KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:02 2014 Check: 00 .. Name: ENSP00000294064/1-461 Len: 493 Check: 2738 Weight: 1.00 Name: ENSBTAP00000036593/1-428 Len: 493 Check: 5754 Weight: 1.00 Name: ENSTTRP00000005515/1-423 Len: 493 Check: 5517 Weight: 1.00 Name: bmy_01319T0/1-438 Len: 493 Check: 1619 Weight: 1.00 Name: BACU004991/1-457 Len: 493 Check: 8860 Weight: 1.00 // 1 50 ENSP00000294064/1-461 MRPADLPPRP MEESPASSSA PTETEEPGSS AEVMEEVTTC SFNSPLFRQE ENSBTAP00000036593/1-428 ---------- ---------- ---------- ---MEEVTSC SFSSPLFQQE ENSTTRP00000005515/1-423 ---------- ---------- ---------- ---MEEMTSC SFNSPLFQQE bmy_01319T0/1-438 ---------- ---------- ---MEEPGSR AEVMEEMTSC SFNSPLFQQE BACU004991/1-457 ---------- ---------- ---MEEPGSR AEVMEEMTSC SFNSPLFQQE 51 100 ENSP00000294064/1-461 DDRGITYRIP ALLYIPPTHT FLAFAEKRST RRDEDALHLV LRRGLRIGQL ENSBTAP00000036593/1-428 DKRGVTYRIP ALIYVPPAHT FLAFAEKRSS SKDEDALHLV LRRGLRTGQS ENSTTRP00000005515/1-423 DERGVTYRIP ALLYVPPTHT FLAFAEKRSS SRDEDALHLV LRRGLRTGHS bmy_01319T0/1-438 DKRGITYRIP ALLYVPPTHT FLAFAEKRSS SRDEDALHLV LRRGLRTGHS BACU004991/1-457 DKRGITYRIP ALLYVPPTHT FLAFAEKRSS SRDEDALHLV LRRGLRTGHS 101 150 ENSP00000294064/1-461 VQWGPLKPLM EATLPGHRTM NPCPVWEQKS GCVFLFFICV RGHVTERQQI ENSBTAP00000036593/1-428 VQWEPLKSLM KATLPGHRTM NPCPVWERKS GYVYLFFICV QGHVTERQQI ENSTTRP00000005515/1-423 VQWEPLKPLM EATLPGHRTM NPCPVWEQKS GRVYLFFICV RGHVTERRQI bmy_01319T0/1-438 VQWEPLKPLM EATLPGHRTM NPCPVWEQKS GHVYLFFICV RGRVTERQQI BACU004991/1-457 VQWEPLKPLM EATLPGHRTM NPCPVWEQKS GRVYLFFICV RGRVTERQQI 151 200 ENSP00000294064/1-461 VSGRNAARLC FIYSQDAGCS WSEVRDLTEE VIGSELKHWA TFAVGPGHGI ENSBTAP00000036593/1-428 MSGRNAARLC FICSQDAGYS WSDVRDLTEE VIGPEVTHWA TFAVGPGHGI ENSTTRP00000005515/1-423 VSGRNAARLC FICSQDAGYS WSEVRDLTEE VIGPEVEHWA TFAVGPGHGI bmy_01319T0/1-438 VSGRNATRLC FICSQDAGYS WSEVRDLTEE VIGPEVENWA TFAVGPGHGI BACU004991/1-457 V--------- ----QDAGYS WSEVRDLTEE VIGPEVEHWA TFAVGPGHGI 201 250 ENSP00000294064/1-461 QLQSGRLVIP AYTYYIPSWF FCFQLPCKTR PHSLMIYSDD LGVTWHHGRL ENSBTAP00000036593/1-428 QLQSGRLIIP AYAYYIPFWF FCFRLPYRAR PHSLMIYSDD LGATWHHGRL ENSTTRP00000005515/1-423 