KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:46:53 2014 Check: 00 .. Name: ENSTTRP00000012296/1-861 Len: 872 Check: 5016 Weight: 1.00 Name: BACU020024/1-862 Len: 872 Check: 6323 Weight: 1.00 Name: ENSBTAP00000036467/1-866 Len: 872 Check: 3674 Weight: 1.00 Name: ENSP00000255189/1-866 Len: 872 Check: 1970 Weight: 1.00 Name: bmy_16201T0/1-654 Len: 872 Check: 9764 Weight: 1.00 // 1 50 ENSTTRP00000012296/1-861 MFCLGA---- -LRLRGFPLR GSPGRLLSVC GREGEENPPS PAETRWKDRA BACU020024/1-862 MFRSGA---- -LRLRGFPLR GSLGRLRSVC GREGEENPPL RAETRWKDRA ENSBTAP00000036467/1-866 MLRPGIRRLR GLRLLGFPPR GSPGCPRSVC SRQGEENPPL SAESRWKDRA ENSP00000255189/1-866 MLRPGAQLLR GLLLRSCPLQ GSPGRPRSVC GREGEEKPPL SAETQWKDRA bmy_16201T0/1-654 ---------- ---------- ---------- MSSREENPPL PAETRWKDRA 51 100 ENSTTRP00000012296/1-861 ETVIIGGGCV GVSLAYHLAK AGMKDVVLLE KSELTAGSTW HAAGLTTYFH BACU020024/1-862 ETVIIGGGCV GVSLAYHLAK AGMKDVVLLE KSELTAGSTW HAAGLTTYFH ENSBTAP00000036467/1-866 ETVIIGGGCV GVSLAYHLAK AGMKDVVLLE KSELTAGSTW HAAGLTTYFH ENSP00000255189/1-866 ETVIIGGGCV GVSLAYHLAK AGMKDVVLLE KSELTAGSTW HAAGLTTYFH bmy_16201T0/1-654 ETVIIGGGCV GVSLAYHLAK AGMKDVVLLE KSELTAGSTW HAAGLTTYFH 101 150 ENSTTRP00000012296/1-861 PGINLKKIHY DSIKLYEKLE EETGQVVGFH QPGSIRIATT PVRVDEFKYQ BACU020024/1-862 PGINLKKIHY DSIKLYEKLE EETGQVVGFH QPGSIRIATT PVRVDEFKYQ ENSBTAP00000036467/1-866 PGINLKKIHY YSIKLYEKLE EETGQVVGFH QPGSIRIATT PVRVDEFKYQ ENSP00000255189/1-866 PGINLKKIHY DSIKLYEKLE EETGQVVGFH QPGSIRLATT PVRVDEFKYQ bmy_16201T0/1-654 PGINLKKIHY DSIKLYEKLE EETGQVVGFH QPGSIRIATT PVRVDEFKYQ 151 200 ENSTTRP00000012296/1-861 MTRTGWHATE QYIIEPEKIQ EMFPLLNMNK ILAGLYNPGD GHIDPYSLTM BACU020024/1-862 MTRTGWHATE QYIIEPEKIQ EMFPLLNMNK ILAGLYNPGD GHIDPYSLTM ENSBTAP00000036467/1-866 MTRTRWHATE QYIIEPEKIQ EMFPLLNMNK ILAGLYNPGD GHIDPYSLTM ENSP00000255189/1-866 MTRTGWHATE QYLIEPEKIQ EMFPLLNMNK VLAGLYNPGD GHIDPYSLTM bmy_16201T0/1-654 MTRTGWHATE QYLIEPEKIQ EMFPLLNMNK ILAGLYNPGD GHIDPYSLTM 201 250 ENSTTRP00000012296/1-861 ALAAGARKYG ALLKYPAPVT SLKPKSDGTW DVETPQGSMR ANRIVNAAGF BACU020024/1-862 ALAAGARKYG ALLKYPAPVT SLKPKSDGTW DVETPQGSMR ANRIVNAAGF ENSBTAP00000036467/1-866 ALAAGARKYG ALLKYPAPVT SLKPRSDGTW DVETPHGSMR ANRIVNAAGF ENSP00000255189/1-866 ALAAGARKCG ALLKYPAPVT SLKARSDGTW DVETPQGSMR ANRIVNAAGF bmy_16201T0/1-654 ALAAGARKYG ALLKYPAPVT SLKPKSDGTW DVETPQGSMR ANRIVNAAGF 251 300 ENSTTRP00000012296/1-861 WAREVGKMIG LEHPLIPVQH QYVVTSTIPE VKALKRELPV