KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:46:09 2014 Check: 00 .. Name: bmy_13734T0/1-865 Len: 933 Check: 6198 Weight: 1.00 Name: ENSTTRP00000015775/1-871 Len: 933 Check: 4427 Weight: 1.00 Name: ENSP00000373905/1-870 Len: 933 Check: 1406 Weight: 1.00 Name: BACU002489/1-758 Len: 933 Check: 4457 Weight: 1.00 Name: ENSBTAP00000035986/1-813 Len: 933 Check: 8352 Weight: 1.00 // 1 50 bmy_13734T0/1-865 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015775/1-871 MGNRGMEELI PLVNKLQDAF SSIGQSCHLD LPQIAVVGGQ SAGKSSVLEN ENSP00000373905/1-870 MGNRGMEELI PLVNKLQDAF SSIGQSCHLD LPQIAVVGGQ SAGKSSVLEN BACU002489/1-758 ---------- ---------- ---------- ---------- MLRTSNLLWG ENSBTAP00000035986/1-813 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_13734T0/1-865 ---------- --------LI WSIFLPFSEY AEFLHCKSKK FTDFEEVRQE ENSTTRP00000015775/1-871 FVGRDFLPRG SGIVTRRPLI LQLIFSKTEY AEFLHCKSKK FTDFDEVRQE ENSP00000373905/1-870 FVGRDFLPRG SGIVTRRPLI LQLIFSKTEH AEFLHCKSKK FTDFDEVRQE BACU002489/1-758 SRYRDFLPRG SGIVTRRPLI LQLIFSKTEY AEFLHCKSKK FTDFEEVRQE ENSBTAP00000035986/1-813 ---RDFLPRG SGIVTRRPLI LQLIFSKTEY AEFLHCKSRK FTDFEEVRQE 101 150 bmy_13734T0/1-865 IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLIDLPGI TKVPVGDQPP ENSTTRP00000015775/1-871 IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLIDLPGI TKVPVGDQPP ENSP00000373905/1-870 IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLIDLPGI TKVPVGDQPP BACU002489/1-758 IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLIDLPGI TKVPVGDQPA ENSBTAP00000035986/1-813 IEAETDRVTG TNKGISPVPI NLRIYSPHVL NLTLIDLPGI TKVPVGDQPQ 151 200 bmy_13734T0/1-865 DIEYQIKDMI LQFISRESSL ILAVTPANMD LANSDALKLA KEVDPQGLRT ENSTTRP00000015775/1-871 DIEYQIKDMI LQFISRESSL ILAVTPANMD LANSDALKLA KEVDPQGLRT ENSP00000373905/1-870 DIEYQIKDMI LQFISRESSL ILAVTPANMD LANSDALKLA KEVDPQGLRT BACU002489/1-758 DIEYQIKDMI LQFISRESSL ILAVTPANMD LANSDALKLA KEVDPQGLRT ENSBTAP00000035986/1-813 DIEYQIKDMI LQFISRESSL ILAVTPANMD LANSDALKLA KEVDPQGLRT 201 250 bmy_13734T0/1-865 IGVITKLDLM DEGTDARDIL ENKLLPLRRG YIGVVNRSQK DIEGKKDIRA ENSTTRP00000015775/1-871 IGVITKLDLM DEGTDARDIL ENKLLPLRRG YIGVVNRSQK DIEGKKDIRA ENSP00000373905/1-870 IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIEGKKDIRA BACU002489/1-758 IGVITKLDLM DEGTDARDIL ENKLLPLRRG YIGVVNRSQK DIEGKKDIRA ENSBTAP00000035986/1-813 IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIEGKKDIRT 251 300 bmy_13734T0/1-865 ALAAERKFFL SHPAYRHMAD RMGTPHLQKT LNQQLTNHIR ESLPALRSKL ENSTTRP00000015775/1-871 ALAAERKFFL SHPAYRHMAD RMGTPHLQKT LNQQLTNHIR ESLPALRSKL ENSP00000373905/1-870 ALAAERKFFL