KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:46:39 2014 Check: 00 .. Name: ENSTTRP00000013880/1-463 Len: 484 Check: 5516 Weight: 1.00 Name: ENSP00000167586/1-472 Len: 484 Check: 7910 Weight: 1.00 Name: ENSBTAP00000036252/1-477 Len: 484 Check: 6173 Weight: 1.00 Name: bmy_16712T0/1-349 Len: 484 Check: 6862 Weight: 1.00 Name: BACU007060/1-470 Len: 484 Check: 161 Weight: 1.00 // 1 50 ENSTTRP00000013880/1-463 --MTSRQGTS SSSMKGSYVI SG----GSSC GSSARAGGSF RAPSAY-GGV ENSP00000167586/1-472 MTTCSRQFTS SSSMKGSCGI GGGIGGGSSR ISSVLAGGSC RAPSTYGGGL ENSBTAP00000036252/1-477 MTTCSRQYTS SSSIKSSGGI GG----GSSR ISSVLAGGSC RAPSAY-GGL bmy_16712T0/1-349 --MTSRQFTS SSSMKGSSGF GG----GSCR GSYPQAGGSC LGPSTY-GGL BACU007060/1-470 --MTSRQFTS SSSMKGTSGF GG----GCSR GPSTLVGGSC RAPSAY-GGQ 51 100 ENSTTRP00000013880/1-463 ---SSRYSSG GVCGVGGGYG GNYSSSSSFG GAMGSGFGGG YGGGFGGGSG ENSP00000167586/1-472 SVSSSRFSSG GACGLGGGYG GGFSSSSS-- -SFGSGFGGG YGGGLGAGLG ENSBTAP00000036252/1-477 SVSSSRYSSG GVCGLGGGYG GGFSSSSSFG GALGSSFGGG YGGGLGAGFG bmy_16712T0/1-349 --SSSRYNAG CVYGLGGGYG GGYSSSSSYG GALGSGFSGG YGGGHGASSS BACU007060/1-470 --SSSRYNAG CAYGLGGGYG GGYSSSSSFG GALGSGFSGG YGSGVGAGYS 101 150 ENSTTRP00000013880/1-463 GGV----CGG FGG----GDG LLVASEK-TM QNLNDRLASY LDDVRALEEA ENSP00000167586/1-472 GGF----GGG FAG----GDG LLVGSEKVTM QNLNDRLASY LDKVRALEEA ENSBTAP00000036252/1-477 GGFGGGVGGG FGGGFGVGDG LLAGSEKVTM QNLNDRLASY LDKVRALEEA bmy_16712T0/1-349 GGF----GGG LGGGFSCGDG LLVGSEKVTM QNLNDRLASY LDKVRALEEA BACU007060/1-470 GGF----GGG SGGGFSYGDG LLVGSEKVTM QNLNDRLASY LDKVRALEEA 151 200 ENSTTRP00000013880/1-463 NTDLEVKIRD WYQKQ-PTEI MDYSAYFRTI EDVR-KILAA TVDNANIVLQ ENSP00000167586/1-472 NADLEVKIRD WYQRQRPAEI KDYSPYFKTI EDLRNKILTA TVDNANVLLQ ENSBTAP00000036252/1-477 NADLEVKIRD WYQRQRPAEI KDYSPYFKTI EDLRNKILTA TVDNANVVLQ bmy_16712T0/1-349 NTDLEVKIRD WYQRQRPTEV RDYSIYFKTI EDLRNKILAA TVDNASVVLQ BACU007060/1-470 NTDLEVKIRD WYQKQRPTEV RDYSLYFKTI EDLRNKILAA TVDNASVVLQ 201 250 ENSTTRP00000013880/1-463 IDNARLAADD FRTKYETELN LRLSVEADIN GLRRVLDELT LARADLEMQI ENSP00000167586/1-472 IDNARLAADD FRTKYETELN LRMSVEADIN GLRRVLDELT LARADLEMQI