KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:46:49 2014 Check: 00 .. Name: ENSP00000340212/1-273 Len: 310 Check: 4268 Weight: 1.00 Name: ENSBTAP00000036364/1-267 Len: 310 Check: 7934 Weight: 1.00 Name: ENSTTRP00000002350/1-272 Len: 310 Check: 300 Weight: 1.00 Name: bmy_10988T0/1-262 Len: 310 Check: 8017 Weight: 1.00 Name: BACU017940/1-188 Len: 310 Check: 5053 Weight: 1.00 // 1 50 ENSP00000340212/1-273 ---------- ---------- ---------- -----MERRE HLTLTFHSPE ENSBTAP00000036364/1-267 ---------- ---------- ---------- -----MEREE QTVFTFYYPE ENSTTRP00000002350/1-272 ---------- ---------- ---------- -----METKE QLTFTFYCPK bmy_10988T0/1-262 MGSMPRFPTP LDSVRVYEDM LRQVPWQLER DLAAKMEGKE QLIFTFYYPK BACU017940/1-188 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000340212/1-273 VPKIKGNRKY QRPTVPAKKH PSASMSCQRQ QQLMDQAHIY IRTLCGSLCS ENSBTAP00000036364/1-267 VPKVKGDRRY RRPTLPT-QH PSALMPPQRR QQHVDQTHTY IRMFCGSLCG ENSTTRP00000002350/1-272 VPKVKGYRKY QRPTLPTNQH PGASMPPQRL QQHVDQTHAY IRMFCGSLCG bmy_10988T0/1-262 VAKVKGYRKY QRPTLPTNQH PSASMPPQRL QQHVDQTHTY IRMFCGSLCG BACU017940/1-188 ---------- ---------- ----MPPQRL QQHVDQTHTY IRMFCGSLCG 101 150 ENSP00000340212/1-273 FSLLMLIAMS PLNWVQFLVI KNGLELYAGL WTLCNHELCW SHTPKPPYYL ENSBTAP00000036364/1-267 FSLLVLICMS PLNWVQFLVI NDGLELYAGL WIPCNHELCW SHTPKPPYYL ENSTTRP00000002350/1-272 FSLLTLICMS PLNWVQFLVI NDGLELYAGL WISCNHELCW SHTPKPPYYL bmy_10988T0/1-262 FSLLMLICVS PLNWVQFLVM NNGLELYAGL WISCNHELCW SHTPKPPYYL BACU017940/1-188 FSLLMLICVS PLNWVQFLVI NNGLELYAGL WISCNHELCW NHTPKPPYYL 151 200 ENSP00000340212/1-273 QYSRAFFLIS VFTILTGLGW LFSSWILNRG SMTTNLDLKV SMLSFIS--A ENSBTAP00000036364/1-267 QYSRAFFLIS VFTILVVLGW LFSSCLPRRG RVTGNLDLKV SMLSFISVLA ENSTTRP00000002350/1-272 QYSRAFFLIS VLTILVALGW LFRACLPRRG RMTPNLDLKV SMLSFIS--A bmy_10988T0/1-262 QYSRAFFLIS VLTILVGLGW LFRSCLPRRG RMTPNLDLKV SMLSFIS--- BACU017940/1-188 QYSRALFLIS VLTILVALGW LFRSCLPRRG RMTPNLDLKV SMLSFIS--- 201 250 ENSP00000340212/1-273 TCLLLCLNLF VAQVHWHTRD AMESDLLWTY YLNWCSDIFY MFAGIISLLN ENSBTAP00000036364/1-267 SCLLLCLILF LEQVDLYTSE TVDSALLWPY QVNWGSDFIY LFAGIVSFLN ENSTTRP00000002350/1-272 SCLLLCLILF LAQVHWHSRD AMESDLLWTY HINWGSDFLY MFAGIISFLN bmy_10988T0/1-262 ---------- ---------- ---------- ---------- ---GIISFLN BACU017940/1-188 ---------- ---------- ---------- ---------- ---GIISFLN 251 300 ENSP00000340212/1-273 YLTSRSPACD ENVTVIPTER SRLGVGPVTT VSPAKDEGPR SEMESLSVRE ENSBTAP00000036364/1-267 YITSRSPSLD QDITAVPTEK SRLGFGPVT- -LPVEDALSE LLTESSSE-- ENSTTRP00000002350/1-272 HITSRSPPLD QNVTAVPIDK SRLGIGPVTT VPPAEDAESG FQTESTSEKE bmy_10988T0/1-262 HITSRSPPLD QNVTAVPIDK SRLGIGPVTT VLPAEDAGSG SQTESTXEKE BACU017940/1-188 HITSRSPPLD QNVTAVPIDK SRLGIGPVTT VSPAEDAGSG SQTESTSEKE 301 350 ENSP00000340212/1-273 KNLPKSGLWW ENSBTAP00000036364/1-267 --ISQTHQI- ENSTTRP00000002350/1-272 KKLSSTELW- bmy_10988T0/1-262 KKLSSTEL-- BACU017940/1-188 KKLSSTEL--