KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:45:52 2014 Check: 00 .. Name: ENSP00000365131/1-1132 Len: 1272 Check: 8308 Weight: 1.00 Name: ENSBTAP00000035657/1-1128 Len: 1272 Check: 5733 Weight: 1.00 Name: ENSTTRP00000013370/1-1163 Len: 1272 Check: 8435 Weight: 1.00 Name: bmy_03151T0/1-1247 Len: 1272 Check: 6742 Weight: 1.00 Name: BACU015898/1-993 Len: 1272 Check: 7736 Weight: 1.00 // 1 50 ENSP00000365131/1-1132 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035657/1-1128 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013370/1-1163 ---------- ---------- ---------- ---------- ---------- bmy_03151T0/1-1247 MDSTGGGGEM PKRVRMRSAT HASAVRSPGR RRRRRLFGVL GSLPSRPALA BACU015898/1-993 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000365131/1-1132 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035657/1-1128 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013370/1-1163 ---------- ---------- ---------- ---------- ---------- bmy_03151T0/1-1247 RLAPRNSLFG AADFLVVPHK SKAWGPGGSR KYRLAIPKYC RKRKWPSELS BACU015898/1-993 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000365131/1-1132 -MEPNDSTST AVEEPDSLEV LVKTLDSQTR TFIVGAQMNV KEFKEHIAAS ENSBTAP00000035657/1-1128 -MEPNDSTST TMEEPDSLEV LVKTLDSQTR TFIVGAQMNV KEFKEHIAAS ENSTTRP00000013370/1-1163 -MEPNDSTST TMEEPDSLEV LVKTLDSQTR TFIVGAQMNV KEFKEHIAAS bmy_03151T0/1-1247 AMEPNDSTST TMEEPDSLEV LVKTLDSQTR TFIVGAQMNV KEFKEHIAAS BACU015898/1-993 -MEPNDSTST TMEEPDSLEV LVKTLDSQTR TFIVGAQMNV KEFKEHIAAS 151 200 ENSP00000365131/1-1132 VSIPSEKQRL IYQGRVLQDD KKLQEYNVGG KVIHLVERAP PQTHLPSGAS ENSBTAP00000035657/1-1128 VSIPSEKQRL IYQGRVLQDD KKLQEYNVGG KVIHLVERAP PQTQLPSGAS ENSTTRP00000013370/1-1163 VSIPSEKQRL IYQGRVLQDD KKLQEYNVGG KVIHLVERAP PQTQLPSGAS bmy_03151T0/1-1247 VSIPSEKQRL IYQGRVLQDD KKLQEYNVGG KVIHLVERAP PQTQLPSGAS BACU015898/1-993 VSIPSEKQRL IYQGRVLQDD KKLQEYNVGG KVIHLVERAP PQTQLPSGAS 201 250 ENSP00000365131/1-1132 SGTGSASATH GGGSPPGTRG PGASVHDRNA NSYVMVGTFN LPSDGSAVDV ENSBTAP00000035657/1-1128 SGTGSTSATH GGGPTPGTRG PGASVHDRNA NSYVMVGTFN LPSDGSAVDV ENSTTRP00000013370/1-1163 