KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:46:02 2014 Check: 00 .. Name: ENSP00000322649/1-370 Len: 392 Check: 4379 Weight: 1.00 Name: ENSBTAP00000035802/1-349 Len: 392 Check: 1902 Weight: 1.00 Name: ENSTTRP00000009862/1-328 Len: 392 Check: 6968 Weight: 1.00 Name: bmy_06916T0/1-334 Len: 392 Check: 7472 Weight: 1.00 // 1 50 ENSP00000322649/1-370 MGAQPGEPQN TCSRIQTLFR RVKTLLIKAP PPPQPPPPPP SWNPGCTHVY ENSBTAP00000035802/1-349 MGAQPEQTQK PSSRVQTLFK RVKAFFTKTG PP--PPPPAP SRNLGCTHVY ENSTTRP00000009862/1-328 ---------- ---------- -VKSLLTKTP ---------P SLNLGCTHVY bmy_06916T0/1-334 ---MPLPHGC WMGKLLTKDL NLSVLTLQLP WE-------P NLRKVRSLAR 51 100 ENSP00000322649/1-370 G--------- -YAFGHMHDN NLEHLPSQQV LDTGEQLMVP VEVLEVDNKE ENSBTAP00000035802/1-349 G--------- -YVFGHLGER EPEHSPSQQV LDTGEQLMVP VDVLEVDNEG ENSTTRP00000009862/1-328 G--------- -YVFGHVPES KLEHLPTQQV LDTGEQLMVP MAIVEIDNEG bmy_06916T0/1-334 GSRPCLRGSS PYSPKPTPLL EPGLYPCIWV LHTGEQLMVP MAVLEVDNEG 101 150 ENSP00000322649/1-370 ALWKFLLSGA MAGAVSRTGT APLDRAKVYM QVYSSKTNFT NLLG------ ENSBTAP00000035802/1-349 ALWKFLLSGA MAGAVSRTGT APLDRAKVYM QVYSSKKNFM NLLG------ ENSTTRP00000009862/1-328 ALWKFLLSGA MAGAVSHPGT APLDCAKVYM QVYSSKTNFM NLLG------ bmy_06916T0/1-334 ALWKFLLSGA MAGXVSHTGT APLDCAKVYM RVHGEHGVGA VGMGMGGSGA 151 200 ENSP00000322649/1-370 ------GLQS MVQEGGFRSL WRGNGINVLK IAPEYAIKFS VFEQCKNYFC ENSBTAP00000035802/1-349 ------GLRS LIQEGGIRSL WRGNGINVLK IAPEYAIKFS VFEQCKNYFC ENSTTRP00000009862/1-328 ------GIRS MVQEAGFSLL WRGNGINVLK IAPEYAIEFS VFEQXXXXXX bmy_06916T0/1-334 DGVQDGGIRS MVQEGGVCLL WRGNGINVLK IAPEYAIKFS VFEQ------ 201 250 ENSP00000322649/1-370 GIQGSPPFQE RLLAGSLAVA ISQTLINPME VLKTRLTLRR TGQYKGLLDC ENSBTAP00000035802/1-349 GVHESPPFQE RLLAGSLAVA TSQTLINPME VLKTRLTLRR TGQYKGLLDC ENSTTRP00000009862/1-328 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX VLKTWLTLCQ TGQYKGLLDY bmy_06916T0/1-334 ---------E QLLASSLAVA TSQTLINPME VLKTRLTLCR TGQYKGLLDC 251 300 ENSP00000322649/1-370 ARQILQREGT RALYRGYLPN MLGIIPYACT DLAVYEMLQC FWVKSGRDMG ENSBTAP00000035802/1-349 ARQILEQEGT RALYRGYLPN MLGIIPYACT DLAVYEMLNC LWLKSGRDMK ENSTTRP00000009862/1-328 ARHIAEQEGT RLLYCGYL-- MLGIIPYACT DLAVYEM-QC SLKSRDMELS bmy_06916T0/1-334 TRHIVEQEGT RVLYRGYLPN MLGIIPYACT DLAVYE---- ---------- 301 350 ENSP00000322649/1-370 DPSGLVSLSS VTLSTTCGQM ASYPLTLVRT RMQAQDTVEG SNPTMRGVLQ ENSBTAP00000035802/1-349 DPSGLVSLSS VTLSTTCGQM ASYPLTLVRT RMQAQGQL-- ------GPFS ENSTTRP00000009862/1-328 GVSSSVTLTC --------QM ASYPLTSVRN RMQ-QDTVEG SNLTMCGVFR bmy_06916T0/1-334 ---------- ---------R ASYPLTSVRT RMQAQDTVEG SNLTMRGVFR 351 400 ENSP00000322649/1-370 RILAQQGWLG LYRGMTPTLL KVLPAGGISY VVYEAMKKTL GI ENSBTAP00000035802/1-349 NLA------- -YHDPLP-LL SELSHDPPKH TQTDS--QTL HI ENSTTRP00000009862/1-328 QILAQQGCPG LYRGMTPTLL KVLPAGGISY VVYEAMKKTL GV bmy_06916T0/1-334 RILAQQRCPG LYRGMTSTLL KVLPAGGISY VVYEAMKKTL GV