KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:46:45 2014 Check: 00 .. Name: ENSP00000346453/1-1081 Len: 1773 Check: 7051 Weight: 1.00 Name: ENSBTAP00000036318/1-1081 Len: 1773 Check: 9574 Weight: 1.00 Name: ENSTTRP00000008177/1-1076 Len: 1773 Check: 2111 Weight: 1.00 Name: bmy_16971T0/1-1743 Len: 1773 Check: 3961 Weight: 1.00 Name: BACU008673/1-1038 Len: 1773 Check: 3738 Weight: 1.00 // 1 50 ENSP00000346453/1-1081 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036318/1-1081 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008177/1-1076 ---------- ---------- ---------- ---------- ---------- bmy_16971T0/1-1743 PEGGSERPRG GIGAIGFSSK NLTWGVIRSL VPITAGLPQT GSAALRMTVL BACU008673/1-1038 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000346453/1-1081 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036318/1-1081 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008177/1-1076 ---------- ---------- ---------- ---------- ---------- bmy_16971T0/1-1743 GHPGSWSCRW LPLLLLLLLG TGRDPGVEGV THYKAGDPVI LYVNKVGPYH BACU008673/1-1038 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000346453/1-1081 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036318/1-1081 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008177/1-1076 ---------- ---------- ---------- ---------- ---------- bmy_16971T0/1-1743 NPQETYHYYQ LPVCCPEKIR HKSLSLGEVL DGDRMAESLY EIRFRENVEK BACU008673/1-1038 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000346453/1-1081 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036318/1-1081 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008177/1-1076 ---------- ---------- ---------- ---------- ---------- bmy_16971T0/1-1743 RILCHMQLSS AQVEQLRQAI EELYYFEFVV DDLPIRGFVG YMEESGFLPH BACU008673/1-1038 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000346453/1-1081 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036318/1-1081 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008177/1-1076 ---------- ---------- ---------- ---------- ---------- bmy_16971T0/1-1743 SHKIGLWTHL DFHLEFHGDR IIFANVSVRD VKPHSLDGLR PDEFLGLTHT BACU008673/1-1038 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000346453/1-1081 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036318/1-1081 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008177/1-1076 ---------- ---------- ---------- ---------- ---------- bmy_16971T0/1-1743 YSVRWSETSV ERRSDRRRGD DGGFFPRTLE IHWLSIINSM VLVFLLVGFV BACU008673/1-1038 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000346453/1-1081 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036318/1-1081 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008177/1-1076 ---------- ---------- ---------- ---------- ---------- bmy_16971T0/1-1743 AVILMRVLRN DLARYNLDEE TTSGGSGDDF DQGDNGWKII HTDVFRFPPY