SGTGSASATH GGGPPPGTRG PGASVHDRNA NSYVMVGTFN LPSDGSAVDV bmy_03151T0/1-1247 SGTGSASATH GGGPSPGTRG PGASVHDRNA NSYVMVGTFN LPSDGSAVDV BACU015898/1-993 SGTGSASATH GGGPPPGTRG PGASVHDRNA NSYVMVGTFN LPSDGSAVDV 251 300 ENSP00000365131/1-1132 HINMEQAPIQ SEPRVRLVMA QHMIRDIQTL LSRMETLPYL QCRGGPQPQH ENSBTAP00000035657/1-1128 HINMEQAPIQ SEPRVRLVMA QHMIRDIQTL LSRME----- -CRGGAQAQH ENSTTRP00000013370/1-1163 HINMEQAPIQ SEPRVRLVMA QHMIRDIQTL LSRME----- -CRGGPQAQQ bmy_03151T0/1-1247 HINMEQAPIQ SEPRVRLVMA QHMIRDIQTL LSRME----- -CRGGPQAQQ BACU015898/1-993 HINMEQAPIQ SEPRVRLVMA QHMIRDIQTL LSRME----- -CRGGPQAQQ 301 350 ENSP00000365131/1-1132 SQPPPQPPAV TPEPVALSSQ TSEPVESEAP PREPMEAEEV EERAPAQNPE ENSBTAP00000035657/1-1128 SQPPPQTPTV APEPVALTSQ TSEPVESEVP PREPMEAEEV EERAPAQSPE ENSTTRP00000013370/1-1163 SQAPPQTPAV ASEPVALSSP TSEPVESEVP PREPMEAEEV EERAPAQSPE bmy_03151T0/1-1247 SQPPPQTPAV APEPVALSSP TSESVESEVP PREPMEAEEV EERAPAQSPE BACU015898/1-993 SQPPPQTPAV APEPVALSSP TSEPVESEVP PREPMEAEEV EERAPAQSPE 351 400 ENSP00000365131/1-1132 LTP-GPAPAG PTPAPETNAP NHPSPAEYVE VLQELQRLES RLQPFLQRYY ENSBTAP00000035657/1-1128 LTPSGPAPAG PASAPETNAP NHPSPAEYVE VLQELQRLES RLQPFLQRYY ENSTTRP00000013370/1-1163 LSPSGPAPAG PAPAPDTNAP NHPSPAEYVE VLQELQRLES RLQPFLQRYY bmy_03151T0/1-1247 LSPSGPAPVG PTPAPDTNAP NHPSPAEYVE VLQELQRLES RLQPFLQRYY BACU015898/1-993 LSPSGPAPAG PTPAPDTNAP NHPSPAEYVE VLQELQRLES RLQPFVQRYY 401 450 ENSP00000365131/1-1132 EVLGAAATTD YNNNHEGREE DQRLINLVGE SLRLLGNTFV ALSDLRCNLA ENSBTAP00000035657/1-1128 EVLGAAATTD YNNNQEGREE DQRLINLVGE SLRLLGNTFV ALSDLRCNLA ENSTTRP00000013370/1-1163 EVLGAAATTD YNNNQEGREE DQRLINLVGE SLRLLGNTFV ALSDLRCNLA bmy_03151T0/1-1247 EVLGAAATTD YNNNQEGREE DQRLINLVGE SLRLLGNTFV ALSDLRCNLA BACU015898/1-993 EVLGAAATTD YNNNQEGREE DQRLINLVGE SLRLLGNTFV ALSDLRCNLA 451 500 ENSP00000365131/1-1132 CTPPRHLHVV RPMSHYTTPM VLQQAAIPIQ INVGTTVTMT GNGTRPPPTP ENSBTAP00000035657/1-1128 CAPPRHLHVV RPMSHYTTPM VLQQAAIPIQ INVGTTVTMT GNGTRPPPTP ENSTTRP00000013370/1-1163 CAPPRHLHVV RPMSHYTTPM VLQQAAIPIQ INVGTTVTMT GNGTRPPPTP bmy_03151T0/1-1247 CAPPRHLHVV RPMSHYTTPM VLQQAAIPIQ INVGTTVTMT GNGTRPPPTP BACU015898/1-993 CAPPRHLHVV RPMSHYTTPM VLQQAAIPIQ INVGTTVTMT GNGTRPPPTP 501 550 ENSP00000365131/1-1132 NAEAPPPGPG QASSVAPSST NVESSAEGAP PPGPAPPPAT SHPRVIRISH ENSBTAP00000035657/1-1128 SAEAPPAGAG QASSVAPSST AVESSNEGAS PPGPAPPPTT SHPRVIRISH ENSTTRP00000013370/1-1163 NAEAPPPGPG QASSLAPSST TVESLAEGAP SLGPAPPPTA SHPRVIRISH bmy_03151T0/1-1247 SAEAPPPGPG QASSLAPSST TVESSTEGAP PPGPAPPPTA SHPRVIRISH BACU015898/1-993 SAEASPPGPG QASSLAPSST TVESSTEGAP PPGPAPPPTA SHPRVIRISH 551 600 ENSP00000365131/1-1132 QSVEPVVMMH MNIQDSGTQP GGVPSAPTGP LGPPGHGQTL GQ-------- ENSBTAP00000035657/1-1128 QSVEPVVMMH MNIQDSGTQP GGVPSAPTGP LGPPGHGQTL GQ-------- ENSTTRP00000013370/1-1163 QSVEPVVMMH MNIQDSGTQP GGVPSAPTGP LGPPGHGQTL GSTHIQLPSL bmy_03151T0/1-1247 QSVEPVVMMH MNIQDSGTQP GGVPSAPTGP LGPPGHGQTL GSTHIQPPSL BACU015898/1-993 QSVEPVVMMH MNIQDSGTQP GGVPSAPTGP LGPPGHGQTL GSTHIQPPSL 601 650 ENSP00000365131/1-1132 ---------- ---------- --------QV PGFPTAPTRV VIARPTPPQA ENSBTAP00000035657/1-1128 ---------- ---------- --------QV PGFPTAPTRL VIARPTPPQA ENSTTRP00000013370/1-1163 PPEFMHAVAH QITHQAMVAA VASAAAG-QV PGFPTAPTRV VIARATPPQA bmy_03151T0/1-1247 PPEFMHAVAH QITHQAMVAA VASAAAGQQV PGFPTAPTRV VIARPTPPQA BACU015898/1-993 PPEFMHAVAH QITHQAMVAA VASAAAGQQV PGFPTAPTRV VIARPTPPQA 651 700 ENSP00000365131/1-1132 RPSHPGGPPV SGTLQGAGLG TNASLAQMVS GLVGQLLMQP VLVAQGTPGM ENSBTAP00000035657/1-1128 RPSHPGGPPV SGALPGAGLG TNASLAQMVS GLVGQLLMQP VLVAQGTPGM ENSTTRP00000013370/1-1163 RPSHPGGPPV SGALPGAGLG TNASLAQMVS GLVGQLLMQP VLVAQGTPGM bmy_03151T0/1-1247 RPSHPGGPPV SGALPGAGLS TNASLAQMVS GLVGQLLMQP VLVAQGTPGM BACU015898/1-993 RPSHPGGPPV SGALPGAGLG TNASLAQMVS GLVGQLLMQP VLVA------ 701 750 ENSP00000365131/1-1132 APPPAPATAS ASAGTTNTAT TAGPAPGGPA QPPPTPQPSM ADLQFSQLLG ENSBTAP00000035657/1-1128 APSPAPATAS ASSGTTNTAT TAGPAPGGPA QPPP-PQAST SDLQFSQLLG ENSTTRP00000013370/1-1163 APPPAPATAS ASAGTTNTAT TAGPAPGGPA QPPP-PQPSA SDLQFSQLLG bmy_03151T0/1-1247 APPPAPATAS ASAGTTNTAT TAGPAPGGPA QPPP-PQPSA SDLQFSQLLG BACU015898/1-993 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000365131/1-1132 