KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:46:52 2014 Check: 00 .. Name: ENSP00000339730/1-961 Len: 962 Check: 4305 Weight: 1.00 Name: ENSBTAP00000036460/1-961 Len: 962 Check: 5514 Weight: 1.00 Name: ENSTTRP00000001663/1-948 Len: 962 Check: 5873 Weight: 1.00 Name: bmy_17770T0/1-495 Len: 962 Check: 9720 Weight: 1.00 Name: BACU008207/1-961 Len: 962 Check: 6828 Weight: 1.00 // 1 50 ENSP00000339730/1-961 MLAPRGAAVL LLHLVLQRWL AAGAQATPQV FDLLPSSSQR LNPGALLPVL ENSBTAP00000036460/1-961 MLAPRGATFL LLHLALQPWL GAGAQATPQV FDLLPSASQR LNPSVLQPIL ENSTTRP00000001663/1-948 ---------- ----ALQPWL GAGAQTTPQX XXXXXXXXXX XXXXXXXXXX bmy_17770T0/1-495 ---------- ---------- ---------- ---------- ---------- BACU008207/1-961 MLAPRGAALL LLHLALQPWL GSGAQATPQV FDLLPSASQR LNPGVLQPVL 51 100 ENSP00000339730/1-961 TDPALNDLYV ISTFKLQTKS SATIFGLYSS TDNSKYFEFT VMGRLNKAIL ENSBTAP00000036460/1-961 TDPTLNELYV ISTFKLQSKS SATIFGLYSS ADHSKYFEFT VMGRLNKAIL ENSTTRP00000001663/1-948 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXKYFEFT VMGRLNKAIL bmy_17770T0/1-495 ---------- ---------- ---------- ---------- ---------- BACU008207/1-961 TDPTLKELYV ISTFKLQTKS SATIFGLYSS ADNSKYFEFT VMGRLNKAIL 101 150 ENSP00000339730/1-961 RYLKNDGKVH LVVFNNLQLA DGRRHRILLR LSNLQRGAGS LELYLDCIQV ENSBTAP00000036460/1-961 RYLKNDGRIH LVVFNNLQLA DGRRHRLLLR LTNLHRGAGS VELFLDCTRV ENSTTRP00000001663/1-948 RYLKNDGKIH LVVFNNLQLA DGRRHRVLLR LNNLHRGAGS VELYVDCSQV bmy_17770T0/1-495 ---------- ---------- ---------- ---------- ---------- BACU008207/1-961 RYLKNDGKIH LVVFNNLQLA DGRRHRVLLR LTNLHRGAGS VELYVDCSQV 151 200 ENSP00000339730/1-961 DSVHNLPRAF AGPSQKPETI ELRTFQRKPQ DFLEELKLVV RGSLFQVASL ENSBTAP00000036460/1-961 DSIHNLPRAF SGLAQSPEAV ELRTFQRKAH DSLEELKLVV RGSLIQVASL ENSTTRP00000001663/1-948 DSIHNLPRAF SGLAQSPEAV ELRTFQRKAQ DSLEELKLAV RGSLFQVASL bmy_17770T0/1-495 ---------- ---------- ---------- ---------- ---------- BACU008207/1-961 DSIHNLPRAF SGLAQSPEAV ELRTFRRKAQ DSLEELKLAV RGSLFQVASL 201 250 ENSP00000339730/1-961 QDCFLQQSEP LAATGTGDFN RQFLGQMTQL NQLLGEVKDL LRQQVKETSF ENSBTAP00000036460/1-961 QDCFLQQSEP LATTNTGDFN RQFLGQMSQL NQLLGEVKDL LRQQVKETSF ENSTTRP00000001663/1-948 QDCFLQQSEP LATTSTGDFN RQFLGQMSQL NQLLGEVKDL LRQQVKETSF bmy_17770T0/1-495 ---------- ---------- ---------- ---------- ---------- BACU008207/1-961 QDCFLQQSEP LAATSTGDFN RQFLGQMSQL NQLLGEVKDL LRQQVKETSF 251 300 ENSP00000339730/1-961 LRNTIAECQA CGPLKFQSPT P-STVVPPAP PAPPTRPPRR CDSNPCFRGV ENSBTAP00000036460/1-961 LRNTIAECQA CGPLSFQSPT P-NTLMPVVP AASPTPPVRR CDSNPCFRGV ENSTTRP00000001663/1-948 LRNTIAECQA CGPLSFQSPT PSNTVVPPVL PASLIPPVRR CDSNPCFRGV bmy_17770T0/1-495 ---------- ---------- ---------- ---------- ---------- BACU008207/1-961 