KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:46:48 2014 Check: 00 ..
Name: ENSP00000296266/1-1292 Len: 1340 Check: 4329 Weight: 1.00
Name: ENSBTAP00000036344/1-1241 Len: 1340 Check: 5311 Weight: 1.00
Name: bmy_00403T0/1-1110 Len: 1340 Check: 8062 Weight: 1.00
Name: ENSTTRP00000010685/1-1263 Len: 1340 Check: 4453 Weight: 1.00
Name: BACU015190/1-1285 Len: 1340 Check: 9773 Weight: 1.00
//
1 50
ENSP00000296266/1-1292 ---------- -MRAVLTWRD K--------- ----AEHC-- --------IN
ENSBTAP00000036344/1-1241 ---------- -MRAVLTWRD K--------- ----VEQC-- --------VY
bmy_00403T0/1-1110 ---------- -MRAVLTWRD K--------- ----AEQC-- --------VY
ENSTTRP00000010685/1-1263 ---------- ---------- ---------- ---------- --------VY
BACU015190/1-1285 MQFLAIIFLS HTQSVLHNGN KSLLSLPLAD LIILVPNCPF VLSCLLFSVY
51 100
ENSP00000296266/1-1292 DIAFKPDGTQ LILAAGSRLL VYDTSDGTLL QPLKGHKDTV YCVAYAKDGK
ENSBTAP00000036344/1-1241 DLAFKPDGTQ LIVAAGNRLL VYDTSDGTLL QPLKGHKDTV YCVAYAKDGK
bmy_00403T0/1-1110 DLAFKPDGTQ LILAAGNRLL VYDTSDGTLL QPLKGHKDTV YCVAYAKDGK
ENSTTRP00000010685/1-1263 DLAFKPDGTQ LILAAGNRLL VYDTSDGTLL QPLKGHKDTV YCVAYAKDGK
BACU015190/1-1285 DLAFKPDGTQ LILAAGNRLL VYDTSDGTLL QPLKGHKDTV YCVAYAKDGK
101 150
ENSP00000296266/1-1292 RFASGSADKS VIIWTSKLEG ILKYTSWSVM S---SLHLHL PFLGLHKTVR
ENSBTAP00000036344/1-1241 RFASGSADKS VIIWTSKLEG ILKYT----- ---------- ----------
bmy_00403T0/1-1110 RFASGSADKS VIIWTSKLEG ILKYT----- ---------- ----------
ENSTTRP00000010685/1-1263 RFASGSADKS VIIWTSKLEG ILKYTYWSVF SLDLHPVLMN VFPGLHKAIS
BACU015190/1-1285 RFASGSADKS VIIWTSKLEG ILKYT----- ---------- ----------
151 200
ENSP00000296266/1-1292 VTATDKAPKG QGGRIDCLRP SVQNQPGQKH NDAIQCVSYN PITHQLASCS
ENSBTAP00000036344/1-1241 ---------- ---------- ---------H NDSIQCVSYN PITHQLASCS
bmy_00403T0/1-1110 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000010685/1-1263 VRAINMALLR Q--------- ---------H NDSIQCVSYN PVTHQLASCS
BACU015190/1-1285 ---------- ---------- ---------H NDSIQCVSYN PVTHQLASCS
201 250
ENSP00000296266/1-1292 SSDFGLWSPE QKSVSKHKSS SKIICCSWTN DGQYLALGMF NGIISIRNKN
ENSBTAP00000036344/1-1241 SSDIGLWSPE QKSVSKHKSS SKITCCSWTN DGQYLALGMF NGVVSIRNKN
bmy_00403T0/1-1110 ---------- ---------- -------WTN DGQYLALGMF NGIISIRNKN