NLLGPAGPGA GGSGVASPTI TVAMPGVPAF LQGMTDFLQA TQTA--PPPP ENSBTAP00000035657/1-1128 NLLGPAGPGT GGPGMASPTI TVAMPGVPAF LQGMTDFLQA TQTAAPPPPP ENSTTRP00000013370/1-1163 NLLGPAGPGA GGPGMASPTI TVAMPGVPAF LQGMTDFLQA TQTAAPPPPP bmy_03151T0/1-1247 NLLGPAGPGA GGPGMASPTI TVAMPGVPAF LQGMTDFLQA TQTAAPPPPP BACU015898/1-993 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000365131/1-1132 PPPPPPPPAP EQQTMPPPGS PSGGAGSPGG LGLESLSPEF FTSVVQGVLS ENSBTAP00000035657/1-1128 PPPPPPPPAP EQQTAPPPGS PSGGSGSPGS VGPESLPLEF FTSVVQGVLS ENSTTRP00000013370/1-1163 PPPPPPPPAP EQQTAPPPGS PSGGAGSPGG LGPESLPLEF FTSVVQGVLS bmy_03151T0/1-1247 PPPPPPPPAP AQQTAPPPGS PSGGAGSPGG LGPESLPLEF FTSVVQGVLS BACU015898/1-993 PPPPPPPPAP AQQTAAPPGS PSGGAGSPGG LGPESLPLEF FTSVVQGVLS 851 900 ENSP00000365131/1-1132 SLLGSLGARA GSSESIAAFI QRLSGSSNIF EPGADGALGF FGALLSLLCQ ENSBTAP00000035657/1-1128 SLLGSLGARA GSSESIAAFI QRLSGSSNIF EPGADGALGF FGALLSLLCQ ENSTTRP00000013370/1-1163 SLLGSLGARA GSSESIAAFI QRLSGSSNIF EPGADGALGF FGALLSLLCQ bmy_03151T0/1-1247 SLLGSLGARA GSSESIAAFI QRLSGSSNIF EPGADGALGF FGALLSLLCQ BACU015898/1-993 SLLGSLGARA GSSESIAAFI QRLSGSSNIF EPGADGALGF FGALLSLLCQ 901 950 ENSP00000365131/1-1132 NFSMVDVVML LHGHFQPLQR LQPQLRSFFH QHYLGGQEPT PSNIRMATHT ENSBTAP00000035657/1-1128 NFSMVDVVML LHGHFQPLQR LQPQLRSFFH QHYLGGQEPT PGNIRTATHA ENSTTRP00000013370/1-1163 NFSMVDVVML LHGHFQPLQR LQPQLRSFFH QHYLGGQEPT PGNIRTATHT bmy_03151T0/1-1247 NFSMVDVVML LHGHFQPLQR LQPQLRSFFH QHYLGGQEPT PGNIR----- BACU015898/1-993 NFSMVDVVML LHGHFQPLQR LQPQLRSFFH QHYLGGQEPT PGNIR----- 951 1000 ENSP00000365131/1-1132 LITGLEEYVR ESFSLVQVQP GVDIIRTNLE FLQEQFNSIA AHVLHCTDSG ENSBTAP00000035657/1-1128 LITGLEEYVR ESFSLVQVQP GVDIIRTNLE FLQEQFNSIA AHVMHCTDSG ENSTTRP00000013370/1-1163 LITGLEEYVR ESFSLVQVQP GVDIIRTNLE FLQEQFNSIA AHVMHCTDSG bmy_03151T0/1-1247 ---------- ---SLVQVQP GVDIIRTNLE FLQEQFNSIA AHVMHCTDSG BACU015898/1-993 ---------- ---SLVQVQP GVDIIRTNLE FLQEQFNSIA AHVMHCTDSG 1001 1050 ENSP00000365131/1-1132 FGARLLELCN QGLFECLALN LHCLGGQQME LAAVINGRIR RMSRGVNPSL ENSBTAP00000035657/1-1128 FGARLLELCN QGLFECLALN LHCLGGQQME