KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:46:59 2014 Check: 00 .. Name: BACU012891/1-853 Len: 913 Check: 2469 Weight: 1.00 Name: ENSTTRP00000000217/1-901 Len: 913 Check: 2901 Weight: 1.00 Name: bmy_15025T0/1-855 Len: 913 Check: 7302 Weight: 1.00 Name: ENSP00000274140/1-910 Len: 913 Check: 1165 Weight: 1.00 Name: ENSBTAP00000036510/1-910 Len: 913 Check: 1455 Weight: 1.00 // 1 50 BACU012891/1-853 MLVEGDVATL VRVS-----P AASLAASLCA VSCLR----D TPCRALATAP ENSTTRP00000000217/1-901 ---------I CRVCRSEGTP EKPLYHP-VC TGSIKFIHQE XXXXXXXXXX bmy_15025T0/1-855 NSIFFSLIDI CRVCRSEGTP EKPLYHPCVC TGSIKFIHQE CLVQWLKHSR ENSP00000274140/1-910 --MDTAEEDI CRVCRSEGTP EKPLYHPCVC TGSIKFIHQE CLVQWLKHSR ENSBTAP00000036510/1-910 --LLFSLIDI CRVCRSEGTP EKPLYHPCVC TGSIKFIHQE CLVQWLKHSR 51 100 BACU012891/1-853 YSRLSQLPES WPGRQVYSPD MPSRLPIQDI FAGLVTSIGT AIRYWFHYTL ENSTTRP00000000217/1-901 XXXXXXXXXX XXXXXXYSPD MPSRLPIQDI FAGLVTSIGT AIRYWFHYTL bmy_15025T0/1-855 KEYCELCKHR FAFTPIYSPD MPSRLPIQDI FAGLVTSIGT AIRYWFHYTL ENSP00000274140/1-910 KEYCELCKHR FAFTPIYSPD MPSRLPIQDI FAGLVTSIGT AIRYWFHYTL ENSBTAP00000036510/1-910 KEYCELCKHR FAFTPIYSPD MPSRLPIQDI FAGLVTSIGT AIRYWFHYTL 101 150 BACU012891/1-853 VAFAWLGVVP LTACRIYKCL FTGSVSSLLT LPLDMLSTDN LLADCLQGCF ENSTTRP00000000217/1-901 VAFAWLGVVP LTACRIYKCL FTGSVSSLLT LPLDMLSTDN LLADCLQGCF bmy_15025T0/1-855 VAFAWLGVVP LTACRIYKCL FTGSVSSLLT LPLDMLSTDN LLADCLQGCF ENSP00000274140/1-910 VAFAWLGVVP LTACRIYKCL FTGSVSSLLT LPLDMLSTEN LLADCLQGCF ENSBTAP00000036510/1-910 VAFAWLGVVP LTACRIYKCL FTGSVSSLLT LPLDMLSTDN LLADCLQGCF 151 200 BACU012891/1-853 VVTCTLCAFI SLVWLREQIV HGGAPIWLEH AAPPFNAAGH HQNEAPAGGN ENSTTRP00000000217/1-901 VVTCTLCAFI SLVWLREQIV HGGAPIWLEH AAPPFNAAGH HQNEAPAGGN bmy_15025T0/1-855 VVTCTLCAFI SLVWLREQIV HGGAPIWLEH AAPPFNAAGH HQNEAPAGGN ENSP00000274140/1-910 VVTCTLCAFI SLVWLREQIV HGGAPIWLEH AAPPFNAAGH HQNEAPAGGN ENSBTAP00000036510/1-910 VVTCTLCAFI SLVWLREQIV HGGAPIWLEH AAPPFNAAGH HQNEAPAGGN 201 250 BACU012891/1-853 GAENVAPDQP ANPPAENAVV GENPAAQDDQ AEEEEEENEE EDDAGGEDAA ENSTTRP00000000217/1-901 GAENVAPDQP ANPPAENAVV GENPAAQDDQ AEEEEEENEE EDDAGGEDAA bmy_15025T0/1-855 GAENVAPDQP ANPPAENAVV GENPAAQDDQ AEEEEEENEE EDDAGGEDAA ENSP00000274140/1-910 GAENVAADQP ANPPAENAVV GENPDAQDDQ AEEEEEDNEE EDDAGVEDAA ENSBTAP00000036510/1-910 GAENVAPEQP ANPPAENAVV GENPDAQDEQ AEEEEEENEE EDDAGGEDAA 251 300 BACU012891/1-853 DANNGAQDDM NWNALEWDRA AEELTWERXK DIE------- ---------- ENSTTRP00000000217/1-901 DANNGAQDDM NWNALEWDRA AEELTWERML GLDGSLVFLE HVFWVVSLNT bmy_15025T0/1-855 DANNGAQDDM NWNALEWDRA