LRDLEGSYYL BACU020024/1-862 WAREVGKMVG LEHPLIPVQH QYVVTSTIPE VKALKRELPV LRDLEGSYYL ENSBTAP00000036467/1-866 WAREVGKMIG LEHPLIPVQH QYIITSTIPE VKALKRELPV LRDLEGSFYL ENSP00000255189/1-866 WAREVGKMIG LEHPLIPVQH QYVVTSTISE VKALKRELPV LRDLEGSYYL bmy_16201T0/1-654 WAREVGKMIG LEHPLIPVQH QYVVTSTIPE VKALKRELPV LRDLEGSYYL 301 350 ENSTTRP00000012296/1-861 RQERDGLLFG PYESQEKMKV QDSWVTNGVP PX------XX XXXXXXXXXX BACU020024/1-862 RQERDGLLFG PYESQEKMKV QDSWVTSGVP PEGPRVQHFS IVCYSSPTSR ENSBTAP00000036467/1-866 RQERDGLLFG PYESQEKMKV QDSWVTSGVP PG------FG KELFESDLDR ENSP00000255189/1-866 RQERDGLLFG PYESQEKMKV QDSWVTNGVP PG------FG KELFESDLDR bmy_16201T0/1-654 RQERDGLLFG PYESQEKMKV QDSWVTSGVP PG------FG KELFESDLDR 351 400 ENSTTRP00000012296/1-861 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU020024/1-862 ENRYLQTVYI YASAHLPYSQ NTLSQSCFTF IPDLIS---- -SSASRVFIS ENSBTAP00000036467/1-866 IMEHVEAAMD LVPVLKKADI IRIVNGPITY SPDILPMVGP HQGVRNYWVA ENSP00000255189/1-866 IMEHIKAAME MVPVLKKADI INVVNGPITY SPDILPMVGP HQGVRNYWVA bmy_16201T0/1-654 IMEHVEAAME MVPVLKKADI INIVNGPITY SPDILPMVGP HQGVRNYWVA 401 450 ENSTTRP00000012296/1-861 XXXXYGIIHA GGVGKYLSDW ILHGEPPFDL IELDPNRYGK WTTTQYTEAK BACU020024/1-862 VFERYGIIHA GGVGKYLSDW ILHGEPPFDL IELDPNRYGK WTTTQYTEAK ENSBTAP00000036467/1-866 VGFGYGIIHA GGVGKYLSDW ILHREPPFDL IELDPNRYGK WTTAEYTEAK ENSP00000255189/1-866 IGFGYGIIHA GGVGKYLSDW ILHGEPPFDL IELDPNRYGK WTTTQYTEAK bmy_16201T0/1-654 IGFGYGIIHA GGVGKYLSDW ILHGEPPFDL IELDPNRYGK WTTTQYTEAK 451 500 ENSTTRP00000012296/1-861 ARESYGFNNI VGYPKEERFA GRPTQRVSGL YKTLESKCSM GFHAGWEQPH BACU020024/1-862 ARESYGFNNI VGYPKEERFA GRPTQRVSGL YKTLESKCSM GFHAGWEQPH ENSBTAP00000036467/1-866 ARESYGFNNI VGYPKEERFA GRPTQRVSGL YETLESKCSM GFHSGWEQPH ENSP00000255189/1-866 ARESYGFNNI VGYPKEERFA GRPTQRVSGL YQRLESKCSM GFHAGWEQPH bmy_16201T0/1-654 ARESYGFNNI VGYPKEERFA GRPTQRVSGL YKTLESKCSM GFHAGWEQPH 501 550 ENSTTRP00000012296/1-861 WFYQPGQDTG YRPSFRRTNW FDPVGSEYKQ VMQRVGVIDL SPFGKFNIKG BACU020024/1-862 WFYKPGQDTG YRPSFHRTNW FDPVGSEYKQ VMQRVGVIDL SPFGKFNIKG ENSBTAP00000036467/1-866 WFYKPGQDPG YRPSFHRTNW FEPVGSEYQQ VMQRVGVIDL SPFGKFNIKG ENSP00000255189/1-866 WFYKPGQDTQ YRPSFRRTNW FEPVGSEYKQ VMQRVAVTDL SPFGKFNIKG bmy_16201T0/1-654 WFYKPGQDTG YRPSFHRTNW FDPVGSEYKQ VMQRVGVIDL SPFGKFNIKG 551 600 ENSTTRP00000012296/1-861 QDSIRLLDHL FANVIPKVGF TNISHMLTPK GQVYAELTVS HQSPGEFLLI BACU020024/1-862 QDSIRLLDHL FANVIPKVGF TNISHMLTPK GQVYAELTVS