ENSTTRP00000010685/1-1263 SSDFGLWSPE QKSVSKHKSS SKITCCSWTN DGQYLALGMF SGVISIRNRN
BACU015190/1-1285 SSDFGLWSPE QKSVSKHKSS SKITCCSWTN DGQYLALGMF NGVISIRNKN
251 300
ENSP00000296266/1-1292 GEEKVKIERP GGSLSPIWSI CWNPSSRWES FWMNRENEDA EDVIVNRYIQ
ENSBTAP00000036344/1-1241 GEEKVKIERP GGSLSPIWSI SWNPSSRWEN FWMNIEIEDS EEAIVSRYFQ
bmy_00403T0/1-1110 GEEKVKIERP GGSLSPVWSI CWNPSSRWES FWMNRENEDA EEVIVNRYFQ
ENSTTRP00000010685/1-1263 GEEKVKIERP GGSLSPLWSI CWSPSSRWES FWMNRENEDA EEVIVNRYFQ
BACU015190/1-1285 GEEKVKIERP GGSLSPVWSI CWNPSSRWQS FWMNRENEDA EEVIVNRYFQ
301 350
ENSP00000296266/1-1292 EIPSTLKSAV YSSQGSEAEE EEPEEEDDSP RDDNLEERND ILAVADWGQK
ENSBTAP00000036344/1-1241 DIPSTLKSAV YSSQGSEAEE DEPEEEDNGA GDDSLEERNH KRAVADWGQK
bmy_00403T0/1-1110 EIPSTLKSAV YSSQGSEAEE EEPEEEDDSP RDDNLEEHND ILAVADWGQK
ENSTTRP00000010685/1-1263 EISSTLKSAV YSSQGSEAEE EEPEEEDDSP RDDNLEEHND ILAVADWGQK
BACU015190/1-1285 EIPSTLKSAV CSSQGSEAEE EEPEEEDDSP RDDNLEEHND ILAVADWGQK
351 400
ENSP00000296266/1-1292 VSFYQLSGKQ IGKDRALNFD PCCISYFTKG EYILLGGSDK QVSLFTKDGV
ENSBTAP00000036344/1-1241 LSFYQLSGKQ IGKDHSLNFD PCCISYFTKG EYILLGGSDK QVSLFTKDGV
bmy_00403T0/1-1110 LSFYQLSGKQ IGKDRSLNFD PCCISYFTKG EYILLGGSDK QVSLFTKDGV
ENSTTRP00000010685/1-1263 LSFYQLSGKQ IGKDRSLNFD PCCLSYFTKG EYILLGGSDK QVSLFTKDGV
BACU015190/1-1285 LSFYQLSGKQ IGKDRSLNFD PCCINYFTKG EYILLGGSDK QVSLFTKDGV
401 450
ENSP00000296266/1-1292 RLGTVGEQNS WVWTCQAKPD SNYVVVGCQD GTISFYQLIF STVHGLYKDR
ENSBTAP00000036344/1-1241 RLGAVGEQTS WVWTCKVKPD SNYVVVGCQD GTISFYQLIF STVHGLYKDR
bmy_00403T0/1-1110 RLGTVGEQNS WVWTCKVKPD SNYVVVGCQD GTISFYQLIF STVHGLYKDR
ENSTTRP00000010685/1-1263 RLGTVGEQNS WVWTCKVKPD SNYVVVGCQD GTISFYQLIF STVHGLYKDR
BACU015190/1-1285 RLGTVGEQNS WVWTCKVKPD SNYVVVGCQD GTISFYQLIF STVHGLYKDR
451 500
ENSP00000296266/1-1292 YAYRDSMTDV IVQHLITEQK VRIKCKELVK KIAIYRNRLA IQLPEKILIY
ENSBTAP00000036344/1-1241 YAYRDSMTDV IVQHLITEQK VRIKCKELVK KIAIYKNRLA IQLPEKILIY
bmy_00403T0/1-1110 YAYRDSMTDV VVQHLITEQK VRIKCKELVK KIAIYKNRLA IQLPEKILIY
ENSTTRP00000010685/1-1263 YAYRDSMTDV IVQHLITEQK VRIKCKELVK KIAIYKNRXX XXXXXXXXXX
BACU015190/1-1285 YAYRDSMTDV IVQHLITEQK VRIKCKELVK KIAIYKNRLA IQLPEKILIY
501 550
ENSP00000296266/1-1292 ELYSEDLSDM HYRVKEKIIK KFECNLLVVC ANHIILCQEK RLQCLSFSGV
ENSBTAP00000036344/1-1241 ELYSEDSLDM RYRVKEKIAR KFECNLLVVC ADHIILCQER RLQCLSFSGV
bmy_00403T0/1-1110 ELYSDDSLDM RYRVKEKIVR KFECNLLVVC ADHIILCQEK RLQCLSFSGV
ENSTTRP00000010685/1-1263 ELYSDDSLDM RYRMKEKIVR KFECNLLVVC ADHIILCQEK RLQCLSFSGV
BACU015190/1-1285 ELYSDDSLDM RYRVKEKIVR KFECNLLVVC ADHIILCQEK RLQCLSFSGV
551 600
ENSP00000296266/1-1292 KEREWQMESL IRYIKVIGGP PGREGLLVGL KNGQILKIFV DNLFAIVLLK
ENSBTAP00000036344/1-1241 KEREWQMESL IRYIKVIGGP PGREGLLVGL KNGQILKIFV DNLFAIVLLK
bmy_00403T0/1-1110 KEREWQMESL IRYIKVIGGP PGREGLLVGL KNGQILKIFV DSLFAIVLLK
ENSTTRP00000010685/1-1263 KEREWQMESL IRYIKVIGGP PGREGLLVGL KNGQILKIFV DSLFAIVLLK
BACU015190/1-1285 KEREWQMESL IRYIKVIGGP PGREGLLVGL KNGQILKIFV DSLFAIVLLK
601 650
ENSP00000296266/1-1292 QATAVRCLDM SASRKKLAVV DENDTCLVYD IDTKELLFQE PNANSVAWNT
ENSBTAP00000036344/1-1241 QATAVRCLDM SASRNKLAVV DENDMCLVYD IHTKELLFQE PNANSVAWNT
bmy_00403T0/1-1110 QATAVRCLDM SASRNKLAVV DENDTCLVYD IHTKELLFQE PNANSVAWNT
ENSTTRP00000010685/1-1263 QATAVRCLDM SASRNKLAVV DENDTCLVYD IHTKELLFQE PNANSVAWNT
BACU015190/1-1285 QATAVRCLDM SASRNKLAVV DENDTCLVYD IHTKELLFQE PNANSVAWNT
651 700
ENSP00000296266/1-1292 QCEDMLCFSG GGYLNIKAST FPVHRQKLQG FVVGYNGSKI FCLHVFSISA
ENSBTAP00000036344/1-1241 QCEDMLCFSG GGYLNIKAST FPVHQQKLQG FVVGYNGSKI FCLHVFSMSA
bmy_00403T0/1-1110 QCEDMLCFSG GGYLNIKAST FPVHQQKLQG FVVGYNGSRI FCLHAFSMSA
ENSTTRP00000010685/1-1263 QCEDMLCFSG GGYLNIKAST FPVHQQKLQG FVVGYNGSRI FCLHAFSMSA
BACU015190/1-1285 QCEDMLCFSG GGYLNIKAST FPVHQQKLQG FVVGYNGSRI FCLHAFSMSA
701 750
ENSP00000296266/1-1292 VEVP------ -----QSAPM YQYLDRKLFK EAYQIACLGV TDTDWRELAM
ENSBTAP00000036344/1-1241 VEVP------ -----QSAPM YQYLDRKMFR EAYQIACLGV TDADWRELAM
bmy_00403T0/1-1110 VEVP------ -----QSAPM YQYLDRKMFR EAYQIACLGV TDTDWRELAM
ENSTTRP00000010685/1-1263 VEVP------ -----QSAPM YQYLDRKMFR EAYQIACLGV TDTDWRELAM
BACU015190/1-1285 VEVPQAVFFP FDEILQSAPM YQYLDRKMFR EAYQIACLGV TDTDWRELAM
751 800
ENSP00000296266/1-1292 EALEGLDFET AKKAFIRVQD LRYLELISSI EERKKRGETN NDLFLADVFS
ENSBTAP00000036344/1-1241 EALEGLEFET AKKAFTRVQD LRYLELINSI EERKKRGETN NDLFLADVFS
bmy_00403T0/1-1110 EALEGLEFET AKKAFTRVQD LRYLELINSI EERKKRGETN NDLFLADVFA
ENSTTRP00000010685/1-1263 EALEGLEFET AKKAFTRVQD LRYLELINSI EERKKRGETN NDLFLADVFS
