KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:01 2014 Check: 00 .. Name: ENSTTRP00000015592/1-899 Len: 1196 Check: 8104 Weight: 1.00 Name: BACU019745/1-1073 Len: 1196 Check: 9666 Weight: 1.00 Name: bmy_11059T0/1-656 Len: 1196 Check: 3520 Weight: 1.00 Name: ENSP00000366036/1-1140 Len: 1196 Check: 3576 Weight: 1.00 Name: ENSBTAP00000036550/1-1070 Len: 1196 Check: 3598 Weight: 1.00 // 1 50 ENSTTRP00000015592/1-899 ---------- ---------- ---------- ---------- ---------- BACU019745/1-1073 ---------- ---------- ---------- ---------- ---------- bmy_11059T0/1-656 ---------- ---------- ---------- ---------- ---------- ENSP00000366036/1-1140 MWLKPEEVLL KNALKLWVTQ KSSCYFILQR RRGHGEGGGR LTGRLVGALD ENSBTAP00000036550/1-1070 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000015592/1-899 ---------- ---------- ---------- ---------- ---------- BACU019745/1-1073 ---------- ---------- ---------G ATLEEINQHW DWLEQNLLHT bmy_11059T0/1-656 ---------- ---------- ---------- ---------- ---------- ENSP00000366036/1-1140 AVLDSNARVA PFRILLQVPG SQVYSPIACG ATLEEINQHW DWLEQNLLHT ENSBTAP00000036550/1-1070 ---------- ---------- ---------G ATLEEINQHW DWLEQNLLHT 101 150 ENSTTRP00000015592/1-899 ---------- ---------- ---------- ---------- ---------- BACU019745/1-1073 LSVFDNKDDI ASFVKGKVKA LIAEETSSRL AEQEEEPEKF REALVKFEAR bmy_11059T0/1-656 -MCFQKEKPA ARFGSG---- ---------- ---------- ---------- ENSP00000366036/1-1140 LSVFDNKDDI ASFVKGKVKA LIAEETSSRL AEQEEEPEKF REALVKFEAR ENSBTAP00000036550/1-1070 LSVFDNKDDI ASFVKGKVKA LIAEETSSRL AEQEEEPEKF REALVKFEAR 151 200 ENSTTRP00000015592/1-899 ---------- ---------- ---------- ---------- ---------- BACU019745/1-1073 FNFPEAEKLV TYYSCCCWKG RVPRQGWLYL SINHLCFYSF FLGKELKLVV bmy_11059T0/1-656 ---------- -----CSHVS DV--YGWGH- ---------- ---------- ENSP00000366036/1-1140 FNFPEAEKLV TYYSCCCWKG RVPRQGWLYL SINHLCFYSF FLGKELKLVV ENSBTAP00000036550/1-1070 FNFPEAEKLI TYYSCCCWKG RVPRQGWLYL SINHLCFYSF FLGKELKLVI 201 250 ENSTTRP00000015592/1-899 ---------- ---------- ---------- ---------- ---MEQLADV BACU019745/1-1073 PWVDIQKLER TSNVFLTDTI RITTRNKERD FSMFLNLDEV FKIMEQLADV bmy_11059T0/1-656 -WPHFHRI-- ---------- ---------- ---------- ---------- ENSP00000366036/1-1140 PWVDIQKLER TSNVFLTDTI RITTQNKERD FSMFLNLDEV FKVMEQLADV ENSBTAP00000036550/1-1070 PWVDVQRLER TSNVFLTDTI RITTQNKERD FSMFLNLDEV FKIMEQLADV 251 300 ENSTTRP00000015592/1-899 TLRRLLDNEG FDLDPGLQEP SQITKRDLEA RAQNEFFRAF FRLPRREKLH BACU019745/1-1073 TLRRLLDNEG