BACU008673/1-1038 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000346453/1-1081 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036318/1-1081 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008177/1-1076 ---------- ---------- ---------- ---------- ---------- bmy_16971T0/1-1743 RGLLCAVLGV GAQFLALGTG IIVMALLGMF NVHRHGAINS AAILLYALTC BACU008673/1-1038 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000346453/1-1081 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036318/1-1081 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008177/1-1076 ---------- ---------- ---------- ---------- ---------- bmy_16971T0/1-1743 CISGYVSSHF YRQIGGERWV WNIILTTSLF SVPFFLTWSV VNSVHWANGS BACU008673/1-1038 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000346453/1-1081 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036318/1-1081 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008177/1-1076 ---------- ---------- ---------- ---------- ---------- bmy_16971T0/1-1743 TQALPATTIL LLLTVWLLVG FPLTVIGGIF GKNNASAFDA PCRTKNIARE BACU008673/1-1038 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000346453/1-1081 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036318/1-1081 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008177/1-1076 ---------- ---------- ---------- ---------- ---------- bmy_16971T0/1-1743 IPPQPWYKST LIHMTVGGFL PFSAISVELY YIFATVWGRE QYTLYGILFF BACU008673/1-1038 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000346453/1-1081 ---------- ---------- ---------- ---------- ---MESAGLE ENSBTAP00000036318/1-1081 ---------- ---------- ---------- ---------- ---MEPAGLE ENSTTRP00000008177/1-1076 ---------- ---------- ---------- ---------- ---MEPAGLE bmy_16971T0/1-1743 VFAILLSVGA CISIALTYFH GFRSLHVLSL PQLRPSSGGS PAVMEPAGLE BACU008673/1-1038 ---------- ---------- ---------- ---------- ---MEPAGLE 601 650 ENSP00000346453/1-1081 QLLRELLLPD TERIRRATEQ LQIVLRAPAA LPALCDLLAS AADPQIRQFA ENSBTAP00000036318/1-1081 QILRELLLPD TERIRRATEQ LQIALRDPAS LSALCELLAS GGDPQIRQFA ENSTTRP00000008177/1-1076 QILRELLLPD TERIRRATEQ LQTALRDPAS LPALCELLAS AGDPQIRQFA bmy_16971T0/1-1743 QILRELLLPD TERIRRATEQ LQIALRDPAS LPALCELLAS AGDPQIRQFA BACU008673/1-1038 QILRELLLPD TERIRRATEQ LQIALRDPAS LPALCELLAS AGGPPIRQFA 651 700 ENSP00000346453/1-1081 AVLTRRRLNT RWRRLAAEQR ESLKSLILTA LQRETEHCVS LSLAQLSATI ENSBTAP00000036318/1-1081 AVLTRRRLST RWRRLAAEQR ESIKSLVLTV LQRETEHSVS LSLAQLSAAI ENSTTRP00000008177/1-1076 AVLTRRRLST GWRRLAAEQR ESIKSLILTV LQRETEHSVS LSLAQLSATV bmy_16971T0/1-1743 AVLTRRRLST GWRRLAAEQQ ESIKSLILTV LQRETEHSVS LSLAQLSATV BACU008673/1-1038 AVLTRRRLST GWRRLAAEQQ ER-------- ------HSVS LSLAQLSATV 701 750 ENSP00000346453/1-1081 FRKEGLEAWP QLLQLLQHST HSPHSPEREM GLLLLSVVVT SRPEAFQPHH ENSBTAP00000036318/1-1081 FRKEGLEAWP QLLQLLQHST HSPHIPEREM GLLLLSVVVT SRPEAFRPHH