BACU015190/1-1285 EALEGLEFET AKKAFTRVQD LRYLELINSI EERKKRGETN NDLFLADVFS
801 850
ENSP00000296266/1-1292 YQGKFHEAAK LYKRSGHENL ALEMYTDLCM FEYAKDFLGS GDPKETKMLI
ENSBTAP00000036344/1-1241 YQGKFHEAAK LYKRSGHENL ALDMYTELRM FEYAKDFLGS EDPKETKMLI
bmy_00403T0/1-1110 YQGKFHEAAK LYKRSGHENL ALDMYTDLRM FEYAKDFLGS GDPKETKMLI
ENSTTRP00000010685/1-1263 YQGKFHEAAR LYKRSGHENL ALDMYTDLRM FEYAKDFLGS GDPKETKMLI
BACU015190/1-1285 YQGKFHEAAK LYKRSGHENL ALDMYTDLRM FEYAKDFLGS GDPKETKMLI
851 900
ENSP00000296266/1-1292 TKQADWARNI KEPKAAVEMY ISAGEHVKAI EICGDHGWVD MLIDIARKLD
ENSBTAP00000036344/1-1241 TKQADWARNI NEPKAAVEMY ISAGEHCKAI EISGEHGWVD MLIDIARKLD
bmy_00403T0/1-1110 TKQADWARNI NEPKAAVEMY ISAGEHGKAI EISGDHGWVD TLIDIARKLD
ENSTTRP00000010685/1-1263 TKQADWARNI NEPKAAVEMY ISAGEHGKAI EISGDHGWVD TLIDIARKLD
BACU015190/1-1285 TKQADWARNI NEPKAAVEMY ISAGEHGKAI AISGDHGWVD TLIDIARKLD
901 950
ENSP00000296266/1-1292 KAEREPLLLC ATYLKKLDSP GYAAETYLKM GDLKSLVQLH VETQRWDEAF
ENSBTAP00000036344/1-1241 KAEREPLLMC AHFFKKLDNP GYAAETYLKI GDLKSLVQLH VETQRWDEAF
bmy_00403T0/1-1110 KAEREPLLMC AHYFKKLDNP GYAAETYLKI GDLKSLVQLH VETQRWDEAF
ENSTTRP00000010685/1-1263 KAEREPLLMC AHYFKKLDNP GYAAETYLKI GDLKSLVHLH VDTQRWDEAF
BACU015190/1-1285 KAEREPLLMC AHYFKKLDNP GYAAETYLKI GDLKSLVQLH VETQSWDEAF
951 1000
ENSP00000296266/1-1292 ALGEKHPEFK DDIYMPYAQW LAENDRFEEA QKAFHKAGRQ REAVQVLEQL
ENSBTAP00000036344/1-1241 ALGEKHPEFK DDIYVPYAQW LAENDRFEEA QKAFHKAGRQ GEAVRVLEQL
bmy_00403T0/1-1110 ALGEKHPEFK DDIYVPYAQW LAESDRFEEA QKAFHKAGRQ GEAVRVLEQL
ENSTTRP00000010685/1-1263 ALGEKHPEFK DDIYVPYAQW LAENDRFEEA QKAFHKAGRQ GEAVRVLEQL
BACU015190/1-1285 ALGEKHPEFK DDIYVPYAQW LAESDRFEEA QKAFHKAGRQ GEAVRVLEQL
1001 1050
ENSP00000296266/1-1292 TNNAVAESRF NDAAYYYWML SMQCLDIAQD PAQKDTMLGK FYHFQRLAEL
ENSBTAP00000036344/1-1241 THNAVVESRF SDAAYYYWML SMQCLDIAQD PAQKEVMLSK FHHFQHLAEL
bmy_00403T0/1-1110 THNAVVESRF NDAAYYYWML SMQCLDIAQD PAQKDVMLGK FHHFQHLAEL
ENSTTRP00000010685/1-1263 THNAVVESRF NDAAYYYWML SMQCLDIAQD PAQKDVMLGK FHHFQHLAEL
BACU015190/1-1285 THNAVVESRF NDAAYYYWML SMQCLDIAQD PAQKDVMLGK FHHFQHLAEL
1051 1100
ENSP00000296266/1-1292 YHGYHAIHRH TEDPFSVHRP ETLFNISRFL LHSLPKDTPS GISKVKILFT
