KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:46:46 2014 Check: 00 .. Name: ENSBTAP00000036326/1-415 Len: 419 Check: 3442 Weight: 1.00 Name: ENSTTRP00000005356/1-412 Len: 419 Check: 6886 Weight: 1.00 Name: bmy_05695T0/1-333 Len: 419 Check: 8811 Weight: 1.00 Name: BACU006671/1-398 Len: 419 Check: 5531 Weight: 1.00 // 1 50 ENSBTAP00000036326/1-415 MEALQRQQAA RLAQGVGPLA PPHPPPPPPP PAAPPGPSFP GSHTLEAPEK ENSTTRP00000005356/1-412 MEALQRQQAA RLAQGVGPLA PPR-PPPPPP R-----PSFP GSRTLQAPDG bmy_05695T0/1-333 MEALQRQQAA RLAQGVGPLA PPR-PPPPPP R-----PSFP GSRTLQAPDG BACU006671/1-398 MEALQRQQAA RLAQGVGPLA PPRPPPPPPP R-----PSFP GSRTLQAPDG 51 100 ENSBTAP00000036326/1-415 GLGEVGAEEE EDGQDEEE-E EAGAEDEAAK ESRPGTRGSS SPSSQPPGPH ENSTTRP00000005356/1-412 GLGEVGAEEE EDAQEDEEGE EAGTEEEAAE ESHPGTRGTS SPSSQPPGPH bmy_05695T0/1-333 GLGEVGAEEE EDAQEDEEGE EAGAEDEAAE ESHPGTRGTS SPSSQLPGPH BACU006671/1-398 GFGEVGAEEE EDAQEDEEGE EAGTEEEAAE ESHPGTRGTS SPSSQPPGPH 101 150 ENSBTAP00000036326/1-415 PHEWTYEEQF KQLYELDADP KRKEFLDDLF SFMQKRGTPV NRVPIMAKQV ENSTTRP00000005356/1-412 PHEWTYEEQF KQLYELDADP KRKEFLDDLF SFMQKRGTPV NRVPIMAKQV bmy_05695T0/1-333 PHEWTYKEQF KQLYELDADP KRKEFLDDLF SFMQKRGTPV NRVPIMAKQV BACU006671/1-398 PHEWTYEEQF KQLYELDADP KRKEFLDDLF SFMQKRGTPV NRVPIMAKQV 151 200 ENSBTAP00000036326/1-415 LDLYALFRLV TAKGGLVEVI NRKVWREVTR GLSLPTTITS AAFTLRTQYM ENSTTRP00000005356/1-412 LDLYALFRLV TAKGGLVEVI NRKVWREVTR GLSLPTTITS AAFTLRTQYM bmy_05695T0/1-333 LDLYALFRLV TAKGGLVEVI NRKVWREVTR GLSLPTTITS AAFTLRTQYM BACU006671/1-398 LDLYALFRLV TARGGLVEVI NRKVWREVTR GLSLPTTITS AAFTLRTQYM 201 250 ENSBTAP00000036326/1-415 KYLYPYECET RALSSPGELQ AAIDSNRREG RRQAYTAAPL FGLAGQPPRG ENSTTRP00000005356/1-412 KYLYPYECET RALSSPGELQ AAIDSNRREG RRQAYTNAPL FGLAGQSPWG bmy_05695T0/1-333 KYLYPYECET RALSSPGELQ AAIDSNRREG ---------- ---------- BACU006671/1-398 KYLYPYECET RALSSPGELQ AAIDSNRREG RRQAYTSAPL FSLAGQPPRA 251 300 ENSBTAP00000036326/1-415 TPGPAPEPGP AP--PTPGPR SAQGPASGLP AHACAQLSPS PIKKEESRIP ENSTTRP00000005356/1-412 TLGPASGSRP APPAPTPGPR TARGSASGLP AHACAQLSPS PIKKEESRIP bmy_05695T0/1-333 ---------- ---------- ---------- ---------- ----QESGIP BACU006671/1-398 TLGLASAPGT APPAPTPGPR TAQGSASGLP AHACAQLSPS PIKKEESGIP 301 350 ENSBTAP00000036326/1-415 TPRLALPVGL AFGPAREKVA PEEPPEKRAV LMGPMDLPRH SAPPSFLPRG ENSTTRP00000005356/1-412 TPRLALPVGL AFGPAREKVA PEEPPEKRAV LMGPMDPPRH GAPPSFLPRG bmy_05695T0/1-333 TPRLALPVDL AFGPAREKLA PEEPPEKRAV LMGPMDPPRH GAPPSFLPRG BACU006671/1-398 TPRLALPVGL AFGAAREKLA PEEPPEKRAV LMGPMDPPRH GAPPSFLPRG 351 400 ENSBTAP00000036326/1-415 KVPLREERLD GPLSLAGTGI SSINMALEIN GVVYTGV-LF ARRQPVPASQ ENSTTRP00000005356/1-412 KVPLREEQLD GPLNLAGSGI SSINMALEIN GVVYTGV-LF ARCQPVPASQ bmy_05695T0/1-333 KVPLREEQLD GPLNLAGSGI SSINMALEIN GVVYTGLHLF ESDLLLFRSQ BACU006671/1-398 KVPLREEQLD GPLNLAGSGI SSINMALEIN GVVYTGLHLF ESDLLLFRSQ 401 450 ENSBTAP00000036326/1-415 GPTNPAPQLP TGPPSSTSP ENSTTRP00000005356/1-412 GPANPAPPPL MGPPSSASP bmy_05695T0/1-333 VKG------- --------- BACU006671/1-398 VKG------- ---------