QLQSGRLIIP AYAYYIPYRF FCFRLPYKAR PHSLMIYSDD LGATWHHGRL bmy_01319T0/1-438 QLQSGRLIIP AYAYYIPYRF FCFRLPYKAR PHSLMIYSDD LGATWHHGRL BACU004991/1-457 QLQSGRLIIP AYAYYIPYRF FCFRLPYKAR PHSLMIYSDD LGATWHHGRL 251 300 ENSP00000294064/1-461 IRPMVTVECE VAEVTGRAGH PVLYCSARTP NRCRAEALST DHGEGFQRLA ENSBTAP00000036593/1-428 IKPMVTVECE VAEVIGKAGH PVLYCSARTP NRHRAEALSI DHGECFQKPV ENSTTRP00000005515/1-423 IKPMVTVECE VAEVTGKAGH AVLYCSARTP NRCRAEALST DHGECFQKPA bmy_01319T0/1-438 IKPMVTVECE VAEVTGKAGH AVLYCSARTP NRCRAEALST DHGECFQKPA BACU004991/1-457 IKPMVTVECE VAEVTGKAGH AVLYCSARTP NRCRAEALST DHGECFQKPA 301 350 ENSP00000294064/1-461 LSRQLCEPPH GCQGSVVSFR PLEIPHRCQD SSSKDAPTIQ QSS-PGSSLR ENSBTAP00000036593/1-428 LSHQLCEPPH GCQGSVVSFC PLEIPGGCQN LAGEDAPAIQ QSPLLCSSVR ENSTTRP00000005515/1-423 LSQQLCEPPH GCQGSVVSFR SLEIANGCKH PAGKDAPTIQ QSHLLDSSLR bmy_01319T0/1-438 LSQQLCEPPR GCQGSVVSFR SLEIPNGCQH PAGKDAATIQ QSHLLDSSLR BACU004991/1-457 LSQQLCEPPR GCQGSVVSFR SLEIPDGCQH PAGKDAPTIQ QSHLLDGSLR 351 400 ENSP00000294064/1-461 LEEEAGTPSE SWLLYSHPTS RKQRVDLGIY LNQTPLEAAC WSRPWILHCG ENSBTAP00000036593/1-428 PEPEAGTLSE SWLLYSHPTN KKRRVDLGIY LNQSPLEAAC WSRPWILHCG ENSTTRP00000005515/1-423 LEPEARTLSE SWLLYSHPTS KNRRV-LGI- LNQSPLE-AC WSRPWILHCG bmy_01319T0/1-438 LEPEAGTLSE SWLLYSHPTS KKRRVDLGIY LNQSPLEAAC WSRPWILHCG BACU004991/1-457 LEPEAGTLSE SWLLYSHPTS KKRRVDLGIY LNQSPLEAAC WSRPWILHCG 401 450 ENSP00000294064/1-461 PCGYSDLAAL EEEGLFGCLF ECGTKQECEQ IAFRLFTHRE ILSHLQGDCT ENSBTAP00000036593/1-428 PCGYSDLAAL ENEGLFGCLF ECGTKQECEQ IAFRLFTDRE ILSHVQGDCS ENSTTRP00000005515/1-423 PCGYSDLAAL E-EGLFGCLF ECGTKRECEQ IAFRLFTDRE VLSHVQGDST bmy_01319T0/1-438 PCGYSDLAAL EKEGLFGCLF ECGTKRECEQ IAFRLFTDRE ILSHVQGDCT BACU004991/1-457 PCGYSDLAVL EKEALFGCLF ECGTKRECEQ IAFRLFTDRE ILSHVQGDCT 451 500 ENSP00000294064/1-461 SPG------- ---------- ---------- ---RNPSQFK SN- ENSBTAP00000036593/1-428 TPG------- ---------- ---------- ---MNSEPSK K-- ENSTTRP00000005515/1-423 SPG------- ---------- ---------- ---RNLSQLN --- bmy_01319T0/1-438 SPG------- ---------- ---------- ---RNSEPTQ N-- BACU004991/1-457 SPGAPGPGFF GVKTLENGQE AAAPILLLYV PGLKAQVPVT EVE