ENSBTAP00000036344/1-1241 YHGYHVIHRY VEEPFSFHLP ETLFNISRFL LHSLTKDTPL GISKVNTLFT
bmy_00403T0/1-1110 YHGYHAIQRY TEEPFSFHLP ETLFNISRFL LHSLTKDTPL GISKVNTLFT
ENSTTRP00000010685/1-1263 YHGYHAIQRY TEEPFSFHLP ETLFNISRFL LHSLTKDTPL GISKVNTLFT
BACU015190/1-1285 YHGYHAIQRY TEEPFSFHLP ETLFNISRFL LHSLTKDTPL GISKVNTLFT
1101 1150
ENSP00000296266/1-1292 LAKQSKALGA YRLARHAYDK LRGLYIPARF QKSIELGTLT IRAKPFHDSE
ENSBTAP00000036344/1-1241 LAKQSKALGA YKLARHAYDK LQGLQIPARF QKSIELGSLT IRSKPFHDSE
bmy_00403T0/1-1110 LAKQSKALGA YKLARHAYDK LQGLQTPARF QKSIELGSLT IRSKPFHDSE
ENSTTRP00000010685/1-1263 LAKQSKALGA YKLARHAYDK LQGLQTPARF QKSIELGSLT IRSKPFQDSE
BACU015190/1-1285 LAKQSKALGA YKLARHAYDK LQGLQTPARF QKSIELGSLT IRSKPFHDSE
1151 1200
ENSP00000296266/1-1292 ELVPLCYRCS TNNPLLNNLG NVCINCRQPF IFSASSYDVL HLVEFYLEEG
ENSBTAP00000036344/1-1241 ELVPLCYRCS TNNPLLNNLG NVCINCRQPF VFSASSYEVL HLVEFYLEEG
bmy_00403T0/1-1110 ELVPLCYRCS TNNPLLNNLG NVCINCRQPF VFSASSYEVL HLVEFYLEEG
ENSTTRP00000010685/1-1263 ELVPLCYRCS TNNPLLNNLG NVCINCRQPF VFSASSYEVL HLVEFYLEEG
BACU015190/1-1285 ELVPLCYRCS TNNPLLNNLG NVCINCRQPF VFSASSYEVL HLVEFYLEAG
1201 1250
ENSP00000296266/1-1292 ITDEEAISLI DLEVLRPKRD DRQLEIANNS SQILRLVETK DSIGDEDPFT
ENSBTAP00000036344/1-1241 ITDEEAVSLI DLEAPRLKRE NKWQEITSNN AQTLRLDESM DSVGDDDPFT
bmy_00403T0/1-1110 ITDEEAVSLI DLEAPRHKRE NKWQEIASNS --ILGAGQTL CVSAERRPGS
ENSTTRP00000010685/1-1263 ITDEEAISLI DLEAPRHKRE NKWQEIASNT SQTLRLDETL DSMGDDDPFT
BACU015190/1-1285 ITDEEAVSLI DLEAPRHKRE NKWQEIASNT SQTLRLDETL DSLGDDDPFT
1251 1300
ENSP00000296266/1-1292 AKLSFEQGGS EFVPVVVSRL VLRSMSRRDV LIKRWPPPLR WQYFRSLLPD
ENSBTAP00000036344/1-1241 AKLSFEQGGS EFVPVVVSRS VLRSMSRRDV LIKRWPPPLR WQYFRSLLPD
bmy_00403T0/1-1110 TP-----GGR GLGG------ ---------- ---------- ----------
ENSTTRP00000010685/1-1263 AKLSFEQGGL EFVPVVVNRS VLRSMSRRDV LIKRWPPPLR WQYFRSLLPD
BACU015190/1-1285 AKLSFE-GGL EFGPVVVTRS VLRSMSRRDV LVKRWPPPLR WQYFRSLLPD
1301 1350
ENSP00000296266/1-1292 ASITMCPSCF QMFHSEDYEL LVLQHGCCPY CRRCKDDPGP
ENSBTAP00000036344/1-1241 ASITMCPSCF QMFHSEDYEL LLLQHTCCPY CRRRMDDPSP
bmy_00403T0/1-1110 ---------- ---------- ---------- ----------
ENSTTRP00000010685/1-1263 ASITMCPSCF QMFHSEDYEL LVLQHTCCPY CRRRIDDPSP
BACU015190/1-1285 ASITMCPSCF QMFHSEDYEL LVLQHTCCPY CRRRVDDPSP