ENSBTAP00000036252/1-477 IDNARLAADD FRTKYETELN LRLSVEADIN GLRRVLDELT LARADLEMQI bmy_16712T0/1-349 IDNARLAADD FRTKYETELN LRLSVEADIN GLRRVLDELT LARADLEMQI BACU007060/1-470 IDNARLAADD FRTKYETELN LRLSVEADIN GLRRVLDELT LARADLEMQI 251 300 ENSTTRP00000013880/1-463 ESLKEELAYL RKNHEEXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXDEMR ENSP00000167586/1-472 ESLKEELAYL KKNHEE-EMN ALRGQVGGDV NVEMDAAPGV DLSRILNEMR ENSBTAP00000036252/1-477 ESLKEELAYL RKNHEE-EMN SLRGQVGGDV NVEMDAAPGV DLSRILNEMR bmy_16712T0/1-349 ESLKEELAYL RKNHEE-EMI ALQGQVGGDV NVEMDAAPGV DLSRILNEMR BACU007060/1-470 ESLKEELAYL RKNHEE-EMN ALRGQVGGDV NVEMDAAPGV DLSRILNEMR 301 350 ENSTTRP00000013880/1-463 EQYEKMAEKN RKDAEDWFFS KTEELNREVA SSSEMVQSSK SEISELRRTM ENSP00000167586/1-472 DQYEKMAEKN RKDAEEWFFT KTEELNREVA TNSELVQSGK SEISELRRTM ENSBTAP00000036252/1-477 DQYEKMAEKN RKDAEDWFFS KTEELNREVA TNSELVQSGK SEISELRRTL bmy_16712T0/1-349 DQYEKMAEKN RKDAEDWFFS KTEELNHEVA ANSELVQSSK TEISELRRTL BACU007060/1-470 DQYEKMAEKN RKDAEDWFFS KTEELNHEVA ANSELVQSSK TEISELRRTL 351 400 ENSTTRP00000013880/1-463 QNLEIELQSH LSMKSSLENS LEETKNRYCL QLSQIQGLIC NVEEQLAQLR ENSP00000167586/1-472 QNLEIELQSQ LSMKASLENS LEETKGRYCM QLAQIQEMIG SVEEQLAQLR ENSBTAP00000036252/1-477 QNLEIELQSQ LSMKASLENS LEETKGRYCM QLAQIQELIS SVEEQLAQLR bmy_16712T0/1-349 QNLEIELQSH FSM------- ---------- ---------- ---------- BACU007060/1-470 QNLEIELQSQ LSMKSSLENS LEETKSRYCM QLGQIQELIS NMEEQLAQLR 401 450 ENSTTRP00000013880/1-463 CEMEQQSQEY KILLDVKTRL EQEIATYRRL LEGEDARFPT SQFSSGSQSS ENSP00000167586/1-472 CEMEQQNQEY KILLDVKTRL EQEIATYRRL LEGEDAHLSS SQFSSGSQSS ENSBTAP00000036252/1-477 CEMEQQNQEY KILLDVKTRL EQEIATYRRL LEGEDAHLSS SQFSSGSQSS bmy_16712T0/1-349 ---------- ---------- ---------- ---------- ---------- BACU007060/1-470 CEMEQQNQEY KILLDVKTRL EQEISTYRRL LEGEDTHLST SQFSTGSQSS 451 500 ENSTTRP00000013880/1-463 RDVTSSSRQI RTKVLDVQDG KLVSSHEQIV RTKN ENSP00000167586/1-472 RDVTSSSRQI RTKVMDVHDG KVVSTHEQVL RTKN ENSBTAP00000036252/1-477 RDV-SSSRQV RTKVVDVHDG KVVSTHEQIV RTKN bmy_16712T0/1-349 ---------- ---------- ---------- ---- BACU007060/1-470 RDVTSSSRQI RTKVLDVHDG KVVSSHEQVI RTKN