LRNTIAECQA CGPLSFQSPT P-NTVVPPVL PASPTPPVRR CNSNPCFRGV 301 350 ENSP00000339730/1-961 QCTDSRDGFQ CGPCPEGYTG NGITCIDVDE CKYHPCYPGV HCINLSPGFR ENSBTAP00000036460/1-961 RCTDTRDGFQ CGPCPEGYTG NGIVCSDVDE CRYHPCYPGV RCVNLAPGFR ENSTTRP00000001663/1-948 RCTNTRDGFH CGPCPEGYTG NGITCSDVDE CKYHPCYPGV RCVNLAPGFR bmy_17770T0/1-495 ---------- ---------- ---------- ---------- ---------- BACU008207/1-961 RCTNTRDGFH CGPCPEGYTG NGITCSDVDE CKYHPCYPGV RCVNLVPGFR 351 400 ENSP00000339730/1-961 CDACPVGFTG PMVQGVGISF AKSNKQVCTD IDECRNGACV PNSICVNTLG ENSBTAP00000036460/1-961 CDACPVGFTG PMMQGVGISF AKTNKQVCTD IDECRNGACV LNSICINTLG ENSTTRP00000001663/1-948 CDTCPVGFTG STVQGVGINF AKTNKQXXXX XXXXXXXXXX XXXXXXXXXG bmy_17770T0/1-495 ---------- ---------- ---------- ---------- ---------- BACU008207/1-961 CDACPVGFTG PMVQGVGINF AKTNKQVCTD IDECRNGACV LNSICVNTLG 401 450 ENSP00000339730/1-961 SYRCGPCKPG YTGDQIRGCK AERNCRNPEL NPCSVNAQCI EERQGDVTCV ENSBTAP00000036460/1-961 SYRCGPCKPG YIGDQMRGCK MERNCRDPEL NPCSVNAQCI EERQGDVTCV ENSTTRP00000001663/1-948 SYRCGPCKPG YIGDQTRGCK MERNCRNPEL NPCSVNAQCI EERQGDVTCV bmy_17770T0/1-495 ---------- ---------- MERSCRNPEL NPCSVNAQCI EERQGDVTCV BACU008207/1-961 SYRCGPCKPG YIGDQTRGCK MERSCRNPEL NPCSVNAQCI EERQGDVTCV 451 500 ENSP00000339730/1-961 CGVGWAGDGY ICGKDVDIDS YPDEELPCSA RNCKKDNCKY VPNSGQEDAD ENSBTAP00000036460/1-961 CGVGWAGDGY ICGKDVDIDS YPDEELPCSA RNCKKDNCKY VPNSGQEDAD ENSTTRP00000001663/1-948 CGVGWAGDGY ICGKDVDIDS YPDEELLCSA SNCKKDNCKY VPNSGQEDAD bmy_17770T0/1-495 CRVGWAGDGY ICGKDLDIDS YPDEELLCSA RNCKK----- ---------- BACU008207/1-961 CGVGWAGDGY ICGKDLDIDS YPDEELLCSA RNCKKDNCKY VPNSGQEDAD 501 550 ENSP00000339730/1-961 RDGIGDACDE DADGDGILNE QDNCVLIHNV DQRNSDKDIF GDACDNCLSV ENSBTAP00000036460/1-961 RDGIGDACDD DADGDGILNE QDNCVLTHNV DQRNSDKDIF GDACDNCRNV ENSTTRP00000001663/1-948 GDGLGDACDE DADGDGILNE QDNCVLTHNV DQRNSDKDMF GDACDNCRNV bmy_17770T0/1-495 ---------- ---------- ---------- --RNGDKDIF GDACDNCRNV BACU008207/1-961 GDGLGDACDE DADGDGILNE QDNCVLTHNV DQRNGDKDIF GDACDNCRNV 551 600 ENSP00000339730/1-961 LNNDQKDTDG DGRGDACDDD MDGDGIKNIL DNCPKFPNRD QRDKDGDGVG ENSBTAP00000036460/1-961 LNNDQKDTDG DGKGDACDDD MDGDGIKNIL DNCQKVPNSD QEDRDGDGVG ENSTTRP00000001663/1-948 LNNDQKDTDG DGKGDACDDD MDGDGIKNIL DNCQKVPNRD QQDKDGDGVG bmy_17770T0/1-495 LNNDQKDTDG DGKGDACDDD MDGDGIKNFL DNCQKVPNRD QQDKDGDGVG BACU008207/1-961 LNNDQKDTDG DGKGDACDDD MDGDGIKNFL DNCQKVPNHD QQDKDGDGVG 601 650 ENSP00000339730/1-961 DACDSCPDVS NPNQSDVDND LVGDSCDTNQ DSDGDGHQDS TDNCPTVINS ENSBTAP00000036460/1-961 DACDSCPEVS NPNQSDVDND LVGDSCDTNQ DSDGDGHQDS TDNCPTVINS ENSTTRP00000001663/1-948 DACDSCPDVS NPNQSDVDND LVGDSCDTNQ DSDGDGHQDS TDNCPTVINS