KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:46:37 2014 Check: 00 .. Name: ENSTTRP00000005055/1-937 Len: 970 Check: 4420 Weight: 1.00 Name: bmy_05211T0/1-560 Len: 970 Check: 8109 Weight: 1.00 Name: ENSP00000288466/1-861 Len: 970 Check: 640 Weight: 1.00 Name: ENSBTAP00000036117/1-923 Len: 970 Check: 7833 Weight: 1.00 Name: BACU019006/1-923 Len: 970 Check: 7631 Weight: 1.00 // 1 50 ENSTTRP00000005055/1-937 ---------- -ADGASAAGR KSTASRERLK RNQKSTKVEG PEPVPAEASL bmy_05211T0/1-560 ---------- ---------- ---------- ---------- ---------- ENSP00000288466/1-861 MNQPGGAAAP QADGASAAGR KSTASRERLK RSQKSTKVEG PEPVPAEASL ENSBTAP00000036117/1-923 MNQPGGAAAP QADGASAAGR KSAASRERLK RSQKSNKLEG PEPVPAEASL BACU019006/1-923 ---------- ---------- -----RERLK RSQKSTKVEG PEPVPAEASL 51 100 ENSTTRP00000005055/1-937 SAEQGTMTEV KVKTELPDDY IQEVIWQGEA KEEKKGVSKD G-TGDVPAEI bmy_05211T0/1-560 ---------- ---------- ---------- ---------- ---------- ENSP00000288466/1-861 SAEQGTMTEV KVKTELPDDY IQEVIWQGEA KEEKKAVSKD G-TSDVPAEI ENSBTAP00000036117/1-923 STEQGTMTEV KVKTELPDDY IQEVIWQGEA KEEKKAVSKD GTTGDVPAEI BACU019006/1-923 SAEQGTMTEV KVKTELPDDY IQEVIWQGEA KEEKKGVSKD G-TGDVPAEI 101 150 ENSTTRP00000005055/1-937 CVVIGGVRNQ QTLDGRAPEG SPHGESVRTY SGPAFRYASG SYECGICGKK bmy_05211T0/1-560 ---------- ---------- ---------- ---------- ---------- ENSP00000288466/1-861 CVVIGGVRNQ QTL------- ---------- ---------G SYECGICGKK ENSBTAP00000036117/1-923 CVVIGGVRNQ QTL------- ---------- ---------G SYECGICGKK BACU019006/1-923 CVVIGGVRNQ QTLDGKAPEG RPHGESVRSP YSGALRYAPG SYECGICGKK 151 200 ENSTTRP00000005055/1-937 YKYYNCFQTH VRAHRDTEAT SWEGASQGNN FRYTCDICGK KYKYYSCFQE bmy_05211T0/1-560 ---------- ---------- ---------- ---------- ---------- ENSP00000288466/1-861 YKYYNCFQTH VRAHRDTEAT SGEGASQSNN FRYTCDICGK KYKYYSCFQE ENSBTAP00000036117/1-923 YKYYNCFQTH VRAHRDTEAT SGEGASQGNN FRYTCDICGK KYKYYSCFQE BACU019006/1-923 YKYYNCFQTH VRAHRDTEAT SGEGASQGNN FRYTCDICGK KYKYYSCFQE 201 250 ENSTTRP00000005055/1-937 HRDLHAVDVF SVEGAPENRA DPFDQGVVAT DEVKEEPPEP FQKIGP---- bmy_05211T0/1-560 ---------- -MSGNPEQR- ---------- ---------- ---------- ENSP00000288466/1-861 HRDLHAVDVF SVEGAPENRA DPFDQGVVAT DEVKEEPPEP FQKIGPMNNI ENSBTAP00000036117/1-923 HRDLHAVDVF SVEGAPENRA DPFDQGVVAT DEVKEEPPEP FQKIGP---- BACU019006/1-923 HRDLHAVDVF SVEGAPENRA DPFDQGVVAT DEVKEEPPEP FQKIGP---- 251 300 ENSTTRP00000005055/1-937 ---------- ------KTGN YTCEFCXXXX XXXXXXXXXX XXXXXISTAP bmy_05211T0/1-560 ---------- ---------- ---------- ---------- ---------- ENSP00000288466/1-861 TSDIFKKKEV RQCQKRETGN YTCEFCGKQY KYYTPYQEHV ALHAPI---- ENSBTAP00000036117/1-923 ---------- ------KTGN YTCEFCGKQY KYYTPYQEHV ALHAPISTAP BACU019006/1-923 ---------- ------KTGN YTCEFCGKQY KYYTPYQEHV ALHAPISTAP 301 350 ENSTTRP00000005055/1-937 GWEPPDDPDT GSECSHPEVS PSPRFVAAKT QTNQSGKKAP ASVVRCATLL bmy_05211T0/1-560 ---------- ---------- ---------- ---------- ---------- ENSP00000288466/1-861 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036117/1-923 GWEPPDDPDT GSECSHPEVS PSPRFVAAKT QTNQSGKKAP ASVVRCSTLL BACU019006/1-923 GWEPPDDPDT GSECSHPEVS PSPRFVAAKT QTNQSGKKAP ASVVRCATLL 351 400 ENSTTRP00000005055/1-937 HRTPPATQTP TFRTPNSGSP ASKATAAESA FSRRVEGKAQ NHFEETNSSS bmy_05211T0/1-560 ---------- ---------- ---------- ---------- ---------- ENSP00000288466/1-861 ---------- ---------- -------KSA FSRRVEGKAQ NHFEETNSSS ENSBTAP00000036117/1-923 HRTPPATQTQ TFRTPNSGSP ASKAT-AESA FSRRVEGKAQ NHFEETNSSS BACU019006/1-923 HRTPPATQTP TFRTPNSGSP ASKATAAESA FSRRVEGKAQ NHFEETNSSS 401 450 ENSTTRP00000005055/1-937 QNSS-EPYTC GACGIQFQFY NNLLEHMQSH AADNENNIAS NQSRSPPAVV bmy_05211T0/1-560 ---------- --------LL THSYPQVVNS TSDNENNIAS NQSRSPPAVV ENSP00000288466/1-861 QNSS-EPYTC GACGIQFQFY NNLLEHMQSH AADNENNIAS NQSRSPPAVV ENSBTAP00000036117/1-923 QNSSAEPYTC GACGIQFQFY NNLLEHMQSH AADNENNIAS NQSRSPPAVV BACU019006/1-923 QNSS-EPYTC GACGIQFQFY NNLLEHMQSH AADNENNIAS NQSRSPPAVV 451 500 ENSTTRP00000005055/1-937 EEKWKPQAQR NSANNTTTSG LTPNSMIPEK ERQNIAERLL RVMCADLGAL bmy_05211T0/1-560 EEKWKPQAQR NSANNTTTSG LTPNSMIPEK ERQNIAERLL RVMCADLGAL ENSP00000288466/1-861 EEKWKPQAQR NSANNTTTSG LTPNSMIPEK ERQNIAERLL RVMCADLGAL ENSBTAP00000036117/1-923 EEKWKAQAQR NSANNTTTSG LTPNSMIPEK ERQNIAERLL RVMCADLGAL BACU019006/1-923 EEKWKPQAQR NSANNTTTSG LTPNSMIPEK ERQNIAERLL RVMCADLGAL 501 550 ENSTTRP00000005055/1-937 SVVSGKEFLK LAQTLVDSGA RYGAFSVTEI LGNFNTLALK HLPRMYNQVK bmy_05211T0/1-560 SVVSGKEFLK LAQTLVDSGA RYGAFSVTEI LGNFNTLALK HLPRMYNQVK ENSP00000288466/1-861 SVVSGKEFLK LAQTLVDSGA RYGAFSVTEI LGNFNTLALK HLPRMYNQVK ENSBTAP00000036117/1-923 SVVSGKEFLK LAQTLVDSGA RYGAFSVTEI LGNFNTLALK HLPRMYNQVK BACU019006/1-923 SVVSGKEFLK LAQTLVDSGA RYGAFSVTEI LGNFNTLALK HLPRMYNQVK 551 600 ENSTTRP00000005055/1-937 VKVTCALGSN ACLGIGVTCH SQSVGPDSCY ILTAYQAEGN HIKSYVLGVK bmy_05211T0/1-560 VKVTCALGSN ACLGIGVTCH SQSVGPDSCY ILTAYQAEGN HIKSYVLGVK ENSP00000288466/1-861 VKVTCALGSN ACLGIGVTCH SQSVGPDSCY ILTAYQAEGN HIKSYVLGVK ENSBTAP00000036117/1-923 VKVTCALGSN ACLGIGVTCH SQSVGPDSCY ILTAYQAEGN HIKSYVLGVK BACU019006/1-923 VKVTCALGSN ACLGIGVTCH SQSVGPDSCY ILTAYQAEGN HIKSYVLGVK 601 650 ENSTTRP00000005055/1-937 GADIRDSGDL VHHWVQNVLS EFVMSEIRTV YVTDCRVSAS AFSKAGMCLR bmy_05211T0/1-560 GADIRDSGDL VHHWVQNVLS EFVMSEIRTV YVTDCRVSAS AFSKAGMCLR ENSP00000288466/1-861 GADIRDSGDL VHHWVQNVLS EFVMSEIRTV YVTDCRVSTS AFSKAGMCLR ENSBTAP00000036117/1-923 GADIRDSGDL VHHWVQNVLS