397T0/1-1184 TLVQATRTTV YIVNIQDIES MARARGRSYL DAYFVFSNGS ALTVDQLSVT BACU002865/1-1370 ALVQATRTTV YIVNIQDIES TARARGRSYL DAYFVFSNGS ALTIDQLSVT 1151 1200 ENSP00000424565/1-1310 IRNDQDSLTQ LLQLGLVVLG SQESQESDLS KQLISVIIGL GVALLLVLVI ENSBTAP00000035423/1-1279 IRNDQDSLTQ LLQLGLVVLG SQDNQESESQ DTLRNVTIGL GVALLLAIVI ENSTTRP00000013324/1-1309 IRNDQDSLTK LLQLGLVVLG SQGSQESELP DTLHNAIIGL GVALLLVIVI bmy_08397T0/1-1184 IRNDEDSLTK LLQLGLVVLG SQERQKSELS DTLRNTIIGL GVALLLVIVI BACU002865/1-1370 IRNDEDSLTK LLQLGLVVLG SQEGQKSELP DTLRNTIIGL GVALLLVIVI 1201 1250 ENSP00000424565/1-1310 MTMAFVCVRK SYNRKLQAMK AAKEARKTAA GVMPSAPAIP GTNMYNTERA ENSBTAP00000035423/1-1279 FSTIIMCTQK SYQRKLRAMK AAKEARKTAV GVMPPGSAIP GTNMYNTERA ENSTTRP00000013324/1-1309 MTTVLVCTQK SYHRKLRAMK ASKEARKTAA GVMPPVSAIP GTNVYNTERA bmy_08397T0/1-1184 MTTVLVCTQK SYHRKLRAMK ASKEARKTAA GVMPPVSAIP GTNVYNTERA BACU002865/1-1370 MTTVLVCTQK SYHRKLRAMK ASKEARKTAA GVMPPVSAIP GTNVYNTERA 1251 1300 ENSP00000424565/1-1310 NPMLNLPNKD LGLEYLSPSN DLDSVSVNSL DDNSVDVDKN SQEIKE---- ENSBTAP00000035423/1-1279 NPMLNLPAKD LGFESHSSSS DLDHISVNSL DDNSVDLENS AQEIKARWGM ENSTTRP00000013324/1-1309 NPVLNLPTKD LGFESQSSSS DLDHVSLNSL DDNSVDLENS RQEIK----- bmy_08397T0/1-1184 NPVLNLPTKD LGFESQSSSS DLDHISLNSL DDNSVDLENS RQETKARWGM BACU002865/1-1370 NPVLNLPTKD LGFESQSSSS DLDHISLNSL DDNSVDLENS RQEIKARWGM 1301 1350 ENSP00000424565/1-1310 ---------- ---------- ---------H RPPHTPPEPD PEPLSVVLLG ENSBTAP00000035423/1-1279 SWYLGFLT-- ---------- ---------- ---------- ---------- ENSTTRP00000013324/1-1309 ---------- ---------- ---------N EPLHSLMEPD PEPLNRVLSG bmy_08397T0/1-1184 SWCLGLLTWG SSLKE----- --------WK EPLHSLMGPD PEPLNTVLSG BACU002865/1-1370 SWCLGLLTWG SSLKEWVSGQ SSRDLLLPWK EPLHSLMGPD PEPLNRVLSE 1351 1400 ENSP00000424565/1-1310 RQAGASGQL- EGPSYTNAGL DTTDL ENSBTAP00000035423/1-1279 ---------- ---------- ----- ENSTTRP00000013324/1-1309 MKVGTRGQQK EELAFTNTGL NTTDV bmy_08397T0/1-1184 MKAGTRGQQE EKLAFTNPGL NTTDL BACU002865/1-1370 MKAGTHGQQK EELAFTNPGL NTTDL