KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:46:47 2014 Check: 00 .. Name: ENSP00000380008/1-352 Len: 355 Check: 9119 Weight: 1.00 Name: ENSBTAP00000036335/1-349 Len: 355 Check: 9296 Weight: 1.00 Name: bmy_16959T0/1-234 Len: 355 Check: 9860 Weight: 1.00 Name: BACU008678/1-234 Len: 355 Check: 326 Weight: 1.00 // 1 50 ENSP00000380008/1-352 --MNTTSSAA PPSLGVEFIS LLAIILLSVA LAVGLPGNSF VVWSILKRMQ ENSBTAP00000036335/1-349 --MNTTSPAA PSSSGVSFIS LLVIIVLSVA LAVGLPGNSF VVWSILAKLR bmy_16959T0/1-234 MATSTTSPEA PSSPGVMFIS LLVIIVLSVA LAVGLPGNSF VVWSILVKMR BACU008678/1-234 MATSTTSPEA PSSPGVMFIS LLVIIVLSVA LAVGLPGNSF VVRSILVKMR 51 100 ENSP00000380008/1-352 KRSVTALMVL NLALADLAVL LTAPFFLHFL AQGTWSFGLA GCRLCHYVCG ENSBTAP00000036335/1-349 KRSVTALMVL HLALADLAVL LTAPFFLYSV AQGTWTFGLS SCRLFHYVCG bmy_16959T0/1-234 KRSVTALLVL HLALADLAVL LTAPFFLYYT AQGTWTFGLA GCRLFHYVCG BACU008678/1-234 KHSVTALLAL HLALADLAVL LTAPFFLYYT AQGTWTFGLA GCRLFHYVCG 101 150 ENSP00000380008/1-352 VSMYASVLLI TAMSLDRSLA VARPFVSQKL RTKAMARRVL AGIWVLSFLL ENSBTAP00000036335/1-349 VSMYASVLLI MTMSLDRSLA VALPFVSQKL RTKAVAWRVL AGIWVMSVLL bmy_16959T0/1-234 VSMYASILLI TAMSLDRSLA VT-------- ---------- ---------- BACU008678/1-234 VSMYASVLLI TAMSLDRSLA VT-------- ---------- ---------- 151 200 ENSP00000380008/1-352 ATPVLAYRTV VPWKTNMSL- CFPRYPSEGH RAFHLIFEAV TGFLLPFLAV ENSBTAP00000036335/1-349 ATPVLLYRTV HLGLNNRSLT CFLKYPSERH RAFHLFFEVI TGFLLPFLVV bmy_16959T0/1-234 ---------- -LGPDNRSLV CLPKYPSEAH RAFHLFFEVV TGFLLPFLAV BACU008678/1-234 ---------- -LGPDNRSLF CFPKYPSEAH RGFHLFFEVV TGFLLPFLAV 201 250 ENSP00000380008/1-352 VASYSDIGRR LQARRFRRSR RTGRLVVLII LTFAAFWLPY HVVNLAEAGR ENSBTAP00000036335/1-349 VASYCDIGRR LRARRFRRSR RTGRLVALII LAFAAFWLPY HVVNLAEGFR bmy_16959T0/1-234 VASYSDIWRR LRVRRFRRRR CTGRLLAFII LAFAAFWLPY HVVDLAEAVR BACU008678/1-234 VASYSDIWRR LRVRRFRRSR CTGRLLAFII LAFTAFWLPY HVVNLAEAVR 251 300 ENSP00000380008/1-352 ALAGQAAGLG LVGKRLSLAR NVLIALAFLS SSVNPVLYAC AGGGLLRSAG ENSBTAP00000036335/1-349 AAAGKALGSG PVGRRLLLAR HVLITLAFLS SSVNPLLYAC AGGGLLRSAG bmy_16959T0/1-234 ALAGKTMGSG PESQRLHLAR K--------- ---------- ------RS-- BACU008678/1-234 ALAGKTMGSG PESQRLHLAR K--------- ---------- ------RS-- 301 350 ENSP00000380008/1-352 VGFVAKLLEG TGSEASSTRR GGSLGQTARS GPAALEPGPS ESLTASSPLK ENSBTAP00000036335/1-349 VGFIAKLLEG TGSETSSSRR KGTLAQTLRG TPASPEPDPA ESLTAST--- bmy_16959T0/1-234 ---------- ---------- ---------- ---------- ---------- BACU008678/1-234 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000380008/1-352 LNELN ENSBTAP00000036335/1-349 -NPLE bmy_16959T0/1-234 ----- BACU008678/1-234 -----