EFVMSEIRTV YVTDCRVSAS AFSKAGMCLR BACU019006/1-923 GADIRDSGDL VHHWVQNVLS EFVMSEIRTV YVTDCRVSAS AFSKAGMCLR 651 700 ENSTTRP00000005055/1-937 CSACALNSVV QSVLSKRTLQ ARSMHEVIEL LNVCEDLAGS TGLAKETFGS bmy_05211T0/1-560 CSACALNSVV QSVLSKRTLQ ARSMHEVIEL LNVCEDLAGS TGLAKETFGS ENSP00000288466/1-861 CSACALNSVV QSVLSKRTLQ ARSMHEVIEL LNVCEDLAGS TGLAKETFGS ENSBTAP00000036117/1-923 CSACALNSVV QSVLSKRTLQ ARSMHEVIEL LNVCEDLAGS TGLAKETFGS BACU019006/1-923 CSACALNSVV QSVLSKRTLQ ARSMHEVIEL LNVCEDLAGS TGLAKETFGS 701 750 ENSTTRP00000005055/1-937 LEETSPPPCW NSVTDSLLLV HERYEQICEF YSRAKKMNLI QSLNKHLLSN bmy_05211T0/1-560 LEETSPPPCW NSVTDSLLLV HERYEQICEF YSRAKKMNLI QSLNKHLLSN ENSP00000288466/1-861 LEETSPPPCW NSVTDSLLLV HERYEQICEF YSRAKKMNLI QSLNKHLLSN ENSBTAP00000036117/1-923 LEETSPPPCW NSVTDSLLLV HERYEQICEF YSRAKKMNLI QSLNKHLLSN BACU019006/1-923 LEETSPPPCW NSVTDSLLLV HERYEQICEF YSRAKKMNLI QSLNKHLLSN 751 800 ENSTTRP00000005055/1-937 LAAILTPVKQ AVIELSNESQ PTLQLVLPTY VRLEKLFTAK ANDAGTVSKL bmy_05211T0/1-560 LAAILTPVKQ AVIELSHESQ PTLQLVLPTY VRLEKLFTAK ANDAGTVSKL ENSP00000288466/1-861 LAAILTPVKQ AVIELSNESQ PTLQLVLPTY VRLEKLFTAK ANDAGTVSKL ENSBTAP00000036117/1-923 LAAILTPVKQ AVIELSNESQ PTLQLVLPTY VRLEKLFTAK ANDAGTVSKL BACU019006/1-923 LAAILTPVKQ AVIELSNESQ PTLQLVLPTY VRLEKLFTAK ANDAGTVSKL 801 850 ENSTTRP00000005055/1-937 CHLFLEALKE NFKVHPAHKV AMILDPQQKL RPVPPYQHEE IIGKVCELIN bmy_05211T0/1-560 CHLFLEALKE NFKVHPAHKV AMILDPQQKL RPVPPYQHEE IIGKVCELIN ENSP00000288466/1-861 CHLFLEALKE NFKVHPAHKV AMILDPQQKL RPVPPYQHEE IIGKVCELIN ENSBTAP00000036117/1-923 CHLFLEALKE NFKVHPAHKV AMILDPQQKL RPVPPYQHEE IIGKVCELIN BACU019006/1-923 CHLFLEALKE NFKVHPAHKV AMILDPQQKL RPVPPYQHEE IIGKVCELIN 851 900 ENSTTRP00000005055/1-937 EVKESWTEEA DFEPAAKKPR SAPGDNPAAQ EDDRLGKKEV YDYLQEPLFQ bmy_05211T0/1-560 EVKESWTEEA DFEPAAKKPR SAPGENPAAQ EDDRLGKNEV YDYLQEPLFQ ENSP00000288466/1-861 EVKESWAEEA DFEPAAKKPR SAAVENPAAQ EDDRLGKNEV YDYLQEPLFQ ENSBTAP00000036117/1-923 EVKESWTEEA DFEPAAKKPR SAPGENPATQ EDDRLGKNEV YDYLQEPLFQ BACU019006/1-923 EVKESWTEEA DFEPAAKKPR SAPGENPAAQ EDNRLGKNEV YDYLQEPLFQ 901 950 ENSTTRP00000005055/1-937 ATPDLFQYWS CVTQKHTKLA KLAFWLLAVP AVGARSGCVN MCEQALLIRR bmy_05211T0/1-560 ATPDLFQYWS CVTQKHTKLA KLAFWLLAVP AVGARSGCVN MCEQALLIKR ENSP00000288466/1-861 ATPDLFQYWS CVTQKHTKLA KLAFWLLAVP AVGARSGCVN MCEQALLIKR ENSBTAP00000036117/1-923 ATPDLFQYWS CVTQKHTKLA RLAFWLLAVP AVGARSGCVN MCEQALLIKR BACU019006/1-923 ATPDLFQYWS CVTQKHTKLA KLAFWLLAVP AVGARSGCVN MCEQALLIKR 951 1000 ENSTTRP00000005055/1-937 RRLLSPEDMN KLMFLKSNML bmy_05211T0/1-560 RRLLSPEDMN KLMFLKSNML ENSP00000288466/1-861 RRLLSPEDMN KLMFLKSNML ENSBTAP00000036117/1-923 RRLLSPEDMN KLMFLKSNML BACU019006/1-923 RRLLSPEDMN KLMFLKSNML