FDLDPGLQEP SQITKRDLEA RAQNEFFRAF FRLPRREKLH bmy_11059T0/1-656 ---RIL---- ---------- ------DLEA RAQNEFFRAF FRLPRREKLH ENSP00000366036/1-1140 TLRRLLDNEV FDLDPDLQEP SQITKRDLEA RAQNEFFRAF FRLPRKEKLH ENSBTAP00000036550/1-1070 TLRRLLDNEG FDLDPGLQEP SQITKRDLEA RAQNEFFRAF FRLPRREKLH 301 350 ENSTTRP00000015592/1-899 AVLDCSLWTP FSRCHTAGRM FASDSYICFA SKEAGCCKVI LPFREVVSIE BACU019745/1-1073 AVLDCSLWTP FSRCHTAGRM FTSDSYVCFA SKEAGCCKVI LPLREVVSIE bmy_11059T0/1-656 AVLDCSLWTP FSRCHTAGRM FTSDSYVCFA SKEAGCCKVI LPLREVVSIE ENSP00000366036/1-1140 AVVDCSLWTP FSRCHTTGRM FASDSYICFA SREDGCCKII LPLREVVSIE ENSBTAP00000036550/1-1070 AVLDCSLWTP FSRCHTAGQM FTSDSYICFA SKEAGCCKVI LPLREVVSIE 351 400 ENSTTRP00000015592/1-899 KMEDTSLLPN PIIVSVRSKM AFQFIELTDR DSLMESLLAR LXXXXXXXXX BACU019745/1-1073 KMEDTSLLPN PIIVSIRSKM AFQFIELADR DSLVE----- -KVGGFDGES bmy_11059T0/1-656 KMEDTSLLPN PIIVSIRSKM AFQFIELADR DSLVESLLVR LKQVHADHPV ENSP00000366036/1-1140 KMEDTSLLPH PIIVSIRSKV AFQFIELRDR DSLVEALLAR LKQVHANHPV ENSBTAP00000036550/1-1070 KMEDTSLLPN PIIVSIRSKM AFQFIELRDR DSLVEGLLAR LKLVHADHPV 401 450 ENSTTRP00000015592/1-899 XXXXXXXXXX TSSVFHSTSM CG-DHRFGRI E--MVSSQNS EEREKEMSPQ BACU019745/1-1073 THSSDRRKGG KGSQYLRAVF SRWPSSVLEA EGAMVLSQPH WGRAPCATSS bmy_11059T0/1-656 LYDTTRDEDL TSSVFHSTSM CG-DHRFGRI E--MVSSQNS EEREKEMSPQ ENSP00000366036/1-1140 HYDTSADDDM ASLVFHSTSM CS-DHRFGDL E--MMSSQNS EESEKEKSPL ENSBTAP00000036550/1-1070 HYDTTLDEEL TSPVFHSTSL CSGSHRFGGL E--MVSSQNS EEREKETSPR 451 500 ENSTTRP00000015592/1-899 LHPEALVAGF RRSGSQSPDS RLP---REQI KMRLWNDHFV EYGRTVCMFR BACU019745/1-1073 LAGKALCGPY SLLRIKSVGS SVSLFFPEQI KMRLWNDHFV EYGRTVCMFR bmy_11059T0/1-656 LHPEALVAGF RRSGSQSPDS RLS---REQI KMRLWNDHFV EYGRTVCMFR ENSP00000366036/1-1140 MHPDALVTAF QQSGSQSPDS RMS---REQI KISLWNDHFV EYGRTVCMFR ENSBTAP00000036550/1-1070 MHPEA----F RQSGSQSPDS GLS---REQI KVSLWNDHFV EYGRTVCMFR 501 550 ENSTTRP00000015592/1-899 TEKIRKLVAM GIPESLRGKL WLLFS----- -DAVTDLASH PGYYGNLVEE BACU019745/1-1073 TEKIRKLVAM GIPESLRGKL WLLFS----- -DAVTDLASH PGYYGNLVEE bmy_11059T0/1-656 TEKIRKLVAM GIPESLRGKL WLLFS----- -DAVTDLASH PGYYGNLVEE ENSP00000366036/1-1140 TEKIRKLVAM GIPESLRGRL WLLFS----- -DAVTDLASH PGYYGNLVEE ENSBTAP00000036550/1-1070 TEKIRKLVAM GIPESLRGRL WLLFSVTCKS PDAVTDLAAH PGYYGNLVEE 551 600 ENSTTRP00000015592/1-899 SMGKCCLVTE EIERDLHRSL PEHPAFQNET GIAALRRVLT AYAHRNPRIG BACU019745/1-1073 SMGKCCLVTE EIERDLHRSL PEHPAFQNET GIAALRRVLT AYAHRNPRIG bmy_11059T0/1-656 SMGKCCLVTE EIERDLHRSL