KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:46:07 2014 Check: 00 .. Name: ENSBTAP00000035931/1-310 Len: 311 Check: 1866 Weight: 1.00 Name: ENSP00000362068/1-310 Len: 311 Check: 1449 Weight: 1.00 Name: ENSTTRP00000008947/1-306 Len: 311 Check: 4576 Weight: 1.00 Name: bmy_00086T0/1-306 Len: 311 Check: 2895 Weight: 1.00 Name: BACU017989/1-242 Len: 311 Check: 7025 Weight: 1.00 // 1 50 ENSBTAP00000035931/1-310 MADAAATAGA AGSGTRSGSK QSTNPADNYH LARRRTLQVV VSSLLTEAGF ENSP00000362068/1-310 MADAAATAGA GGSGTRSGSK QSTNPADNYH LARRRTLQVV VSSLLTEAGF ENSTTRP00000008947/1-306 MADAAATAGA GSSGTRSGSK QSTNPADNYH LARRRTLQVV VSSLLTEAGF bmy_00086T0/1-306 MADAAATAGA GSSGTRSGSK QSTNPADNYH LARRRTLQVV VSSLLTEAGF BACU017989/1-242 MADAAATAGA GSSGTRSGSK QSTNPADNYH LARRRTLQVV VSSLLTEAGF 51 100 ENSBTAP00000035931/1-310 ESAEKASVET LTEMLQSYIS EIGRSAKSYC EHTARTQPTL SDIVVTLVEM ENSP00000362068/1-310 ESAEKASVET LTEMLQSYIS EIGRSAKSYC EHTARTQPTL SDIVVTLVEM ENSTTRP00000008947/1-306 ESAEKASVET LTEMLQSYIS EIGRSAKSYC EHTARTQPTL SDIVVTLVEM bmy_00086T0/1-306 ESAEKASVET LTEMLQSYIS EIGRSAKSYC EHTARTQPTL SDIVVTLVEM BACU017989/1-242 ESAEKASVET LTEMLQSYIS EIGRSAKSYC EHTARTQPTL SDIVVTLVEM 101 150 ENSBTAP00000035931/1-310 GFNVDTLPAY AKRSQRMVIT APPVTNQPVT PKALTAGQNR PHPPHIPSHF ENSP00000362068/1-310 GFNVDTLPAY AKRSQRMVIT APPVTNQPVT PKALTAGQNR PHPPHIPSHF ENSTTRP00000008947/1-306 GFNVDTLPAY AKRSQRMVIT APPVTNQPVT PKALTAGQNR PHPPHIPSHF bmy_00086T0/1-306 GFNVDTLPAY AKRSQRMVIT APPVTNQPVT PKALTAGQNR PHPPHIPSHF BACU017989/1-242 GFNVDTLPAY AKRSQRMVIT APPVTNQPVT PKALTAGQNR PHPPHIPSHF 151 200 ENSBTAP00000035931/1-310 PEFPDPHTYI KTPTYREPVS DYQVLREKAA SQRRDVERAL TRFMAKTGET ENSP00000362068/1-310 PEFPDPHTYI KTPTYREPVS DYQVLREKAA SQRRDVERAL TRFMAKTGET ENSTTRP00000008947/1-306 PEFPDPHTYI KTPTYREPVS DYQVLREKAA SQRRDVERAL TRFMAKTGET bmy_00086T0/1-306 PEFPDPHTYI KTPTYREPVS DYQVLREKAA SQRRDVERAL TRFMAKTGET BACU017989/1-242 PEFPDPHTYI KTPTYREPVS DYQVLREKAA SQRRDVERAL TRFMAKTGET 201 250 ENSBTAP00000035931/1-310 QSLFKDDVST FPLIAARPFT IPYLTALLPS ELEMQQMEET DSSEQDEQTD ENSP00000362068/1-310 QSLFKDDVST FPLIAARPFT IPYLTALLPS ELEMQQMEET DSSEQDEQTD ENSTTRP00000008947/1-306 QSLFKDDVST FPLIAARPFT IPYLTALLPS ELEMQQMEET DSSEQDEQTD bmy_00086T0/1-306 QSLFKDDVST FPLIAARPFT IPYLTALLPS ELEMQQMEET DSSEQDEQTD BACU017989/1-242 QSLFKDDVST FP-------- ---------- ---------- ---------- 251 300 ENSBTAP00000035931/1-310 TENLPLHISP DDSGAEKENT SVLQQNPSLS GSRNGEESII DNPYLRPVKK ENSP00000362068/1-310 TENLALHISM EDSGAEKENT SVLQQNPSLS GSRNGEENII DNPYLRPVKK ENSTTRP00000008947/1-306 TENLPLHINT DDSGAEKENT SVLQQNPSLS GSRNGEENII DNPYLRPVKK bmy_00086T0/1-306 TENLPLHINT VGPAF----- CPLQHAPRSS PCCSLPITLG IGQDLPQVSG BACU017989/1-242 CECLP----S VDPGLSSEII APSSLSLSVV GRNE------ ---------- 301 350 ENSBTAP00000035931/1-310 PKIRRKKSLS - ENSP00000362068/1-310 PKIRRKKSLS - ENSTTRP00000008947/1-306 PKIRRK---- - bmy_00086T0/1-306 PMLGTCMMGP R BACU017989/1-242 ---------- -