bmy_17770T0/1-495 DACDSCPYVS NPNQSDVDND LVGDSCDTNQ DSDGDGHQDS TDNCPTVINS BACU008207/1-961 DACDSCPDVS NPNQSDVDND LVGDSCDTNQ DSDGDGHQDS TDNCPTVINS 651 700 ENSP00000339730/1-961 AQLDTDKDGI GDECDDDDDN DGIPDLVPPG PDNCRLVPNP AQEDSNSDGV ENSBTAP00000036460/1-961 AQLDTDKDGI GDECDDDDDN DGIPDLVPPG PDNCRLVPNP AQEDSNSDGV ENSTTRP00000001663/1-948 AQLDTDKDGI GDECDDDDDN DGIPDLVPPG PDNCRLVPNP AQEDSNSDGV bmy_17770T0/1-495 AQLDTDKDGI GDECDDDDDN DGIPDLVPPG PDNCRLVPNP AQEDSNSDGV BACU008207/1-961 AQLDTDKDGI GDECDDDDDN DGIPDLVPPG PDNCRLVPNP AQEDSNSDGV 701 750 ENSP00000339730/1-961 GDICESDFDQ DQVIDRIDVC PENAEVTLTD FRAYQTVVLD PEGDAQIDPN ENSBTAP00000036460/1-961 GDICEADFDQ DQVIDRIDVC PENAEVTLTD FRAYQTVVLD PEGDAQIDPN ENSTTRP00000001663/1-948 GDICETDFDH DQVIDRIDVC PENAEVTLTD FRAYQTVVLD PEGDAQIDPN bmy_17770T0/1-495 GDICETDFDH DQVIDRIDVC PENAEVTLTD FRAYQTVVLD PEGDAQIDPN BACU008207/1-961 GDICETDFDH DHVIDRIDVC PENAEVTLTD FRAYQTVVLD PEGDAQIDPN 751 800 ENSP00000339730/1-961 WVVLNQGMEI VQTMNSDPGL AVGYTAFNGV DFEGTFHVNT QTDDDYAGFI ENSBTAP00000036460/1-961 WVVLNQGMEI VQTMNSDPGL AVGYTAFNGV DFEGTFHVNT QTDDDYAGFI ENSTTRP00000001663/1-948 WVVLNKGMEI VQTMNSDPGL AVGYTAFNGV DFEGTFHVNT QTDDDYAGFI bmy_17770T0/1-495 WVVLNQGMEI VQTMNSDPGL AVGYTAFNGV DFEGTFHVNT QTDDDYAGFI BACU008207/1-961 WVVLNQGMEI VQTMNSDPGL AVGYTAFNGV DFEGTFHVNT QTDDDYAGFI 801 850 ENSP00000339730/1-961 FGYQDSSSFY VVMWKQTEQT YWQATPFRAV AEPGIQLKAV KSKTGPGEHL ENSBTAP00000036460/1-961 FGYQDSSSFY VVMWKQTEQT YWQATPFRAV AEPGIQLKAV KSKTGPGEHL ENSTTRP00000001663/1-948 FGYQDSSSFY VVMWKQTEQT YWQATPFRAV AEPGIQLKAV KSKTGPGEHL bmy_17770T0/1-495 FGYQDSSSFY VVMWKQTEQT YWQATPFRAV AEPGIQLKAV KSKTGPGEHL BACU008207/1-961 FGYQDSSSFY VVMWKQTEQT YWQATPFRAV AEPGIQLKAV KSKTGPGEHL 851 900 ENSP00000339730/1-961 RNSLWHTGDT SDQVRLLWKD SRNVGWKDKV SYRWFLQHRP QVGYIRVRFY ENSBTAP00000036460/1-961 RNSLWHTGDT SDQVRLLWKD SRNVGWKDKV SYRWFLQHRP QVGYIRVRFY ENSTTRP00000001663/1-948 RNSLWHTGDT SDQVRLLWKD SRNVGWKDKV SYRWFLQHRP QVGYIRVQFY bmy_17770T0/1-495 RNSLWHTGDT SDQVRLLWKD SRNVGWKDKV SYRWFLQHRP QVGYIRVQFY BACU008207/1-961 RNSLWHTGDT SDQVRLLWKD TRNVGWKDKV SYRWFLQHRP QVGYIRVQFY 901 950 ENSP00000339730/1-961 EGSELVADSG VTIDTTMRGG RLGVFCFSQE NIIWSNLKYR CNDTIPEDFQ ENSBTAP00000036460/1-961 EGSELVADSG VTIDTTMRGG RLGVFCFSQE NIIWSNLKYR CNDTIPEDFQ ENSTTRP00000001663/1-948 EGSELVADSG VTIDTTMRGG RLGVFCFSQE NIIWSNLKYR CNDTIPEDFQ bmy_17770T0/1-495 EGSELVADSG VTIDTTMRGG RLGVFCFSQE NIIWSNLKYR CNDTIPEDFQ BACU008207/1-961 EGSELVADSG VTIDTTMRGG RLGVFCFSQE NIIWSNLKYR CNDTIPEDFQ 951 1000 ENSP00000339730/1-961 EFQTQNFDRF DN ENSBTAP00000036460/1-961 EFQTQNFDRL DK ENSTTRP00000001663/1-948 EFQTQNFDRL DN bmy_17770T0/1-495 EFQTQNFDRL DN BACU008207/1-961 EFQTQNFDRL DN