KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:45:42 2014 Check: 00 .. Name: ENSP00000349727/1-496 Len: 505 Check: 9115 Weight: 1.00 Name: ENSTTRP00000014999/1-484 Len: 505 Check: 8130 Weight: 1.00 Name: ENSBTAP00000035549/1-441 Len: 505 Check: 8790 Weight: 1.00 Name: bmy_08369T0/1-483 Len: 505 Check: 9430 Weight: 1.00 Name: BACU002885/1-332 Len: 505 Check: 9886 Weight: 1.00 // 1 50 ENSP00000349727/1-496 MTRGARLRSD ARAQLNQLSL DGGTGSGQKG KCEEFPSSLS SVSPGLEAAA ENSTTRP00000014999/1-484 -LIRASLRSE AHTQLTQLSL DRGRGSGQKG KCEEFPSGPS PVSSGPGAAA ENSBTAP00000035549/1-441 ---------- ---------- ---------- ---------- ---------- bmy_08369T0/1-483 --SFSEDRAP LPQPCSCLSG QREGEVARRG SVRSSPLARH QSPQALGAAA BACU002885/1-332 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000349727/1-496 LLLAVTMDPL ETPIKDGILY QQHVKFGKKC WRKVWALLYA GGPSGVARLE ENSTTRP00000014999/1-484 M----AMEPL ETPIKDGILY KQHIKFGKKS WRKVWGLLYA GGPSGVARLE ENSBTAP00000035549/1-441 ------MEPL ETPVKDGILY QQHVKFGKKC WRKVWGLLYA GGPSGVARLE bmy_08369T0/1-483 M----AMEPL ETPIKDGILY QQHIKFGKKS WRKVWGLLYA GGPSGVARLE BACU002885/1-332 M----AMEPL ETPIKDGILY QQHIKFGKKS WRKVWGLLYA GGPSGVARLE 101 150 ENSP00000349727/1-496 SWEVRDGGLG AAGDRSAGPG RRGERRVIRL ADCVSVLPAD GESCPRDTGA ENSTTRP00000014999/1-484 SWEVRDGGLG PTGDRSVGPG RRGERRVIRL ADCVSVLPAD GESCPRDTGA ENSBTAP00000035549/1-441 SWEVRDGGLG PAGDRSAGPG RRGERRIIRL ADCVSVLPAD GESCPRDTGA bmy_08369T0/1-483 SCEVRDGGLG PAGDRSVGPG RRGERRVIRL ADCVSVLPAD GESCPRDTGA BACU002885/1-332 SWEVRDGGLG PAVDRSVGPG RRGERRVIRL ADCVSVLPAD GESCPRDTGA 151 200 ENSP00000349727/1-496 FLLTTTERSH LLAAQHRQAW MGPICQLAFP GTGEASSGST DAQSPKRGLV ENSTTRP00000014999/1-484 FLLTTTERSH LLAAQHRQSW MAPICQLAFP GTGESSQGPG EAEAPKKGLV ENSBTAP00000035549/1-441 FLLTTTERSH LLAAEHRQAW MGPICQLAFP GTGESSSGSG EAEARQRSLV bmy_08369T0/1-483 FLLTTTERSH LLAAQHRQSW MGPICQLAFP GTGESSQGSG EAEAPKRGLV BACU002885/1-332 FLLTTTERSH LLAAQHRQSW MGPICQLAFP GTGESSQGSG EAEAPKRGLV 201 250 ENSP00000349727/1-496 PMEENSIYSS WQEVGEFPVV VQRTEAATRC QLKGPALLVL GPDAIQLREA ENSTTRP00000014999/1-484 QMEENSIYSS WQEVSEFPVM VQRT-AAARC QLKGP-LLLL GQDSIQLNEP ENSBTAP00000035549/1-441 PMEENSIYSS WQEVGEFPVV VQRTEAATRC QLKGPYLLRL GQDAIQLSEP bmy_08369T0/1-483 QMEENSIYSS WQEVGEFPVV