KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:46:03 2014 Check: 00 .. Name: ENSP00000300215/1-721 Len: 1643 Check: 115 Weight: 1.00 Name: ENSBTAP00000035838/1-655 Len: 1643 Check: 1922 Weight: 1.00 Name: ENSTTRP00000015130/1-718 Len: 1643 Check: 889 Weight: 1.00 Name: bmy_10940T0/1-740 Len: 1643 Check: 4104 Weight: 1.00 Name: BACU004932/1-1640 Len: 1643 Check: 7204 Weight: 1.00 // 1 50 ENSP00000300215/1-721 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035838/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015130/1-718 ---------- ---------- ---------- ---------- ---------- bmy_10940T0/1-740 ---------- ---------- ---------- ---------- ---------- BACU004932/1-1640 MQTCALGQKC RENQPEPLEH SCDYKHLLSG TPLLVPLLPP SSTQTSVAAL 51 100 ENSP00000300215/1-721 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035838/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015130/1-718 ---------- ---------- ---------- ---------- ---------- bmy_10940T0/1-740 ---------- ---------- ---------- ---------- ---------- BACU004932/1-1640 ELRSVDLQNA RNNQEHHTQQ MGLQRLIVGH GESYTIQLHF NRPFHSGTDY 101 150 ENSP00000300215/1-721 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035838/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015130/1-718 ---------- ---------- ---------- ---------- ---------- bmy_10940T0/1-740 ---------- ---------- ---------- ---------- ---------- BACU004932/1-1640 ITLVAETGPE PTVLLGTRAT FLLTQARQGN VWSASDFTIH ANSLFVSLFT 151 200 ENSP00000300215/1-721 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035838/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015130/1-718 ---------- ---------- ---------- ---------- ---------- bmy_10940T0/1-740 ---------- ---------- ---------- ---------- ---------- BACU004932/1-1640 PADAVIGPYT LKMEISQGPG HSTSHPLGTF ILLFNPWSAE DDVYLPSEIV 201 250 ENSP00000300215/1-721 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035838/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015130/1-718 ---------- ---------- ---------- ---------- ---------- bmy_10940T0/1-740 ---------- ---------- ---------- ---------- ---------- BACU004932/1-1640 LQEYIMMDYG FVYSGHERVI TPWPWNYGQF EEDIIDIRFE ILNKSLYFLE 251 300 ENSP00000300215/1-721 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035838/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015130/1-718 ---------- ---------- ---------- ---------- ---------- bmy_10940T0/1-740 ---------- ---------- ---------- ---------- ---------- BACU004932/1-1640 NPSKDYSQWN NVVYVCRVVS TMINSNDDSV MRCLGVPTHV VSNFHSAHNV 301 350 ENSP00000300215/1-721 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035838/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015130/1-718 ---------- ---------- ---------- ---------- ---------- bmy_10940T0/1-740 ---------- ---------- ---------- ---------- ---------- BACU004932/1-1640 DANLTIDTYY DQHAEMLPTQ KRDKIWNFHV WNECWMIRKD LPPGYNGWQV 351 400 ENSP00000300215/1-721 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035838/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015130/1-718 ---------- ---------- ---------- ---------- ---------- bmy_10940T0/1-740 ---------- ---------- ---------- ---------- ---------I BACU004932/1-1640 