KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:03 2014 Check: 00 .. Name: ENSP00000355529/1-540 Len: 562 Check: 6622 Weight: 1.00 Name: ENSBTAP00000036829/1-534 Len: 562 Check: 9841 Weight: 1.00 Name: ENSTTRP00000012010/1-537 Len: 562 Check: 2817 Weight: 1.00 Name: bmy_04772T0/1-551 Len: 562 Check: 4640 Weight: 1.00 Name: BACU019986/1-541 Len: 562 Check: 2941 Weight: 1.00 // 1 50 ENSP00000355529/1-540 MWL-LRCVLL CVSLSLAVSG QHKPEAPDYS SVLHCGPWSF QFAVN-LNQE ENSBTAP00000036829/1-534 MWLLLQLVWL CFLLSLGLNS WHQSKVPEYP DELRCGLRSF QFTINPLSQE ENSTTRP00000012010/1-537 MWL-LQSLWL WFPLSVALSG QHEPKAPGYP GGLRCGLRSF QFTIN-LSQE bmy_04772T0/1-551 MWL-LQSLWL WFPLSVAVSG QREPEAPGYP GGLRCGLRSF QFTINLLSQE BACU019986/1-541 MWL-LRSLWL WFPLSVALSG QREPEAPGYP GGLRCGLRSF QFTISLLSQE 51 100 ENSP00000355529/1-540 ATSPPVLIAW DNQGLLHELQ NDSDCGTWIR KGPGSSVVLE ATYSSCYVTE ENSBTAP00000036829/1-534 TETPPVLVAW DNHGLPHSLQ NDSDCGTWVS EGPGSSLVGE ASYSGCYVTE ENSTTRP00000012010/1-537 TATPPALIAW DNRGLPHRLQ NDSECGTRVT EGPGSSLVVD VSYSGCYVTE bmy_04772T0/1-551 TATPPALVAW DNRGLPHRLQ NDSECGTWVS EGPGSSLLVD VSYSGCYVTE BACU019986/1-541 TATPPALVAW DNRGLPHRLQ NDSECGTWVS EGPGSSLLVD VSYSGCYVTE 101 150 ENSP00000355529/1-540 WDSHYIMPVG VEGAGAAEHK VVTERKLLKC PMDLLARDAP DTDWCDSIPA ENSBTAP00000036829/1-534 WESYYIMTVG IERAGVSGSG AFIETKLFKC PVNLP--DVP NAGLCDSVPV ENSTTRP00000012010/1-537 WDSHYIMPVG VEGADAGGRR TVTETKLFRC PVDLPXXXXP NAGLCDSVPV bmy_04772T0/1-551 WDSHYIMPVG VEGADAGGRR TVTETKLFRC PMDLPALDFP NAGLCDSVPV BACU019986/1-541 WDSHYVMPVG VERADAGGRR TVTETKLFRC PVDLPALDVP NGGLCDSVPV 151 200 ENSP00000355529/1-540 RDRLPCAPSP ISRGDCEGLG CCYSSEEVNS CYYGNT---- ---------- ENSBTAP00000036829/1-534 WDRLPCAPSP ITQGDCKQLG CCYNSEEVIS CYYGNT---- ---------- ENSTTRP00000012010/1-537 WDRLPCAPSP ITQGDCKQLG CCYDSEETNS CYYGNT---- ---------- bmy_04772T0/1-551 WDRLPCAPSP ITQGDCKQLG CCYDSEEVNS CYYGNTVTSE MTCLQHSCSG BACU019986/1-541 WDRLPCAPSP ITQGDCKQLG CCYDSEEVNS CYYGNT---- ---------- 201 250 ENSP00000355529/1-540 --VTLHCTRE GHFSIAVSRN VTSPPLLLDS VRLALRNDSA