KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:46:09 2014 Check: 00 .. Name: ENSP00000466055/1-316 Len: 316 Check: 6764 Weight: 1.00 Name: ENSBTAP00000035972/1-311 Len: 316 Check: 4945 Weight: 1.00 Name: ENSTTRP00000015781/1-311 Len: 316 Check: 6833 Weight: 1.00 Name: bmy_13729T0/1-203 Len: 316 Check: 4143 Weight: 1.00 Name: BACU020467/1-301 Len: 316 Check: 4208 Weight: 1.00 // 1 50 ENSP00000466055/1-316 MASADELTFH EFEEATNLLA DTPDAATTSR SDQLTPQGHV AVAVGSGGSY ENSBTAP00000035972/1-311 MAAADELAFH EFEEATNLLA QTPNETTT-R SDQLSPKGHV AVAMDSGGSY ENSTTRP00000015781/1-311 MAAADELAFH EFEEATDLLA QTPNEATT-R GDQLVPQQHV AVAVDSGGSY bmy_13729T0/1-203 MAAADELAFH ---------- ---------- ---------- ---------- BACU020467/1-301 ---------- EFEEATNLLA QTPNEATT-R GDQLVPQRHV AVAMDSGGSY 51 100 ENSP00000466055/1-316 GAEDEVEEES DKAALLQEQQ QQQQPGFWTF SYYQSFFDVD TSQVLDRIKG ENSBTAP00000035972/1-311 GAEDEV-EES DKTVLLQE-- EKQQPGFWTF GYYQSFFDVD TSQVLDRIKG ENSTTRP00000015781/1-311 GAEDEV-EES DKTALLQE-- EKQQPGFWTF SYYQSFFDVD TSQXXXXXXX bmy_13729T0/1-203 ---------- ---------- ---------- ---------- ---------- BACU020467/1-301 GAEDEV-EES DKTALLQE-- EKQQPGFWTF GYYQSFFDVD TAQVLDRIKG 101 150 ENSP00000466055/1-316 SLLPRPGHNF VRHHLRNRPD LYGPFWICAT LAFVLAVTGN LTLVLAQRRD ENSBTAP00000035972/1-311 SLLPRPGHNF VRHHLRNRPD LYGPFWICAT LAFVLAITGN LTLVLAQRRD ENSTTRP00000015781/1-311 XXXXXXXXXX XXXXXXXRPD LYGPFWICAT LAFVLAVTGN LTLVLAQRRD bmy_13729T0/1-203 ---------- ---------- --GPFWICAT LAFVLAVTGN LTLVLAQRRD BACU020467/1-301 SLLPRPGHNF VRHHLRSRPD LYGPFWICAT LAFVLAVTGN LTLVLAQRRD 151 200 ENSP00000466055/1-316 PSIHYSPQFH KVTVAGISIY CYAWLVPLAL WGFLRWRKGV QERMGPYTFL ENSBTAP00000035972/1-311 PSIHYSPQFH KVTVASLTIY CYAWLVPLAL WGFLRWRKGV RERMGLYTFL ENSTTRP00000015781/1-311 PSIHYSPQFH KVTVAGTAIY CYAWLVPLAL WGFLQWRKGV RERMGPYTFL bmy_13729T0/1-203 PSIHYSPQFH KVTVAGTAIY CYAWLVPLAL WGFLQWRKGV RERMGPYTFL BACU020467/1-301 PSIHYSPQFH KVTVAGTAIY CYAWLVPLAL WGFLQWRKGV RERMGPYTFL 201 250 ENSP00000466055/1-316 ETVCIYGYSL FVFIPMVVLW LIPVPWLQWL FGALALGLSA AGLVFTLWPV ENSBTAP00000035972/1-311 ETVCVYGYSL FVFIPTVVLW LIPVPWLQWL FGALALALSA AGLVFTLWPV ENSTTRP00000015781/1-311 ETVCVYGYSL FVFIPTVVLW LIPVPWLQWL SGALALALSA AGLVFTLWPV bmy_13729T0/1-203 EMVCVYGYSL FVFIPTVVLW LIPVPWLQWL SGALALALSA AGLVFTLWPV BACU020467/1-301 ETVCVYGYSL FVFIPTVVLW LIPVPWLQWL SGALALALSA AGLVFTLWPV 251 300 ENSP00000466055/1-316 VREDTRLVAT VLLSVVVLLH ALLAMGCKLY FFQSLPPENV APPPQITSLP ENSBTAP00000035972/1-311 VREDTRWAAG VLLSVVVLLH ALLAMGCKFY FFQPLPPEPM ASPHQATSQP ENSTTRP00000015781/1-311 VREDTRWAAV LLLSVVVLLH ALLATGCKFY FFQPLPLEPA APPHQATSQP bmy_13729T0/1-203 VREDSRLAAV LLLSVVVLLH ALLATGCKFY FFQPLPPEPA AAPHQATSQP BACU020467/1-301 VREDSRLAAV LLLSVVVLLH ALLATGCKFY FFQPLPPEPA APPHQATSQP 301 350 ENSP00000466055/1-316 SNIALSPTLP QSLAPS ENSBTAP00000035972/1-311 PATMLPPTLP RSVAA- ENSTTRP00000015781/1-311 PTVLLSPPPP RSAAA- bmy_13729T0/1-203 PTVLLSLPPP RSAAA- BACU020467/1-301 PTVLLSPPPP RSAAA-