ENSTTRP00000008177/1-1076 FRKEGLEAWP QLMQLLQHSI RSLHVPEREM GLLLLSVVVT SRPEAFRPHH bmy_16971T0/1-1743 FRKEGLEAWP QLMQLLQHSI HSPHVPEREM GLLLLSVVVT SRPEAFRPHH BACU008673/1-1038 FRKEGLEAWP QLMQLLQHSI HSLHVPEREM GLLLLSVVVT SRPEAFRPHH 751 800 ENSP00000346453/1-1081 RELLRLLNET LGEVGSPGLL FYSLRTLTTM APYLSTEDVP LARMLVPKLI ENSBTAP00000036318/1-1081 RELLRLLNET LGEVGSPGLL FYSLRTLTTM APYLGIDDVP LARMLVPKLI ENSTTRP00000008177/1-1076 RELLRLLNET LGDVGSPGLL FYSLRTLTTM APYLGTDDVP LVRMLVPKLI bmy_16971T0/1-1743 RELLRLLNET LGDVGSPGLL FYSLRTLTTM APYLGTDDVP LVRMLVPKLI BACU008673/1-1038 RELLRLLNET LGDVGSPGLL FYSLRTLTTM APYLGTDDVP LVRMLVPKLI 801 850 ENSP00000346453/1-1081 MAMQTLIPID EAKACEALEA LDELLESEVP VITPYLSEVL TFCLEVARNV ENSBTAP00000036318/1-1081 VAVQTLIPID EAKACEAMEA LDELLESEVP IITSHLSEVL TFCLEVAKNV ENSTTRP00000008177/1-1076 VAVQTLIPVD EAKACEALEA LDELLESELP IITSHLSEVL TFCLEVARNV bmy_16971T0/1-1743 VAMQILIPVD EAKACEAXEA LDELLESELP IITSHLSEVL TFCLEVASNV BACU008673/1-1038 VAVQILIPVD EAKACEALEA LDELLESELP IITSHLSEVL TFCLEVARNV 851 900 ENSP00000346453/1-1081 ALGNAIRIRI LCCLTFLVKV KSKALLKNRL LPPLLHTLFP IVAAEPPPGQ ENSBTAP00000036318/1-1081 ALGDAIRVRI LCCLTFLVKV KSKALLKNRF LPPLLHTLFP IMAAEPPLGQ ENSTTRP00000008177/1-1076 ALGDAIRVRI LCCLTFLVKV KSKALLKNRL LPPLLHTLFP IMAAEPTLGQ bmy_16971T0/1-1743 ALGDAIRVRI LCCLTFLVKV KSKALLKNRL LPLLLHTLFP IMAAEPPLGQ BACU008673/1-1038 ALGDAIRVRI LCCLTFLVKV KSKALLKNRL LPPLLHTLFP IMAAEPPLGQ 901 950 ENSP00000346453/1-1081 LDPEDQDSEE EELEIELMGE TPKHFAVQVV DMLALHLPPE KLCPQLMPML ENSBTAP00000036318/1-1081 LDPEDQDVEE EELDPGLVGE TPKHFAVQVV DMLALHLPPE KLCPLLMPML ENSTTRP00000008177/1-1076 LDPEDQDSEE EELDVGLVGE TPKHFAIQVV DMLALYLPPE KLCPLLMPML bmy_16971T0/1-1743 LDPEDQDSEE EELDVGMVGE TPKHFAVQVV DMLALHLPPE KLCPLLTP-- BACU008673/1-1038 LDPEDQDSEE EELDVGLVGE TPKHFAVQVV DMLALHLPPE KLCPLLMPML 951 1000 ENSP00000346453/1-1081 EEALRSESPY QRKAGLLVLA VLSDGAGDHI RQRLLPPLLQ IVCKGLEDPS ENSBTAP00000036318/1-1081 EEALRSQSPY QRKAGLLVLA VLSDGAGDHI RQRLLPPLLQ IVCKSLEDPS ENSTTRP00000008177/1-1076 EEALRSQSPY QRKAGLLVLA VLSDGAGDHI RQRLLSPLLQ IVCRSLEDPS bmy_16971T0/1-1743 -----SSCP- ---------- ---------A PSRLLSPLLQ IVCRSLEDPS BACU008673/1-1038 EEALRSQSPY QRKAGLLVLA VLSDGAGDHI RQRLLSPLLQ IVCRSLEDPS 1001 1050 ENSP00000346453/1-1081 QVVRNAALFA LGQFSENLQP HISSYSREVM PLLLAYLKSV PLGHTHHLAK ENSBTAP00000036318/1-1081 QVVRNAALFA LGQFSENLQP HISSYSGDVM PLLLSYLKSV PPGHTHHLAK ENSTTRP00000008177/1-1076 QVVRNAALFA LGQFSENLQP HIRSYSGEVM PLLLAYLKSV PPGCTRHLAK bmy_16971T0/1-1743 QVVRNAALFA LGQFSENLQP HIRSYSGEVM PLLLAYLKSV PPGCTRHLAK BACU008673/1-1038 QVVRNAALFA LGQFSENLQP HIRSYSGEVM PLLLAYLKSV PPGCTRHLAK 1051 1100 ENSP00000346453/1-1081 ACYALENFVE NL-------- ---------- ---------- ---------- ENSBTAP00000036318/1-1081 ACYALENFVE NL-------- ---------- ---------- ---------- ENSTTRP00000008177/1-1076 ACYALENFVE