PEHPAFQNET GIAALRRVLT AYAHRNPRIG ENSP00000366036/1-1140 SLGKCCLVTE EIERDLHRSL PEHPAFQNET GIAALRRVLT AYAHRNPKIG ENSBTAP00000036550/1-1070 SMGKCCLVTE EIERDLHRSL PEHPAFQNET GIAALRRVLT AYAHRNPKIG 601 650 ENSTTRP00000015592/1-899 YC-QSMNILT SLLLLYAEEE EAFWLLVAVC ERMLPDYFNH RVIXXXXXXX BACU019745/1-1073 YC-QSMNILT SLLLLYAEEE EAFWLLVAVC ERMLPDYFNH RVIGAQVDQS bmy_11059T0/1-656 YC-QSMNILT SLLLLYAEEE EAFWLLVAVC ERMLPDYFNH RVIGAQVDQS ENSP00000366036/1-1140 YC-QSMNILT SVLLLYTKEE EAFWLLVAVC ERMLPDYFNH RVIGAQVDQS ENSBTAP00000036550/1-1070 YCQQSMNILT SVLLLYAKEE EAFWLLVAVC ERMLPDYFNH RVIGAQVDQS 651 700 ENSTTRP00000015592/1-899 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU019745/1-1073 VFEELIKEQL PELAEHMHDL SALASISLSW FLTLFLSIMP LESAVNVVDC bmy_11059T0/1-656 VFEELIKEQL PELAEHMHDL SALASISLSW FLTLFLSIMP LESAVNVVDC ENSP00000366036/1-1140 VFEELIKGHL PELAEHMNDL SALASVSLSW FLTLFLSIMP LESAVNVVDC ENSBTAP00000036550/1-1070 VFEELIKEQL PELAEHMHDL SALASISLSW FLTLFLSIMP LESAVNVVDC 701 750 ENSTTRP00000015592/1-899 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXF LDHIKNEDSP BACU019745/1-1073 FFYDGIKAIF QLGLAVLEAN AEDLCSSKDD SQALMVLSRF LDHIKSEDSP bmy_11059T0/1-656 FFYDGIKAIF QLGLAVLEAN AEDL------ ---------F LDHIKNEDSP ENSP00000366036/1-1140 FFYDGIKAIF QLGLAVLEAN AEDLCSSKDD GQALMILSRF LDHIKNEDSP ENSBTAP00000036550/1-1070 FFYDGIKAIF QLGLAVLEAT AEGLCSSKDD SQAFMVLSRF LDHVKNEDSP 751 800 ENSTTRP00000015592/1-899 GPPLGSHHAF FSDDQEPCPM TDIADLIRDS YEKFGDQSVA QIEHMRCKHR BACU019745/1-1073 GPPLGSHHAF FSDGQEPCPV TDIADLIRDS YEKFGDRSVA QIEHMRCKHR bmy_11059T0/1-656 GPPLGSHHAF FSDDQEPCPM TDIADLIRDS YEKFGDQSVA QIEHMRCKHR ENSP00000366036/1-1140 GPPVGSHHAF FSDDQEPYPV TDISDLIRDS YEKFGDQSVE QIEHLRYKHR ENSBTAP00000036550/1-1070 GPPIGSHHAF FSDDQEPCPV TDIADLIRDS YEKFGDQSVA QIEHMRCRHR 801 850 ENSTTRP00000015592/1-899 IRVLQGHEDT TKQNV----- LRVVIPEVSV LPEDLEELYD LFKREHMMSC BACU019745/1-1073 MRVLQGHEDT TKQNV----- LRVVIPEVSV LPEDLEELYD LFKREHMMNC bmy_11059T0/1-656 MRVLQGHEDT TKQNVVSRGL LRTAAPGG-- ---------- --QREHMMNC ENSP00000366036/1-1140 IRVLQGHEDT TKQNV----- LRVVIPEVSI LPEDLEELYD LFKREHMMSC ENSBTAP00000036550/1-1070 IRVLQGHEDT TKQNV----- LRVVIPEVSV LPEDLEELYD LFKREHMMSC 851 900 ENSTTRP00000015592/1-899 YWEQPRPVA- RHDPSRPYAE QYRIDARQFA RLFQLVSPWT CGAHTEILAE BACU019745/1-1073 YWEQPRPVAL RHDPSRPYAE QYRIDARQFA RLFQLVSPWT CGAHTEILAE bmy_11059T0/1-656 YWEQPRPVAL RHDPSRPYAE QYRIDARQFA RLFQLVSPWT CGAHTEILAE ENSP00000366036/1-1140 YWEQPRPMAS RHDPSRPYAE QYRIDARQFA