KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:46:40 2014 Check: 00 .. Name: bmy_12953T0/1-492 Len: 506 Check: 7277 Weight: 1.00 Name: ENSBTAP00000036271/1-441 Len: 506 Check: 8408 Weight: 1.00 Name: ENSP00000259407/1-418 Len: 506 Check: 1275 Weight: 1.00 Name: BACU017587/1-190 Len: 506 Check: 5199 Weight: 1.00 Name: ENSTTRP00000013593/1-419 Len: 506 Check: 8045 Weight: 1.00 // 1 50 bmy_12953T0/1-492 MVSMETTSTL NSRLGYFERS KLASNRQVSI ASSRLSKPSR SRLLPAAEFR ENSBTAP00000036271/1-441 SLQL------ ---------- ---------- ---RVFSPT- ---------- ENSP00000259407/1-418 ---------- ---------- ---------- ---------- ---------- BACU017587/1-190 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013593/1-419 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_12953T0/1-492 SPTQSFLSHC RAGNTTWSLC RLPMFQLTAT PASALADEPX HIRXTGLPPL ENSBTAP00000036271/1-441 ---------- -AGNTIWSLC LLPMFQLTVT PASALADEPV HIQATGLPPL ENSP00000259407/1-418 ---------- ---------- ---MIQLTAT PVSALVDEPV HIRATGLIPF BACU017587/1-190 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013593/1-419 ---------- ---------- --TRIQLTAT PASALVDEPA H--AKDLTPF 101 150 bmy_12953T0/1-492 QTVTLMASVK DEKGNLYQSR AFYRASKAGE LDLKQAPALG GHYVGVHPMG ENSBTAP00000036271/1-441 QMVTLIATMK DDKGNLYRSR AFYRANEAGE LDLKRDPAVG GHYMGVHPMG ENSP00000259407/1-418 QMVSFQASLE DENGDMFYSQ AHYRANEFGE VDLNHASSLG GDYMGVHPMG BACU017587/1-190 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013593/1-419 QIVLLWTSLE DEKGILFHSQ AYSRASEVGE VDLEHASSLG GDYVGVHPMG 151 200 bmy_12953T0/1-492 LFWSLKPEKA FERLIKKDVM NSPFWITLDL YDS-VYLQKS GEVQPRASQV ENSBTAP00000036271/1-441 LLWSLKPERP FDRLIKRNVM NTPTWITLDL YDS-VYIHKV GEAQPKASQV ENSP00000259407/1-418 LFWSLKPEKL LTRLLKRDVM NRPFQVQVKL YDLELIVNNK VASAPKASLT BACU017587/1-190 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013593/1-419 LLWSLKSEKI LTKLLKRDVM NNPLQFQLKL YDSDVMVTHT AITTPKVSLT 201 250 bmy_12953T0/1-492 VQRWFSSPGV QRVQIREGRV RGALFLPPGE GPFPGLIDLF GGIGGLVEYR ENSBTAP00000036271/1-441 LQRWFSSPDL QRVPIREGRI RGALFLPPGE GPFPGLLDLF GGIGGLVEYR ENSP00000259407/1-418 LERWYVAPGV TRIKVREGRL RGALFLPPGE GLFPGVIDLF GGLGGLLEFR BACU017587/1-190 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013593/1-419 LERWYVAPGV TRIQVKESRL RGALLLPPGE GRFPVVIDLF GGIGGLIEIR 251 300 bmy_12953T0/1-492 ASLLAAHGFA VLALAYFAYA DLPKQLQEVD LEYFEEAANL LLAHPKIQKP ENSBTAP00000036271/1-441 ASLLAVRGFA VLALAYFAYD DLPKQLEEVD LEYFEEAANL LLAHPKVQKP ENSP00000259407/1-418 ASLLASRGFA SLALAYHNYE DLPRKPEVTD LEYFEEAANF LLRHPKVFGS BACU017587/1-190 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013593/1-419 ASLLASHGFA VLALAYCDYE DLPFPLEKGD LEYFEEDANF LLRHPKVLSL 301 350 bmy_12953T0/1-492 GIGVISVSKG AEIGLAMACY LKEVAATVCI NGCNAIFEFP LRYRDLVITP ENSBTAP00000036271/1-441 GIGVISVSKG AEIGLAMACY LKQVAATVCI NGANAIHEFP LRYRDLVITP ENSP00000259407/1-418 GVGVVSVCQG VQIGLSMAIY LKQVTATVLI NGTNFPFGIP QVYHGQIHQP BACU017587/1-190 ---------- ------MAIH LKQVTAAALI NGPNFILDIP QVYRGQINQP ENSTTRP00000013593/1-419 GIGVVSMSKT AETGLSMAIH -KQVTAAALI NGPNFILDIP QVYRGHINQL 351 400 bmy_12953T0/1-492 IPSLPERMEF NIMGALCLRH YKGNPRDELN QHSVLPIEKA QGPILFIIGE ENSBTAP00000036271/1-441 IPSFPERMQV NAAGAVRIRH FKGDPRDERN QHSVLPVEKA RGPILFVVGE ENSP00000259407/1-418 LPHSAQLIST NALGLLELYR TFETTQVGAS Q-YLFPIEEA QGQFLFIVGE BACU017587/1-190 WLFSPHSLSI STLGLVELQR IFEDTRAEAS ETFFLPIEKA QGHFLFIVGE ENSTTRP00000013593/1-419 WPFSPHSLSI STLGLVELQH IFEDTRAEAS ETFFLPIEKA QGHFLFIVGE 401 450 bmy_12953T0/1-492 DDECFNSREY AEQALDQLRR HGRNSGRLLL YPGAGHLIEP PYSPLCYASW ENSBTAP00000036271/1-441 ADECFNSKEY AEQALDQLRR HGKSSGRMLS YPGAGHLIEP PYAPLCCVSW ENSP00000259407/1-418 GDKTINSKAH AEQAIGQLKR HGKNNWTLLS YPGAGHLIEP PYSPLCCAST BACU017587/1-190 EDMNVNGKVY AEQATEQLRR HGKNNWTLLS YPGVGHLIEP PYSPLCCASR ENSTTRP00000013593/1-419 EDMNVNSKVY AEQATEQLRR HGKNDWTLLS YPGVGHLIEP PYSPLCCSWR 451 500 bmy_12953T0/1-492 SRGLFCPLLW GGDPAGHAAA QEHAWGEIQK FFRQHLV-QS RSTL------ ENSBTAP00000036271/1-441 SRGLFLPMLW GGEPEGQAAA QEHSWQEILK FFRQHLV-LS RSTL------ ENSP00000259407/1-418 THDLR--LHW GGEVIPHAAA QEHAWKEIQR FLRKHLIPDV TSQL------ BACU017587/1-190 ISNLRLFMHW GGEVIPHVAA QERSWKEIQK FLRKHLIPVV TSCLLEEQIF ENSTTRP00000013593/1-419 ISNLHLFMHW GGEVIPHVAA QERSWKEIQK FLRKHLIPVV TSCL------ 501 550 bmy_12953T0/1-492 ------ ENSBTAP00000036271/1-441 ------ ENSP00000259407/1-418 ------ BACU017587/1-190 LEIQKQ ENSTTRP00000013593/1-419 ------