SHPAYRHMAD RMGTPHLQKT LNQQLTNHIR ESLPALRSKL BACU002489/1-758 ALAAERKFFL SHPAYRHMAD RMGTPHLQKT LNQQLTNHIR ESLPALRSKL ENSBTAP00000035986/1-813 ALAAERKFFL SHPAYRHIAD RMGTPHLQKT LNQQLTNHIR ESLPALRSKL 301 350 bmy_13734T0/1-865 QSQLLSLEKE VEEYKNFRPD DPTRKTKALL QMVQQFGVDF EKRIEGSGDQ ENSTTRP00000015775/1-871 QSQLLSLEKE VEEYKNFRPD DPTRKTKALL QMVQQFGVDF EKRIEGSGDQ ENSP00000373905/1-870 QSQLLSLEKE VEEYKNFRPD DPTRKTKALL QMVQQFGVDF EKRIEGSGDQ BACU002489/1-758 QSQLLSLEKE VEEYKNFRPD DPTRKTKALL QMVQQFGVDF EKRIEGSGDQ ENSBTAP00000035986/1-813 QSQLLSLEKE VEEYKNFRPD DPTRKTKALL QMVQQFGVDF EKRIEGSGDQ 351 400 bmy_13734T0/1-865 VDTLELSGGA RINRIFHERF PFELVKMEFD EKDLRREISY AIKNIHGVRT ENSTTRP00000015775/1-871 VDTLELSGGA RINRIFHERF PFELVKMEFD EKDLRREISY AIKNIHGVRT ENSP00000373905/1-870 VDTLELSGGA RINRIFHERF PFELVKMEFD EKDLRREISY AIKNIHGVRT BACU002489/1-758 VDTLELSGGA RINRIFHERF PFELV----- ---------- ---------- ENSBTAP00000035986/1-813 VDTLELSGGA RINRIFHERF PFELVKMEFD EKDLRREISY AIKNIHGVRT 401 450 bmy_13734T0/1-865 GLFTPDLAFE AIVKKQVVKL KEPCLKCVDL VIQELINTVR QCTSKLSSYP ENSTTRP00000015775/1-871 GLFTPDLAFE AIVKKQVVKL KEPCLKCVDL VIQELINTVR QCTSKLSSYP ENSP00000373905/1-870 GLFTPDMAFE AIVKKQIVKL KEPSLKCVDL VVSELATVIK KCAEKLSSYP BACU002489/1-758 ---------- ---------- ---------- ---------- ----KLSSYP ENSBTAP00000035986/1-813 GLFTPDLAFE AIVKKQVVKL KEPCLKCVDL VIQELINTVR QCTSKLSSYP 451 500 bmy_13734T0/1-865 RLREETERIV TTYIREREGR TKDQILLLID IEQSYINTNH EDFIGFANCY ENSTTRP00000015775/1-871 RLREETERIV TTYIREREGR TKDQXXXXXX XXXXXXXXXX XXXXXXXX-- ENSP00000373905/1-870 RLREETERIV TTYIREREGR TKDQILLLID IEQSYINTNH EDFIGFAN-- BACU002489/1-758 RLREETERIV TTYIREREGR TKDQILLLID IEQSYINTNH EDFIGFAN-- ENSBTAP00000035986/1-813 RLREETERIV TTYIREREGR TKDQILLLID IEQSYINTNH EDFIGFAN-- 501 550 bmy_13734T0/1-865 YTEQLVTGAQ QRSTQLNKKR AIPNQGEILV IRRGWLTINN ISLMKGGSKE ENSTTRP00000015775/1-871 --------AQ QRSTQLNKKR AIPNQXXXXV IRRGWLTINN ISLMKGGSKE ENSP00000373905/1-870 --------AQ QRSTQLNKKR AIPNQGEILV IRRGWLTINN ISLMKGGSKE BACU002489/1-758 --------AQ QRSTQLNKKR AIPNQ----V IRRGWLTINN ISLMKGGSKE ENSBTAP00000035986/1-813 --------AQ QRSTQLNKKR AVPNQ----V IRRGWLTINN ISLMKGGSKE 551 600 bmy_13734T0/1-865 YWFVLTAESL SWYKDEEEKE KKYMLPLDNL KIRDVEKGFM SNKHVFAIFN ENSTTRP00000015775/1-871 YWFVLTAESL SWYKDEEEKE KKYMLPLDNL KIRDVEKGFM SNKHVFAIFN ENSP00000373905/1-870 YWFVLTAESL SWYKDEEEKE KKYMLPLDNL KIRDVEKGFM SNKHVFAIFN BACU002489/1-758 YWFVLTAESL SWYKDEEEKE KKYMLPLDNL KIRDVEKGFM SNKHVFAIFN ENSBTAP00000035986/1-813 YWFVLTAESL SWYKDEEEKE KKYMLPLDNL KIRDVEKGFM SNKHVFAIFN 601 650 bmy_13734T0/1-865 TEQRNVYKDL RQIELACDSQ EDVDSWKASF LRAGVYPEKD QAENEDGAQE ENSTTRP00000015775/1-871 TEQRNVYKDL RQIELACDSQ EDVDSWKASF LRAGVYPEKD QAENEDGAQE ENSP00000373905/1-870 TEQRNVYKDL RQIELACDSQ EDVDSWKASF LRAGVYPEKD QAENEDGAQE BACU002489/1-758 TEQRNVYKDL RQIELACDSQ EDVDSWKASF LRAGVYPEKD QAENEDGAQE ENSBTAP00000035986/1-813 TEQRNVYKDL RQIELACDSQ EDVDSWKASF LRAGVYPEKD QAENEDGAQE 651 700 bmy_13734T0/1-865 NTFSMDPQLE RQVETIRNLV DSYVAIINKS IRDLMPKTIM HLMINNTKAF ENSTTRP00000015775/1-871 NTFSMDPQLE RQVETIRNLV DSYVAIINKS IRDLMPKTIM HLMINNTKAF ENSP00000373905/1-870 NTFSMDPQLE RQVETIRNLV DSYVAIINKS IRDLMPKTIM HLMINNTKAF BACU002489/1-758 NTFSMDPQLE RQVETIRNLV DSYVAIINKS IRDLMPKTIM HLMINSTKAF ENSBTAP00000035986/1-813 NTFSMDPQLE RQVETIRNLV DSYVAIINKS IRDLMPKTIM HLMINNTKAF 701 750 bmy_13734T0/1-865 IHHELLAYLY SSADQSSLME ESADQAQRRD DMLRMYHALK EALSIIGDIS ENSTTRP00000015775/1-871 IHHELLAYLY SSADQSSLME ESADQAQRRD DMLRMYHALK EALSIIGDIS ENSP00000373905/1-870 IHHELLAYLY SSADQSSLME ESADQAQRRD DMLRMYHALK EALNIIGDIS BACU002489/1-758 IHHELLAYLY SSADQSSLME ESADQAQRRD DMLRMYHALK EALSIIGDIS ENSBTAP00000035986/1-813 IHHELLAYLY SSADQSSLME ESADQAQRRD DMLRMYHALK EALNIIGDIS 751 800 bmy_13734T0/1-865 TSTVSTPVPP PVDDTWLQST SSHSPTPQRR PVSSMHPPGR PPAVRGSTPG ENSTTRP00000015775/1-871 TSTVSTPVPP PVDDTWLQST SSHSPTPQRR PVSSMHPPGR PPAVRGPTPG ENSP00000373905/1-870 TSTVSTPVPP PVDDTWLQSA SSHSPTPQRR PVSSIHPPGR PPAVRGPTPG BACU002489/1-758 TSTVSTPVPP PVDDTWLQST SSHSPTPQRR PVSSMHPPGR PPAVRGPTPG ENSBTAP00000035986/1-813 TSTVSTPVPP PVDDTWIQNT SSHSPTPQRR PVSSVHPPGR PPAVRGPTPG 801 850 bmy_13734T0/1-865 PPLIPVPQKT PCCAQPAHHY PPSRAIPARL GCGRHVLGGP RAGPSVQELR ENSTTRP00000015775/1-871 PPLIPVPVGA AA----SFSA PP---IPSRP GPHPSVFA-- ---------- ENSP00000373905/1-870 PPLIPVPVGA AA----SFSA PP---IPSRP GP-QSVFA-- ---------- BACU002489/1-758 PPLIPVPVGA AA----SFSA PP---IPSRP GPHPSVFA-- ---------- ENSBTAP00000035986/1-813 PPLIPVPVG- PA----SFSA PP---IPSRP GPHPGVFA-- ---------- 851 900 bmy_13734T0/1-865 WSGPIHRHPW PSSPRAGPGS LQAAPDSSLT LAPVRGWPGP HPQLDTALNG ENSTTRP00000015775/1-871 -----NNDPF SAPPQ----- --------IP SRPARIPPGI PPGVPSR--- ENSP00000373905/1-870 -----NSDLF PAPPQ----- --------IP SRPVRIPPGI PPGVPSR--- BACU002489/1-758 -----NNDPF SAPPQ----- --------IP SRPARIPPGI PPGVPSR--- ENSBTAP00000035986/1-813 -----NNDPF SAPPQ----- --------IP SRPARIPPGI PPGVPSR--- 901 950 bmy_13734T0/1-865 GALEPQDEGS RGVALSGMGS QVAEEAAASR VPS ENSTTRP00000015775/1-871 ---RPPAAPS RPTIIRPAEP SLLD------ --- ENSP00000373905/1-870 ---RPPAAPS RPTIIRPAEP SLLD------ --- BACU002489/1-758 ---RPPAAPS RPTIIRPAEP SLLD------ --- ENSBTAP00000035986/1-813 ---RPPAAPS RPTIIRPAEP SLLD------ ---