AEELTWERML GLDGSLVFLE HVFWVVSLNT ENSP00000274140/1-910 DANNGAQDDM NWNALEWDRA AEELTWERML GLDGSLVFLE HVFWVVSLNT ENSBTAP00000036510/1-910 DANNGVQDDM NWNALEWDRA AEELTWERML GLDGSLVFLE HVFWVVSLNT 301 350 BACU012891/1-853 ------AFCP YHIGHFSLVG LGFEEH---- ---------- ---------- ENSTTRP00000000217/1-901 LFILVFAFCP YHIGHFSLVG LGFEEH-VQA SHFEGLITTI VGYILLAITL bmy_15025T0/1-855 LFILVF---- ---GIYETV- --LDSHLVQA SHFEGLITTI VGYILLAITL ENSP00000274140/1-910 LFILVFAFCP YHIGHFSLVG LGFEEH-VQA SHFEGLITTI VGYILLAITL ENSBTAP00000036510/1-910 LFILVFAFCP YHIGHFSLVG LGFEEH-VQA SHFEGLITTI VGYILLAITL 351 400 BACU012891/1-853 ----GLATLV KFHRSRRLLG VCYIVVKVSL LVVVEIGVFP LICGWWLDIC ENSTTRP00000000217/1-901 IICHGLATLV KFHRSRRLLG VCYIVVKVSL LVVVEIGVFP LICGWWLDIC bmy_15025T0/1-855 IICH------ ---------- ---------- ---------- ---------- ENSP00000274140/1-910 IICHGLATLV KFHRSRRLLG VCYIVVKVSL LVVVEIGVFP LICGWWLDIC ENSBTAP00000036510/1-910 IICHGLATLV KFHRSRRLLG VCYIVVKVSL LVVVEIGVFP LICGWWLDIC 401 450 BACU012891/1-853 SLEMFDATLK DRELSFQSAP GTTMFLHWLV GMVYVFYFAS FILLLREVLR ENSTTRP00000000217/1-901 SLEMFDATLK DRELSFQSAP GTTMFLHWLV GMVYVFYFAS FILLLREVLR bmy_15025T0/1-855 --EMFDATLK DRELSFQSAP GTTMFLHWLV GMVYVFYFAS FILLLREVLR ENSP00000274140/1-910 SLEMFDATLK DRELSFQSAP GTTMFLHWLV GMVYVFYFAS FILLLREVLR ENSBTAP00000036510/1-910 SLEMFDATLK DRELSFQSAP GTTMFLHWLV GMVYVFYFAS FILLLREVLR 451 500 BACU012891/1-853 PGVLWFLRNL NDPDFNPVQE MIHLPIYRHL RRFILSVIVF GSIVLLMLWL ENSTTRP00000000217/1-901 PGVLWFLRNL NDPDFNPVQE MIHLPIYRHL RRFILSVIVF GSIVLLMLWL bmy_15025T0/1-855 PGVLWFLRNL NDPDFNPVQE MIHLPIYRHL RRFILSVIVF GSIVLLMLWL ENSP00000274140/1-910 PGVLWFLRNL NDPDFNPVQE MIHLPIYRHL RRFILSVIVF GSIVLLMLWL ENSBTAP00000036510/1-910 PGVLWFLRNL NDPDFNPVQE MIHLPIYRHL RRFILSVIVF GSIVLLMLWL 501 550 BACU012891/1-853 PIRIIKSLLP NFLPYNVMLY SDAPVSELSL ELLLLQVVLP ALLEQGHTRQ ENSTTRP00000000217/1-901 PIRIIKSLLP NFLPYNVMLY SDAPVSELSL ELLLLQVVLP ALLEQGHTRQ bmy_15025T0/1-855 PIRIIKSLLP NFLPYNVMLY SDAPVSELSL ELLLLQVVLP ALLEQGHTRQ ENSP00000274140/1-910 PIRIIKSVLP NFLPYNVMLY SDAPVSELSL ELLLLQVVLP ALLEQGHTRQ ENSBTAP00000036510/1-910 PIRIIKSLLP HFLPYNVMLY SDAPVSELSL ELLLLQVVLP ALLEQGHTRQ 551 600 BACU012891/1-853 WLKGLVRAWT VTAGYLLDLH SYLLGDQEEN ENSANQQANN NQHARNNNAL ENSTTRP00000000217/1-901 WLKGLVRAWT VTAGYLLDLH SYLLGDQEEN ENSANQQANN NQHARNNNAL bmy_15025T0/1-855 WLKGLVRAWT VTAGYLLDLH SYLLGDQEEN ENSANQQANN NQHARNNNAL ENSP00000274140/1-910 WLKGLVRAWT VTAGYLLDLH SYLLGDQEEN ENSANQQVNN NQHARNNNAI ENSBTAP00000036510/1-910 WLKGLVRAWT VTAGYLLDLH SYLLGDQEEN ENSANQQVNN NQHARNNNAI 601 650 