VQRTEAATRC QLKGPYLLLL GQDSILLNEP BACU002885/1-332 QMEENSIYSS WQEVGEFPVV VQRTEAAARC QLKGPYLLLL GQDSIQLNEP 251 300 ENSP00000349727/1-496 KGTQALYSWP YHFLRKFGSD KGVFSFEAGR RCHSGEGLFA FSTPCAPDLC ENSTTRP00000014999/1-484 ASPQALYT-- -SYLPKFGDX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000035549/1-441 ANPQALYTWP YCFLRKFGSD KGVFSFEAGR RCDSGEGLFA FSSARARDLC bmy_08369T0/1-483 ASPQALYTWP YRFLRKFGSD KGVFSFEAGR RCDSGEGLFA FISPRSRDLC BACU002885/1-332 ASPQALYTWP YRFLRKFGSD KGVFSFEAGR RCDSGEGLFA FISPRSRDLC 301 350 ENSP00000349727/1-496 RAVAGAIARQ RERLPELTRP QPCPLPRATS LPSLDTPGEL REMPPGPEPP ENSTTRP00000014999/1-484 XXXXXXXXXX XXXXXX--XX XXXXXXXXXX XXXXXXXXEL REVPPGPEAP ENSBTAP00000035549/1-441 GALAAAIARQ RERLP---GP RPCPLPRATS LPSLEPPGEL REGPPRPEAP bmy_08369T0/1-483 GAVAAAIARQ RERLPEPAGP QPCPLPRATS LPSLEPPGEL REVPPGPEAP BACU002885/1-332 GA-------- ---------- ---------- ---------- -------EGP 351 400 ENSP00000349727/1-496 TSRKMHLAEP GPQSLPLLLG PE-PNDLASG LYASVCKRAS GPP--GNEHL ENSTTRP00000014999/1-484 GSRRARVAEP GPQSLPSLLG PE-PDEPAPA LYASVCKRAS QLPD-AAEHL ENSBTAP00000035549/1-441 GSRKMRAAEP GPQSLPPLLG PAVSEEPPAV LYASVCKRAS VPPSAAAEHL bmy_08369T0/1-483 GSRRARAAEP GPQSLPALLG PVAPDEPAPA LYASVCKRAS RPPD-AAEHL BACU002885/1-332 GGRS------ ---------- PL-------- ---------- ---------- 401 450 ENSP00000349727/1-496 YENLCVLEAS PTLHGGEPEP HEGPGSRSPT TSPIYHNGQD LSWPGPANDS ENSTTRP00000014999/1-484 YENLCVLDAG PAPDVGCPE- QEGPGGRSPL ASHIYHNSQD LGWPGAAHDS ENSBTAP00000035549/1-441 YENLCAPDAG CRKLV----- EEGPGGGNPP DSPIYHNSQD LGWPGAAHDS bmy_08369T0/1-483 YENLCVLDAG PAPDA----- ---------- ASPIYHNSQD LGWPGAAHDS BACU002885/1-332 ---------- ---------- ---------- ASPIYHNSQD LGWPGAAHDS 451 500 ENSP00000349727/1-496 TLEAQYRRLL EL------DQ VEGTGRPDPQ AGFKAKLVTL LSRERRKGPA ENSTTRP00000014999/1-484 SLEAQYKRLL EL------EQ AGGCARAGAH LGFKAKLVTL LSRERRKGPA ENSBTAP00000035549/1-441 SLEAQYRRLL ELELADNGDE ASGSGRPGAH SGFKAKLVTF LSRERKKGPA bmy_08369T0/1-483 SLEAQYRRLL ELELADNGDE AGGSARAGAH LGFKAKLVTL LSRERRKGPA BACU002885/1-332 SLEAQYRRLL ELELADNGDE AGGSARAGAH LGFKAKLVTL LSRERRKGPA 501 550 ENSP00000349727/1-496 PCDRP ENSTTRP00000014999/1-484 PCDRP ENSBTAP00000035549/1-441 PCDRP bmy_08369T0/1-483 PCDRP BACU002885/1-332 PCDRP