LDPTPQQTSS GSFHCGPASV KAIREGKVHL PYDTPFVYAE VNSGEVVWLL 401 450 ENSP00000300215/1-721 -MGQGEPSQR ST-------- ---------- ---------- ---------- ENSBTAP00000035838/1-655 -MGQG----- ---------- ---------- ---------- ---------- ENSTTRP00000015130/1-718 -MGQGEPSLL ST-------- ---------- ---------- ---------- bmy_10940T0/1-740 QRGSSEQQFK TGISC----- ---------- ---------- ---------- BACU004932/1-1640 EDGQAQEILA HNISSIGKEI STKMVGSDQS QNITSSYKYP EGSAEERSVF 451 500 ENSP00000300215/1-721 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035838/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015130/1-718 ---------- ---------- ---------- ---------- ---------- bmy_10940T0/1-740 SQVDKSSLQP W--------- ---------- ---------- ---------- BACU004932/1-1640 MKVSRKMLGP WRASAPFLEL LGSGGFEDQL AQLQLYPTRK PEWGQDLLPK 501 550 ENSP00000300215/1-721 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035838/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015130/1-718 ---------- ---------- ---------- ---------- ---------- bmy_10940T0/1-740 -------DKK Q--------- ---------D GGG------- ---------- BACU004932/1-1640 LHARSMADRA QPQGPIRLLV HFCAQTLLLD GGTWEPLWRQ IVHLTLDFGE 551 600 ENSP00000300215/1-721 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035838/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015130/1-718 ---------- ---------- ---------- ---------- ---------- bmy_10940T0/1-740 ---------- ---------- ---------- ---------- ---------- BACU004932/1-1640 ETQWLLLLPY NNYRNKLMDE KLICVSGIAK VEETERSMLV LKDISLGPPH 601 650 ENSP00000300215/1-721 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035838/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015130/1-718 ---------- ---------- ---------- ---------- ---------- bmy_10940T0/1-740 ---------- ---------- ---------- ---------- ---------- BACU004932/1-1640 LSTEVSERAE VGKALRFHIS LTNTLLVALS HCTMVLQGSG LINGQITNDL 651 700 ENSP00000300215/1-721 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035838/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015130/1-718 ---------- ---------- ---------- ---------- ---------- bmy_10940T0/1-740 ---------- ---------- ---------- ---------- ---------- BACU004932/1-1640 GILVAGHTIQ IQLDLYPIKA GPQRLQVLIS SNEIKGYRFI FGQAFNITLY 701 750 ENSP00000300215/1-721 --------GL AGL------- ---------- ---------- ---------- ENSBTAP00000035838/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015130/1-718 --------GL TGL------- ---------- ---------- ---------- bmy_10940T0/1-740 --------GD DDV------- ---------- ---------- ---------- BACU004932/1-1640 FRNRAFQPGL DNIIFLAETG PLSDLAKGTQ AVFSLAGHRG PSPWIASLET 751 800 ENSP00000300215/1-721 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035838/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015130/1-718 ---------- ---------- ---------- ---------- ---------- bmy_10940T0/1-740 ---------- ---------- ---------- ---------- ---------- BACU004932/1-1640 TGATSLEVSL CTPPMVAVGQ YILKVHVESL QGPVMAYQLG EFILLFNPWC 801 850 ENSP00000300215/1-721 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035838/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015130/1-718 ---------- ---------- ---------- ---------- ---------- bmy_10940T0/1-740 ---------- ---------- ---------- ---------- ---------- BACU004932/1-1640 SGDAVYLDSE PQRQEYVVND YSFFEENIID ICLELLDKSL NFQIDPATDY 851 900 ENSP00000300215/1-721 ---------- -----YAAPA ASPVFIKGSG M--------- ---------- ENSBTAP00000035838/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015130/1-718 ---------- -----SVAPP SLHVFIKRSR M--------- ---------- bmy_10940T0/1-740 ---------- -----TVTDH PNMALLTGLW Y--------- --------IK BACU004932/1-1640 ALRGSPVHVS RVVCPTINSN DDRGVLSGDW SENYSDGISP VEWTGSVAIL 901 950 ENSP00000300215/1-721 ---------- ---------- ----DALGIK SCDFQAARNN EEHHTKALSS ENSBTAP00000035838/1-655 ---------- ---------- ------LGIK SCDFQAARNN AEHHTNDISS ENSTTRP00000015130/1-718 ---------- ---------- ----DGLGIK SCDFQAARNN VEHHTNDISS bmy_10940T0/1-740 AKWERR---- ---------- ---------- ----KAARNN AEHHTNDISS BACU004932/1-1640 KQWHATGCQP VCYGQCWVFA AVMCTGLGIK SCDFQAARNN AEHHTNDISS 951 1000 ENSP00000300215/1-721 RRLFVRRGQP FTIILYFRAP VRAFLPALKK VALTAQTGEQ PSKINRTQAT ENSBTAP00000035838/1-655 QRLFVRRGQP FTISLHFQAP VHTFLRALKK VALIAQTGKQ PSKANGTQAT ENSTTRP00000015130/1-718 QRLIVRRGQP FTISLNFWAP IRTFLHTLKK VVLIAQTGEQ PSKANQTQAT bmy_10940T0/1-740 QRLIVRRGQP FTISLNFWAP IRTFLQTLKK VVLIAQTGDQ PSKANRTQAT BACU004932/1-1640 QRLIVRRGQP FTISLNFWAP IRTFLQTLKK VVLIAQTGEQ PSKANRTQAT 1001 1050 ENSP00000300215/1-721 FPISSLGDRK WWSAVVEERD AQSWTISVTT PADAVIGHYS LLLQVSGRKQ ENSBTAP00000035838/1-655 FSVSSLGDRK WWSAMVEERD DQSWTISVTT PADAIIGHYS LLLQISGRKQ ENSTTRP00000015130/1-718 FSISSLGDRK WWSAMVEERD DQSWTISVTT PADAVIGHYS LLLQVSGRKQ bmy_10940T0/1-740 FSISSLGDRK WWSAMVEERD DQSWTISVTT PADAVIGHYS LLLQVSGRKQ BACU004932/1-1640 FSISSLGDRK WWSAMVEERD DQSWTISVTT PADAVIGHYS LLLQVSGRKQ 1051 1100 ENSP00000300215/1-721 LLLGQFTLLF NPWNR----- ---------- ---------- -----EDAVF ENSBTAP00000035838/1-655 -CLGQFTLLF NPWNR----- ---------- ---------- -----EDAVF ENSTTRP00000015130/1-718 -CLGQFTLLF NPWGR----- ---------- ---------- -----EDAVF bmy_10940T0/1-740 -CLGQFTLLF NPWGR----- ---------- ---------- -----EDAVF BACU004932/1-1640 -CLGQFTLLF NPWGRAQALC FCSKGFGRLN NGWELVSIEV PLPHVEDAVF 1101 1150 ENSP00000300215/1-721 LKNEAQRMEY LLNQNGLIYL GTADCIQAES WDFGQFEGDV IDLSLRLLSK ENSBTAP00000035838/1-655 LGNEAQRKEY LLNQNGLIFL GTADCIQAEP WDFGQLEEDV IDLGLSLLTV ENSTTRP00000015130/1-718 LANEAQRREY LLNQNGLIFL GTADCIQAEP WDFGQFEEDV IDLSLDLLSV bmy_10940T0/1-740 LANEAQRREY LLNQNGLIFL GTADCIQAEP WDFGQFEEDV VDLSLDLLSV BACU004932/1-1640 LANEAQRREY LLNQNGLIFL GTADCIQAEP WDFGQFEEDV IDLSLDLLNV 1151 1200 ENSP00000300215/1-721 DKQVEKWSQP VHVARVLGAL LHFLKEQRVL PTPQTQATQE GALLNKRRGS ENSBTAP00000035838/1-655 DNQVEKWGNP VHVARVLGAL LHILKEKSVL PTAKIQTTEE RALLNKRRGS ENSTTRP00000015130/1-718 DKRVEKWGNP VHVARVLGAL LHALKEKSVL PTPQIQTTEE KALLNKRRGS bmy_10940T0/1-740 DKRVEKWGNP VHVACVLGAL LHALKEKSVL PTPQIQTTEE RALLNKRRGS BACU004932/1-1640 DKRVEKWGNP VHVARVLGAL LHVLKEKSVL PTPQIQTTEE RALLNKRRGS 1201 1250 ENSP00000300215/1-721 VPILRQWLTG RGRPVYDGQA WVLAAVACTV LRCLGIPARV VTTFASAQGT ENSBTAP00000035838/1-655 APILRQWVTG HGRPVYEGQA WVLAAVACTV LRGLGIPARV VTTFTSAQGT ENSTTRP00000015130/1-718 APILRQWVKG QGRPVYDGQA WVLAAVACTV LRGLGIPARV VTTFTSAQGT bmy_10940T0/1-740 APILRQWIKG RGRPVYDGQA WVLAAVACTV LRGLGIPARV VTTFTSAQGT