HLFQLVSPWT CGAHTEILAE ENSBTAP00000036550/1-1070 YWEQPRPMAP RHDPSRPYAE QYRIDAQQFA RLFQLVSPWT CGAHTEILAE 901 950 ENSTTRP00000015592/1-899 RTFRLLDENM DHLIEFKAFV SCLDI----- ---------- ---------- BACU019745/1-1073 RTFRLLDENM DHLIEFKAFV SCLGMTPWVF PAVSSFGMAP LVARGHSATI bmy_11059T0/1-656 RTFRLLDENM DHLIEFKAFV SCLGK----- ---------- ---------- ENSP00000366036/1-1140 RTFRLLDDNM DQLIEFKAFV SCLDI----- ---------- ---------- ENSBTAP00000036550/1-1070 RTFRLLDENM DHLIEFKAFV SCLDI----- ---------- ---------- 951 1000 ENSTTRP00000015592/1-899 --MYNGEMNE KIKLLYRLHI PPALTENDRD SQSPLK---- --NPLLSTSR BACU019745/1-1073 IYLWPLFVKQ TSDLCFSVCI QNLLSGIPHP LTIPFYLFSF CFHGIYLRLK bmy_11059T0/1-656 ---------- ---------- ---------- ---------- ---------- ENSP00000366036/1-1140 --MYNGEMNE KIKLLYRLHI PPALTENDRD SQSPLR---- --NPLLSTSR ENSBTAP00000036550/1-1070 --MYNGEMNE KIKLLYRLHI PPALTENDRD SQSPLK---- --NPLLSTSR 1001 1050 ENSTTRP00000015592/1-899 PLVFGKSNGD TVDYQKQLKQ MIKDLAKEKD KTEKELPKMS QREFIQFCKT BACU019745/1-1073 YILFPLSQGD TVDYQKQLKQ MIKDLAKEKD KTEKELPKMS QREFIQFCKT bmy_11059T0/1-656 ---------- ---------- ---------- ---------- ---------- ENSP00000366036/1-1140 PLVFGKPNGD AVDYQKQLKQ MIKDLAKEKD KTEKELPKMS QREFIQFCKT ENSBTAP00000036550/1-1070 PLVFGKSNGD TIDYQKQLKQ MIKDLAKEKD KTEKELPKMS QREFIQFCKT 1051 1100 ENSTTRP00000015592/1-899 LYSMFHEDPE ENDLYQAIVT VTTLLLQIGE VGQRGSSSGS CSQEAGEEPQ BACU019745/1-1073 LYSMFHEDPE ENDLYQAIAT VTTLLLQIGE VGQRGSSSGS CSQEGGEDPQ bmy_11059T0/1-656 ---------- ---------- ----KFQVEK LG-------- ---------- ENSP00000366036/1-1140 LYSMFHEDPE ENDLYQAIAT VTTLLLQIGE VGQRGSSSGS CSQECGEELR ENSBTAP00000036550/1-1070 LYSMFHEDPE ENDLYQAIAT VTTLLLQIGE VGQRGSSSGS GSQEGGEELQ 1101 1150 ENSTTRP00000015592/1-899 ALVPSP--EQ DSVFADTHNG KSPRESQAFP EAAQGDWTVS LEHILASLLT BACU019745/1-1073 ASAPSP--EQ DSVFADTHNG KSPRESQVFP EEAQGDWTVS LEHILASLLT bmy_11059T0/1-656 ---------- ---------- ------SVLP ---------- ---------- ENSP00000366036/1-1140 ASAPSP---E DSVFADT--G KTPQDSQAFP EAAERDWTVS LEHILASLLT ENSBTAP00000036550/1-1070 ASAPSPSSEQ DLVFAETDTG QSPQASQAFP EEAQGDWTVS LEHILASLLT 1151 1200 ENSTTRP00000015592/1-899 EQSLVNFFEK PLDIKSKLEN AKINQYSLKT CEMNRQSQPE LKLSSP BACU019745/1-1073 EQSLVNFFEK PLDIKSKLEN AK-------- ---------- ------ bmy_11059T0/1-656 ---------- ---------- ---------- ---------- ------ ENSP00000366036/1-1140 EQSLVNFFEK PLDMKSKLEN AKINQYNLKT FEMSHQSQSE LKLSNL ENSBTAP00000036550/1-1070 EQSLVNFFEK PLDIKSKLEN AKLNQYSLKT CEMSRQSQPE LKLSSP