NL-------- ---------- ---------- ---------- bmy_16971T0/1-1743 ACYALENFVE NLGGNALWGY EGGDGAVALA EGGRRCSSTN HCPWWGEGCG BACU008673/1-1038 ACYALENFVE NL-------- ---------- ---------- ---------- 1101 1150 ENSP00000346453/1-1081 ---------- ---------- -----GPKVQ PYLPELMECM LQLLRNPSSP ENSBTAP00000036318/1-1081 ---------- ---------- -----GPKVQ PYLPELMECM LQPLRTPSSS ENSTTRP00000008177/1-1076 ---------- ---------- -----GPEVQ HYLTELMEYM LQPLRNPNSS bmy_16971T0/1-1743 RATRRVGLEA GGRPGLVGRG VPFPTGPEVQ HYLTELMECV LQPLRNPGSS BACU008673/1-1038 ---------- ---------- -----GPEVQ HYLTELMECM LQPLRNPSSS 1151 1200 ENSP00000346453/1-1081 RAKELAVSAL GAIATAAQAS LLPYFPAIME HLREFLLTGR EDLQPVQIQS ENSBTAP00000036318/1-1081 RSKELAVSAL GAIATAAQAS MLPYFPTIMA HLREFLLTSH EDLQPVRIQS ENSTTRP00000008177/1-1076 RAKELAVSAL GAIATAAQAS ILPYFPTIVE HLREFLLTGH EDLQPVRIQS bmy_16971T0/1-1743 RAKELAVSAL AAIATAAQAS MLPYFPTIVE HLREFLLTGH EDLQPVRIQS BACU008673/1-1038 RAKELAVSAL GAIATAAQAS MLPYFPTIVE HLREFLLTGH EDLQPVRIQS 1201 1250 ENSP00000346453/1-1081 LETLGVLARA VGEPMRPLAE ECCQLGLGLC DQVDDPDLRR CTYSLFAALS ENSBTAP00000036318/1-1081 LETLGVLVRA VGEPMRPLAE ECCQLGLGLC DQVDDPDLRR CTYSLFAALS ENSTTRP00000008177/1-1076 LETLGVLVRA VGEPMRPLAE ECCQLGLGLC DQVDDPDLRR CTYSL--ALS bmy_16971T0/1-1743 LETLGVLVRA VGEPMRPLAE ECCQLGLGLC DQVDDPDLRR CTYSLFAALS BACU008673/1-1038 LETLGVLARA VGEPMRPLAE ECCQLGLGLC DQVDDPDLRR CTYSLFAALS 1251 1300 ENSP00000346453/1-1081 GLMGEGLAPH LEQITTLMLL SLRSTEGIVP QYDGSSSFLL FDDESDGEEE ENSBTAP00000036318/1-1081 GLMGGSLAPH LPQITTLMLL SLRSTEGIVP QYDGSRSFLL FDDESSGEEE ENSTTRP00000008177/1-1076 GLMGESLAPH LPRITTLMLL SLRSTQGIVP QCTGSSTFLL FDDEHGGEEE bmy_16971T0/1-1743 GLMGESLAPH LPQITTLMLL SLRSTEGIVP QYDGSSTFLL FDDERGGEEE BACU008673/1-1038 GLMGESLTPH LPRITTLMLL SLRSTEGIMP QYNGSSTFLL FDDERGGEEE 1301 1350 ENSP00000346453/1-1081 EELMDEDVEE EDDSEISGYS VENAFFDEKE DTCAAVGEIS VNTSVAFLPY ENSBTAP00000036318/1-1081 EELMEEDDEE EDDSEISGYS VGNAFFDEKE DTCAALGEIS VNTSVAFLPY ENSTTRP00000008177/1-1076 EELVEEDSEE EEDSEVSGYS VENAFFDEKE DACAALGEIS VNASVAFLPY bmy_16971T0/1-1743 EELAEEDEEE EDDSEISGYS VENAFFDEKE DACAALGEIS VNASVAFLPY BACU008673/1-1038 EELAEEDEEE EDDSEISGYS VENAFFDEKE DACAALGEIS VNASVAFLPY 1351 1400 ENSP00000346453/1-1081 MESVFEEVFK LLECPHLNVR KAAHEALGQF CCALHKACQS CPSEPNTAAL ENSBTAP00000036318/1-1081 METVFEEVFK LLECPHLNVR KAAHEALGQL CCALHKACQS CPSESNTAAL ENSTTRP00000008177/1-1076 METVFEEVFT LLECPHLSVR KAAHEALGQF CCALHKACQS CPSEPNTAAL bmy_16971T0/1-1743 METVFEEVFT LLECPHLNVR KAAHEALGQF CCALHKACQS CPSEPNTAAL BACU008673/1-1038 METVFEEVFT LLECPHLNVR KAAHEALGQF CCALHKACQS CPSEPNTAAL 1401 1450 ENSP00000346453/1-1081 QAALARVVPS YMQAVNRERE RQVVMAVLEA LTGVLRSCGT LTLKPPGRLA ENSBTAP00000036318/1-1081 QAALARVVPS YLQAVNGERE RQVVMAVLEA LTAVLRSCGG LALQPPGRLA ENSTTRP00000008177/1-1076 QAALARVVPS YVRAVNRERE RQVVMAVLAA LTAVLRGSGS LALQPPGRLA bmy_16971T0/1-1743 QAALARVVPS YVRAVNGERE RQVVMAVLAA LTAVLRGSGS VALQPPGRLA BACU008673/1-1038 QAALARVVPS YVRAVTGERE RQVVMAVLSA LTAVLRGSGS VALQPPGRLA 1451 1500 ENSP00000346453/1-1081 ELCGVLKAVL QRKTACQDTD EEEEEEDDDQ AEYDAMLLEH AGEAIPALAA ENSBTAP00000036318/1-1081 ELCQVLKAVL QRKTACQDAD EEDEEDEEDQ AEYDAMLLEH AGEAIPALAA ENSTTRP00000008177/1-1076 EICHALKGVL QRKTACQDAD ---QEEDEDQ AEYDAMLLEH AGEAIPALAA bmy_16971T0/1-1743 ELCHALKAVL QRKTACQDTD ---QEEDEDQ AEYDAMLLEH AGEAIPALAT BACU008673/1-1038 ELCHALKAVL QRKTACQDTD ---QEEDEDQ AEYDAMLLEH AGEAIPALAA 1501 1550 ENSP00000346453/1-1081 AAGGDSFAPF FAGFLPLLVC KT-------- ---------- ---------- ENSBTAP00000036318/1-1081 AAGGDAFAPF FAGFLPLLLC KT-------- ---------- ---------- ENSTTRP00000008177/1-1076 AAGGDAFAPF FAGFLPLLLC KT-------- ---------- ---------- bmy_16971T0/1-1743 AAGGDAFAPF FAGFLPLLLC KTVSALSSGF EPHWACAPCA QFPTLSQSQA BACU008673/1-1038 AAGGDAFAPF FAGFLPLLLC KT-------- ---------- ---------- 1551 1600 ENSP00000346453/1-1081 --------KQ GCTVAEKSFA VGTLAETIQG LGAASAQFVS RLLPVLLSTA ENSBTAP00000036318/1-1081 --------KQ GCTVAEKSFA VGTLAESIQG LGAASAQFVS RLFPVLLSAS ENSTTRP00000008177/1-1076 --------KQ GCTVAEKSFA VGTLAESIQG LGAASAQFVS RLLPVLLSTA bmy_16971T0/1-1743 DSHSSPHQKQ GCTVAEKSFA VGTLAESIQG LGAASAQFVS RLLPVLLSTA BACU008673/1-1038 --------KQ GCTVAEKSFA VGTLAESIQG LGAASAQFVS RLLPVLLSTA 1601 1650 ENSP00000346453/1-1081 QEADPEVRSN AIFGMGVLAE HGGHPAQEHF PKLLGLLFPL LARERHDRVR ENSBTAP00000036318/1-1081 READPEVRSN AIFGLGVLAE HGGRPAQEHF PKLLGLLLPL LARERHDRVH ENSTTRP00000008177/1-1076 READPEVRSN AVFGLGVLAE HGGRPAQEHF PKLLGLLLPL LARERHDRVH bmy_16971T0/1-1743 READPEVRSN AVFGLGVLAE HGGRPAQEHF PKLLGLLLPL LARERHDRVH BACU008673/1-1038 READPE---- ---------- ---------- --LLGLLLPL LARERHDRVH 1651 1700 ENSP00000346453/1-1081 DNICGALARL LMASPTRKPE PQVLAALLHA LPLKEDLEEW VTIGRLFSFL ENSBTAP00000036318/1-1081 DNICGALARL LIASPTRKPE PQVLAPLLHA LPLKEDLEEW VTMGHLFSFL ENSTTRP00000008177/1-1076 DNICGALARL LMASPTRKPE PQVLAALLHA LPLKEDLEEW VTLGHLFSFL bmy_16971T0/1-1743 DNICGALARL LMASPTRKPE PQVLAALLHA LPLKEDLEEW VTLGHLFSFL BACU008673/1-1038 DNICGALARL LMASPTRKPE PQVLAALLHA LPLKEDLEEW VTLGHLFSFL 1701 1750 ENSP00000346453/1-1081 YQSSPDQVID VAPELLRICS LILADNKIPP DTKAALLLLL TFLAKQHTDS ENSBTAP00000036318/1-1081 YQSSPDQVVD VAPELLRIYS LIQAENKIPS DTKAALLLLL TFLAKQHTDS ENSTTRP00000008177/1-1076 YQSSPDQVVD VAPELLRICS LILAENKVPP DTKASLLLLL TFLAKQHTDS bmy_16971T0/1-1743 YQSSPDQVVD VAPELLRICS LILAENKVPP DTKASLLLLL TFLARQHADS BACU008673/1-1038 YQSSPDQVVD VAPELLRICS LILAENKVPP DTKASLLLLL TFLARQHADS 1751 1800 ENSP00000346453/1-1081 FQAALGSLPV DKAQELQAVL GLS ENSBTAP00000036318/1-1081 FHSALGSLPG DKAQELQAVL GLT ENSTTRP00000008177/1-1076 FRSALGSLPG NKAQELQAIL GLT bmy_16971T0/1-1743 FHSALGSLPG NKAQELQAIL GLT BACU008673/1-1038 FHSALGSLPG NKAQELQAIL GLT