BACU004932/1-1640 APILRQWVKG RGRPVYDGQA WVLAAVACTV LRGLGIPARV VTTFTSAQGT 1251 1300 ENSP00000300215/1-721 GGRLLIDEYY NEEGLQNGEG QRGRIWIFQT STECWMTRPA LPQGYDGWQI ENSBTAP00000035838/1-655 GGDLLVNEYY NEEGLQNGED NRGRAWIFQT STECWMARPD LLEVYDGWQI ENSTTRP00000015130/1-718 GGGLLVDEYY SEEGLQNGEG HRGRIWIFQT STECWMARPA LPQGYDGWQI bmy_10940T0/1-740 GGGLLVDEYY NEEGLQNGEG HRGRIWIFQT STECWMARPA LPQGYDGWQI BACU004932/1-1640 GGGLLVDEYY NEEGLQNGEG HRGRIWIFQT STECWMARPA LPQGYDGWQI 1301 1350 ENSP00000300215/1-721 LHPSAPNGGG VLGSCDLVPV RAVKEGTLGL TPAVSDLFAA INASCVVWKC ENSBTAP00000035838/1-655 LYPSALKGGE VLEACDLVPV RAVKEGIVWL TPAASDIFAS INASCVVWKC ENSTTRP00000015130/1-718 LYPSAPNGGG VLEACDLVPV KAVKEGTLGL TPAVSDIFAS INASCVVWKC bmy_10940T0/1-740 LYPSAPNGGG VLEACDLVPV KAVKEGTLGL TPAVSDIFAS INASCVVWKC BACU004932/1-1640 LYPSAPNGGG VLEVCDLVPV KAVKEGTLGL TPAVSDIFAS INASCVVWKC 1351 1400 ENSP00000300215/1-721 CEDGTLELTD SNTKYVGNNI STKGVGSDRC EDITQNYKYP EGSLQEKEVL ENSBTAP00000035838/1-655 GEDGTLELTD SNTKYFGNNI STKNVDCDCH EDITQNYKYP EGIRQCKESA ENSTTRP00000015130/1-718 HEDGTLELTD SNTKYVGNNI STKGVDCDRC EDITQNYKYP EGSLQEKEVL bmy_10940T0/1-740 HEDGTLELTD SNTKYVGNSI STKGVDCDRR EDITQNYKYP EGSLQEKEVL BACU004932/1-1640 HEDGTLELTD SNTKYVGNSI STKGVDCDRR EDITQNYKYP EGSLQEKEVL 1401 1450 ENSP00000300215/1-721 ERVEKEKMER EKDNGIRPPS LETASPLYLL LKAPSSLPLR GDAQISVTLV ENSBTAP00000035838/1-655 HQCRRCQFY- ---PWVRKIP WSRKWQHTHF LAQKNPMGMR HLSGFSEA-- ENSTTRP00000015130/1-718 EKVQENRMKH GKDDGIHPPS LETDDPLHFF LEAPSSLALG GDARFSVNLL bmy_10940T0/1-740 EKVQENRMKH GKDDGIHPPS LETDDPLHFF LEAPSSLALG GDARFSVNLL BACU004932/1-1640 EKVQENRMKH GKDDGIHPPS LETDDPLHFF LEAPSSLALG GDARFSVNLL 1451 1500 ENSP00000300215/1-721 NHSEQEKAVQ LAIGVQAVHY NGVLAAKLWR KKLHLTLSAN LEKIITIGLF ENSBTAP00000035838/1-655 ---------- LTLGSH---- ---------- ---VLHLLRV SAKKISTSLF ENSTTRP00000015130/1-718 NPSDHDKEVQ LAVGLQAVYY NGVLAANLWT KKLVLTLRAN SAEKISTFLS bmy_10940T0/1-740 NPSDHEKEVQ LAVGLQAVYY NGVLAAKLWT KKLVLTLSAN SAEKISTFLS BACU004932/1-1640 NPSDHDKEVQ LAVGLQAVYY NGVLAAKLWT KKLVLTLSAN SAEKISTFLS 1501 1550 ENSP00000300215/1-721 FSNFERNPPE NTFLRLTAMA THSESNLSCF AQEDIAICRP HLAIKMPEKA ENSBTAP00000035838/1-655 NSNFEQSLPE NSFLRLTAMA TH--SSLPCF AQQDIAIRRP HLAIEMPETA ENSTTRP00000015130/1-718 FSNFKQNPPE NSFLRLTAMA TH--SSPTCF AQQDIAICRP HLAIEMPETA bmy_10940T0/1-740 FSNFKQNPPE NSFLRLTAMA TH--CSPTCF AQQDIAICRP HLAIEMPETA BACU004932/1-1640 FSNFKQNPPE NSFLRLTAMA TH--CSPTCF AQQDIAICRP HLAIEMPETA 1551 1600 ENSP00000300215/1-721 EQYQPLTASV SLQNSLDAPM EDCVISILGR GLIHRERSYR FRSVWPENTM ENSBTAP00000035838/1-655 EQHQTLIALV SIHNPLDVPL EDCVISIFGK GLIHREKSYR VNSVQPRNTL ENSTTRP00000015130/1-718 EQHQPLTASV SIHNSLDAPL KGCVISIFGR GLIHREKSYX XXXXXXXXXX bmy_10940T0/1-740 EQHQPLTASV SIHNSLDAPM KGCVISIFGR GLIHREKSYR LSSVQSGNTL BACU004932/1-1640 ERHQPLTASV SVHNSLDAPM KGCVISIFGR GLIHREKSYR LSSVQSRNTL 1601 1650 ENSP00000300215/1-721 CAKFQFTPTH VGLQRLTVEV DCNMFQNLTN YKSVTVVAPE LSA ENSBTAP00000035838/1-655 RTQLKFVPMK VGCQRLTVEM DCNMFQNLTN FRTVMVVAPK SPA ENSTTRP00000015130/1-718 XXXXXXXXXX XXXXXXXXEM DCNMFQNLTN LRSVTVVAPE TPA bmy_10940T0/1-740 RTQLEFTPMQ VGLQRLTVEM DCNMFQNLTN FRSVTVVAPE TPA BACU004932/1-1640 RTQLEFTPMR VGLQRLTVEM DCDMFQNLTN FRSVTVVAPG TPA