LAAVINGRIR RMSRGVNPSL ENSTTRP00000013370/1-1163 FGARLLELCN QGLFECLALN LHCLGGQQME LAAVINGRIR RMSRGVNPSL bmy_03151T0/1-1247 FGARLLELCN QGLFECLALN LHCLGGQQME LAAVINGRIR RMSRGVNPSL BACU015898/1-993 FGARLLELCN QGLFECLALN LHCLGGQQME LAAVINGRIR RMSRGVNPSL 1051 1100 ENSP00000365131/1-1132 VSWLTTMMGL RLQVVLEHMP VGPDAILRYV RRVGDPPQPL PEEPMEVQGA ENSBTAP00000035657/1-1128 VSWLTTMMGL RLQVVLEHMP VGPDAILRYV RRVGDPPQTL PEEPMEVQGS ENSTTRP00000013370/1-1163 VSWLTTMMGL RLQVVLEHMP VGPDAILRYV RRVGDPPQTL PEEPMEIQGS bmy_03151T0/1-1247 VSWLTTMMGL RLQVVLEHMP VGPDAILRYV RRVGDPPQTL PEEPMEVQGS BACU015898/1-993 VSWLTTMMGL RLQVVLEHMP VGPDAILRYV RRVGDPPQTL PEEPMEVQGS 1101 1150 ENSP00000365131/1-1132 ERASPEPQRE NASPAPGTTA EEAMSRGPPP APEGGSRDEQ DGASAETEPW ENSBTAP00000035657/1-1128 ERTSPEPQRE NASPAPGTTA EEAMSRGPPP APEGGSRDEQ DGASTETEPW ENSTTRP00000013370/1-1163 ERTPPEPQRE NASPAPGTTA EEAMSRGPPP APEGGSRDEQ DGASAETEPW bmy_03151T0/1-1247 ERTPPEPQRE NASPAPGTTA EEAMSRGPPP APEGGSRDEQ DGASAETEPW BACU015898/1-993 ERTPPEPQ-- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000365131/1-1132 AAAVPPEWVP IIQQDIQSQR KVKPQPPLSD AYLSGMPAKR RKTMQGEGPQ ENSBTAP00000035657/1-1128 AAAVPPEWVP IIQQDIQSQR KVKPQPPLSD AYLSGMPAKR RKTMQGEGPQ ENSTTRP00000013370/1-1163 AAAVPPEWVP IIQQDIHSQR KVKPQPPLSD AYLSGMPAKR RKTMQGEGPQ bmy_03151T0/1-1247 AAAVPPEWVP IIQQDIHSQR KVKPQPPLSD AYLSGMPAKR RKTMQGEGPQ BACU015898/1-993 ------EWVP IIQQDIHSQR KVKPQPPLSD AYLSGMPAKR RKTMQGEGPQ 1201 1250 ENSP00000365131/1-1132 LLLSEAVSRA AKAAGARPLT SPESLSRDLE APEVQESYRQ QLRSDIQKRL ENSBTAP00000035657/1-1128 LLLSEAVSRA AKAAGARPLT SPESLSRDLE APEVQESYRQ QLRADIQKRL ENSTTRP00000013370/1-1163 LLLSEAVSRA AKAAGARPLT SPESLSRDLE APEVQESYRQ QLRADIQKRL bmy_03151T0/1-1247 LLLSEAVSRA AKAAGARPLT SPESLSRDLE APEVQESYRQ QLRADIQKRL BACU015898/1-993 LLLSEAVSRA AKAAGARPLT SPESLSRDLE APEVQESYRQ QLRADIQKRL 1251 1300 ENSP00000365131/1-1132 QEDPNYSPQR FPNAQRAFAD DP ENSBTAP00000035657/1-1128 QEDPNYSPQR FPNAHRAFAD DP ENSTTRP00000013370/1-1163 QEDPNYSPQR FPNAHRAFAE DP bmy_03151T0/1-1247 QEDPNYSPQR FPNAHRAFAD DP BACU015898/1-993 QEDPNYSPQR FPNAHRAFAD DP