KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:46:09 2014 Check: 00 .. Name: bmy_15846T0/1-549 Len: 880 Check: 6051 Weight: 1.00 Name: ENSBTAP00000035968/1-849 Len: 880 Check: 526 Weight: 1.00 Name: BACU008501/1-139 Len: 880 Check: 6877 Weight: 1.00 Name: ENSTTRP00000002395/1-858 Len: 880 Check: 5941 Weight: 1.00 // 1 50 bmy_15846T0/1-549 ---------- -PRAPWGPEA SSRAQKHRWT VGRLLEPGQW EPVLLSPSRP ENSBTAP00000035968/1-849 ----MLQKQM PVWVSHYPPD SCQEDGDRPA ATCALESTQT S--------- BACU008501/1-139 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002395/1-858 MTIQTSEGQP GSGTDVFVLQ SLQGDEEGST AGRSVSELEQ TQVLETPHLP 51 100 bmy_15846T0/1-549 P----ATIAQ REELSPCHLL TVRVIRMKNV QQADMISQTD CFVSLWLPTT ENSBTAP00000035968/1-849 -----WAGLV REGLSPCHLL TVRVIRMKNV RQADVVSLTD CFVSLWLPTA BACU008501/1-139 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002395/1-858 PLLPMAPGGS QEELSPCHLL TVRVIRMKNV QQADVVSQTD CFVSLWLPTS 101 150 bmy_15846T0/1-549 SHKRLRTRTI ANCRNPEWNE TFKFQIQTQV KNVLELSVCD EDIVTPDDHF ENSBTAP00000035968/1-849 SEKRLRTRTI SNCRNPEWNE TFSFQIQSQV KNVLELSVCD EDTVTPDDHL BACU008501/1-139 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002395/1-858 SPKRLRTRTI SNCRNPEWNE SFKFQIQTRV KNVLELSVCD DDTLTPDDHF 151 200 bmy_15846T0/1-549 LTVLYDLTKL CFREKTHVKF PLNTEGMEEL EVEFLLEESL DK-------- ENSBTAP00000035968/1-849 LTVLYDLTKL CFRKKTHVKF PLNTEGMEEL EVEFLLEESP SPPESLITNG BACU008501/1-139 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002395/1-858 LTVLYDLTKL CFREKTHVKF PLNREGM-EL EVEFLLEESP SPPESLITNG 201 250 bmy_15846T0/1-549 ---------- ---------C PAWRFMQNPG DRRRIGKGLL VTVTESFEHT ENSBTAP00000035968/1-849 VLVVTVLPES PVALGPPVAA PLREQNCGKE NQAQLEKDLL VTVTESFEHT BACU008501/1-139 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002395/1-858 VLVSRQM--- ---------S CLEVHAESRR QKNRKVKGLP VTV-GVFEHT 251 300 bmy_15846T0/1-549 QHISRCLEPC RPNPACFHYP KYFQPQVHVE VPKSQWSSAL SCCGASKNGP ENSBTAP00000035968/1-849 QHISPCLESC CSNLACFQYP KYFQPEVHVE LPKSPWICEL CCC-ARQKGP BACU008501/1-139 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002395/1-858 QHISHCLEPC GPNPACFHYP KYFQPQVHVE VPKSQWSSVL CCCSACKNDP 301 350 bmy_15846T0/1-549 VCQPLDCLRD GQAVTLPV-- ---------- ---------- -----AELEF ENSBTAP00000035968/1-849 VCQSLHCLPD GQAVTLPLGD GESLGGR--- --EALDVRLG FSLCQAELEF BACU008501/1-139 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002395/1-858 VCLSLDCLPD GQAVTLPVNK NCELHMKSTP CSEALDVRLG FSLCQAELEF 351 400 bmy_15846T0/1-549 LQKRRVVVAE ALKEVLQLEE DLQADEVPLI AIMATGGGIR SMTAMYGHLL ENSBTAP00000035968/1-849 LQKRRVVAAQ ALKEVLQLEE DLRADEVPLI AIMATGGGTR SMTAMYGHLL BACU008501/1-139 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002395/1-858 LQKRRVVVAE ALKQVLQLEE DLQADEVPLI SIMATGGGTR SMTAMYGHLL 401 450 bmy_15846T0/1-549 GLQKLNILNC ASYITGLSGA TWTMATLYRD PDWSSKNLEL AILEARRHVV ENSBTAP00000035968/1-849 