HQSPGEFLLI ENSBTAP00000036467/1-866 QDSIRLLDHL FANVIPKVGF TNISHMLTPK GRVYAELTVS HQSPGEFLLV ENSP00000255189/1-866 QDSIRLLDHL FANVIPKVGF TNISHMLTPK GRVYAELTVS HQSPGEFLLI bmy_16201T0/1-654 QDSIRLLDHL FANVIPKVGF TNISHMLTPK GQVYAELTVS HQSPGEFLLI 601 650 ENSTTRP00000012296/1-861 TGSGSELHDL RWIEEEAVKG GYDVEIKNIT DELGVLGIAG PHARKVLQKL BACU020024/1-862 TGSGSELHDL RWIEEEAVKG GYDVEIKNIT DELGVLGVAG PHARKVLQKL ENSBTAP00000036467/1-866 TGSGSELHDL RWIEEEAIKG GYDVEIKNIT DELGVLGVAG PYSRKVLQKL ENSP00000255189/1-866 TGSGSELHDL RWIEEEAVKG GYDVEIKNIT DELGVLGVAG PQARKVLQKL bmy_16201T0/1-654 TGSGSELHDL RWIEEEAVKG GYDVEIKNIT DELGVLGVAG PHARKVLQKL 651 700 ENSTTRP00000012296/1-861 TSEDLSDGVF KFLQTKSLKV SNIPVTAIRI SYTXXXXXXX XXXXXXXXXX BACU020024/1-862 TSEDLSDDIF KFLQTKSLKV SNIPVTAIRI SYTGELGWEL YHRREDSAAL ENSBTAP00000036467/1-866 TSEDLSDNVF KFLQTKSLKV SNIPVTAIRI SYTGELGWEL YHRREDSAAL ENSP00000255189/1-866 TSEDLSDDVF KFLQTKSLKV SNIPVTAIRI SYTGELGWEL YHRREDSVAL bmy_16201T0/1-654 TSEDLSDDIF KFLQTKSLKV SNIPVTAIRI SYTG------ ---------- 701 750 ENSTTRP00000012296/1-861 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXMNCD TNPLEAGLGY BACU020024/1-862 YDIIMNAGQK EGIDNFGTYA MNALRLEKAF RAWGSEMNCD TNPLEAGLQY ENSBTAP00000036467/1-866 YDAIMNAGQE EGIDNFGTYA MNALRLEKAF RAWGSEMNCD TNPLEAGLES ENSP00000255189/1-866 YDAIMNAGQE EGIDNFGTYA MNALRLEKAF RAWGLEMNCD TNPLEAGLEY bmy_16201T0/1-654 ---------- ---------- ---------- KNWKTT---- ---------- 751 800 ENSTTRP00000012296/1-861 FVKLNKPADF IGKQALKQIK AKGLKRRLVC LTLATDDVDP EGNESIWYGG BACU020024/1-862 FVKLNKPADF IGKQALKQIK AKGLKRRLVC LTLATDDVDP EGNESIWYDG ENSBTAP00000036467/1-866 FVKLNKPADF IGKQALKQIK AKGLKRRLVC LTLATDDVDP EGNESIWYDG ENSP00000255189/1-866 FVKLNKPADF IGKQALKQIK AKGLKRRLVC LTLATDDVDP EGNESIWYNG bmy_16201T0/1-654 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000012296/1-861 KVVGNTTSGS YSYSIQKSLA FAYVPVELSK VGQQVEVELL GKNYSATVIQ BACU020024/1-862 KVVGNTTSGS YSYSIQKSLA FAYIPVELSK VGQQVEVELL GKNYSATVIK ENSBTAP00000036467/1-866 KVVGNTTSGS YSYRIQKSLV FAYVPVELSK VGQQVEVELL GKNYPAVVIQ ENSP00000255189/1-866 KVVGNTTSGS YSYSIQKSLA FAYVPVQLSE VGQQVEVELL GKNYPAVIIQ bmy_16201T0/1-654 ---------- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000012296/1-861 EPLVLTEPIR NKLQKKGGKD KI BACU020024/1-862 EPLVLTEPIR NQLLKKGGKD KI ENSBTAP00000036467/1-866 EPLVLTEPTR SRLQKKRWKG QN ENSP00000255189/1-866 EPLVLTEPTR NRLQKKGGKD KT bmy_16201T0/1-654 ---------- ---------- --