BACU012891/1-853 PVVGEGLHAA HQAILQQGGP VGFQPYRRPP HFPLRIFFLI VFMCITLLIA ENSTTRP00000000217/1-901 PVVGEGLHAA HQAILQQGGP VGFQPYRRPP HFPLRIFLLI VFMCITLLIA bmy_15025T0/1-855 PVVGEGLHAA HQAILQQGGP VGFQPYRRPP HFPLRIFLLI VFMCITLLIA ENSP00000274140/1-910 PVVGEGLHAA HQAILQQGGP VGFQPYRRPL NFPLRIFLLI VFMCITLLIA ENSBTAP00000036510/1-910 PVVGEGLHAA HQAILQQGGP VGFQPYRRPL NFPLRIFLLI VFMCITLLIA 651 700 BACU012891/1-853 SLICLTLPVF AGRWLMSFWT GTAKIHELYT AACGLYVCWL TIRAVTVLVA ENSTTRP00000000217/1-901 SLICLTLPVF AGRWLMSFWT GTAKIHELYT AACGLYVCWL TIRAVTVLVA bmy_15025T0/1-855 SLICLTLPVF AGRWLMSFWT GTAKIHELYT AACGLYVCWL TIRAVTVLVA ENSP00000274140/1-910 SLICLTLPVF AGRWLMSFWT GTAKIHELYT AACGLYVCWL TIRAVTVMVA ENSBTAP00000036510/1-910 SLICLTLPVF AGRWLMSFWT GTAKIHELYT AACGLYVCWL TIRAVTVLVA 701 750 BACU012891/1-853 WMPQGRRVIF QKVKEWSLMI MKTVIVAVLL AGVVPLLLGL LFELVIVAPL ENSTTRP00000000217/1-901 WMPQGRRVIF QKVKEWSLMI MKTVIVAVLL AGVVPLLLGL LFELVIVAPL bmy_15025T0/1-855 WMPQGRRVIF QKVKEWSLMI MKTVIVAVLL AGVVPLLLGL LFELVIVAPL ENSP00000274140/1-910 WMPQGRRVIF QKVKEWSLMI MKTLIVAVLL AGVVPLLLGL LFELVIVAPL ENSBTAP00000036510/1-910 WMPQGRRVIF QKVKEWSLMI MKTVIVAVLL AGVVPLLLGL LFELVIVAPL 751 800 BACU012891/1-853 RVPLDQTPLF YPWQDWALGV LHAKIIAAIT LMGPQWWLKT VIEQVYANGI ENSTTRP00000000217/1-901 RVPLDQTPLF YPWQXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXVYANGI bmy_15025T0/1-855 RVPLDQTPLF YPWQDWALGV LHAKIIAAIT LMGPQWWLKT VIEQVYANGI ENSP00000274140/1-910 RVPLDQTPLF YPWQDWALGV LHAKIIAAIT LMGPQWWLKT VIEQVYANGI ENSBTAP00000036510/1-910 RVPLDQTPLF YPWQDWALGV LHAKIIAAIT LMGPQWWLKT VIEQVYANGI 801 850 BACU012891/1-853 RNIDLQYIIR KLAAPVISVL LLSLCVPYVI ASGVVPLLGV TAEMQNLVHR ENSTTRP00000000217/1-901 RNIDLQYIIR KLAAPVISVL LLSLCVPYVI ASGVVPLLGV TAEMQNLVHR bmy_15025T0/1-855 RNIDLQYIIR KLAAPVISVL LLSLCVPYVI ASGVVPLLGV TAEMQNLVHR ENSP00000274140/1-910 RNIDLHYIVR KLAAPVISVL LLSLCVPYVI ASGVVPLLGV TAEMQNLVHR ENSBTAP00000036510/1-910 RNIDLQYIVR KLAAPVISVL LLSLCVPYVI ASGIVPLLGV TAEMQNLVHR 851 900 BACU012891/1-853 RIYPFLLMVV VLMGILSFQV RQFKRLYEHI KNDKYLVGQR LVNYERKSGK ENSTTRP00000000217/1-901 RIYPFLLMVV VLMGILSFQV RQFKRLYEHI KNDKYLVGQ- LVNYERKSGK bmy_15025T0/1-855 RIYPFLLMVV VLMGILSFQV RQFKRLYEHI KNDKYLVGQR LVNYERKSGK ENSP00000274140/1-910 RIYPFLLMVV VLMAILSFQV RQFKRLYEHI KNDKYLVGQR LVNYERKSGK ENSBTAP00000036510/1-910 RIYPFLLMVV VLMGILSFQV RQFKRLYEHI KNDKYLVGQR LVNYERKSGK 901 950 BACU012891/1-853 QGTSPPPPQS SQE ENSTTRP00000000217/1-901 QGTSPPHSQS SQE bmy_15025T0/1-855 QGTSPPPPQS SQE ENSP00000274140/1-910 QGSSPPPPQS SQE ENSBTAP00000036510/1-910 QGTSPPPPQS SQE