ALQKLNILNC ASYITGLSGA TWTMATLYRD PDWSSKNLER AILEARRHVV BACU008501/1-139 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002395/1-858 GLQKLNILNC ASYITGLSGA TWTMATLYRD PDWSSKNLEL AILEARRHVV 451 500 bmy_15846T0/1-549 KDKMPALFPN QLLRFQEELQ QRRQEGYKVT FTDFWGLLVE ACLGDERNEC ENSBTAP00000035968/1-849 KDKMPALFPD QLLKFEEELQ QRRQEGYKVT FTDFWGLLIE ACLGDERGSF BACU008501/1-139 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002395/1-858 KDKTPALFPD QLLKFREELQ QRRQEGYKVT FTDFWGLLVE ACLGDEXXXX 501 550 bmy_15846T0/1-549 KLSDQSAALC QGQNPLPIYL TINVKDDISN QDFREWFEFS PYEVGLPKYG ENSBTAP00000035968/1-849 SSEIQTGALT AFSGSLPLLI THHLEADICP SSCAEWFEFS PYEVGMQKYG BACU008501/1-139 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002395/1-858 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXWFEFS PYEVGLQKYG 551 600 bmy_15846T0/1-549 GFIPTELFGS EFFMGRLMRR IPESRICYML GLWSSIFSLN LLDAWNLSHT ENSBTAP00000035968/1-849 AFIPTELFGS EFFMGRLMKR IPESRMCYML GLWSSIFSLN LLDAWNLSHT BACU008501/1-139 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002395/1-858 AFIPTELFGS EFFMGRLMRR IPESRICYML GLWSSIFSLN LLDA-NLSHT 601 650 bmy_15846T0/1-549 SEEFFHRWTR ERVH------ ---------- ---------- ---------- ENSBTAP00000035968/1-849 SEEFFHKWTR DRVHDIEDEP LLPEIPKCDA NVLDTTVVTP ASWLSNTFRD BACU008501/1-139 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002395/1-858 SEEFFHRWT- ERVHDI-DEP LLPEIPKCDA NMLDTTVVMP GSWLSNTFRN 651 700 bmy_15846T0/1-549 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035968/1-849 ILTHRAFVSK FHNFLLGLQL HTDYLQNSQF SMWKDTVLDG FPNQLTGSVK BACU008501/1-139 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002395/1-858 ILTSRAFLSE FHNFLLGLQM HTDYYQNGQF STWKDSVLDG FPNKLTASVN 701 750 bmy_15846T0/1-549 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035968/1-849 HLCLLDTAFF VNSSYAPLLR PERKVDLIIH LNYCAGSQTK PMKQTCEYCA BACU008501/1-139 ---------- ---------- ---------- ---------- -MKQTCKYCT ENSTTRP00000002395/1-858 HLCLLDTAFV INSSYPPVLR PERKADLIIH LNYCAGSQTK PMKQTCKYCT 751 800 bmy_15846T0/1-549 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000035968/1-849 VQNIPFLKYE LQKEEDSLKE CYLLENSQEP DTPIVTFFPL ICDTFQNYKA BACU008501/1-139 EQNIPFPKYE VQEEDDKLKE CYLLENSQES DAPIVIFFPL INDTFQKYKA ENSTTRP00000002395/1-858 EQNIPFPKYE VQEEEDNLKE CYLMESSQEP DAPTVIFFPL ISDTFQKYKA 801 850 bmy_15846T0/1-549 ---------- -----DIGG- ---------- ---------- ---------- ENSBTAP00000035968/1-849 PGVERSPEEL EQGQVDIYGP KTPYATKELT YTEAAFDKLV KLSEYNILNN BACU008501/1-139 PGVERSPEEL EQGQIDICGP KTPYATKELT YTEAAFDKLV KLSEYNILNN ENSTTRP00000002395/1-858 PGVERSPEEL EQGQVDIYGP KSPYATKELT YTEAAFDKLV KLSEYNILNN 851 900 bmy_15846T0/1-549 ---------- ---------- ---------- ENSBTAP00000035968/1-849 KDKLLQALRL AVERKRQ-KS QCPP------ BACU008501/1-139 KDKLLQALRL AVEKKKRLKS QCPPKVPGHP ENSTTRP00000002395/1-858 KDKLLQALRL AVEKKKRLKS QCPPK-----