CNPVMATQAF ENSBTAP00000036829/1-534 --VTSHCTQD GHFSIAVSRN VTSPPLLLNS VHLAFRNDSE CKPVMATHTF ENSTTRP00000012010/1-537 --VTARCTQD GHFSIAVSRN VTSPPLLLNS VHLAFRNDSE CKPVMATHTF bmy_04772T0/1-551 VSVTARCTQD GHFSIAVSRN VTSPPLLLNS VHLAFRNDSE CKPATATHTF BACU019986/1-541 --VTARCTQD GHFSIAVSRN VTSPPLLLNS VHLAFRNDSE CKPATATHTF 251 300 ENSP00000355529/1-540 VLFQFPFTSC GTTRQITGDR AVYENELVAT RDVKNGSRGS VTRDSIFRLH ENSBTAP00000036829/1-534 VLFRFPFTTC GTTKQITGKQ AVYENELVAA RDVRTWSRGS ITRDSTFRLQ ENSTTRP00000012010/1-537 VLFQFPFTAC GTTKWITGTQ AVYENELVAI RDVRTWSHGS ITRDSIFRLR bmy_04772T0/1-551 VLFRFPFTAC GTTKWITGNQ AVYESELVAT RDVRTWSHGS ITRDSVFRLR BACU019986/1-541 VLFRFPFTAC GTTKWITGNQ AVYENELVAT RDVRTWSRGS ITRDSIFRLR 301 350 ENSP00000355529/1-540 VSCSYSVSSN SLPINVQVFT LPPPFPETQP GPLTLELQIA KDKNYGSYYG ENSBTAP00000036829/1-534 VSCSYSASSS ALPVNVQVLT LPPPLPETQP GNLTLELKIA KDKRYRSYYT ENSTTRP00000012010/1-537 ISCSYSVSSN ALPVNVQVFT VPPPLPETQP GHLTLELQIA KDKHYSSYYT bmy_04772T0/1-551 ISCSYSASSS ALPVNVQVFT LPPPLPETQP GHLTLELQIA KDKHYSSYYT BACU019986/1-541 ISCSYSASSS ALPVNVQVFT LPPPLPETQP GHLTLELQIA KDKHYSSYYT 351 400 ENSP00000355529/1-540 VGDYPVVKLL RDPIYVEVSI LHRTDPYLGL LLQQCWATPS TDPLSQPQWP ENSBTAP00000036829/1-534 ASDYPVVKLL RDPIYVEVSI HQRTDPSLEL RLDQCWATPG ADALLQPQWP ENSTTRP00000012010/1-537 ASDYPVVKLL RDPIYVEVSI QHRTDPSLEL RLHQCWATPS TNALLQPQWP bmy_04772T0/1-551 ASDYPVVKLL RDPIYVEVSI QHRTDPSLEL RLHQCWATPS TNALLQPQWP BACU019986/1-541 ASDYPVVKLL RDPIYVEVSI QHRTDPSLEL RLHQCWATPS TNALLQPQWP 401 450 ENSP00000355529/1-540 ILVKGCPYIG DNYQTQLIPV QKALDLPFPS HHQRFSIFTF SFVNPTVEKQ ENSBTAP00000036829/1-534 LLVNGCPYTG DNYQTKLIPV WEASDLPFPS HYQRFSISTF SFVD-SVAKR ENSTTRP00000012010/1-537 MLVNGCPYTG DNYQTKPIPV QRALDLPFPS HYQRFSISTF SFVD-SVAKQ bmy_04772T0/1-551 MLVNGCPYTG DNYQTKLIPV RRALDLPFPS HHQRFSISTF SFVD-SAAKQ BACU019986/1-541 MLVNGCPYTG DNYQTKLIPI RRTLDLAFPS HHQRFSISTF SFVD-SAAKQ 451 500 ENSP00000355529/1-540 ALRGPVHLHC SVSVCQPAET PSCVVTCPDL SRRRNFDNSS QNTTASVSSK ENSBTAP00000036829/1-534 ALKGPVYLHC SASVCQPAGT PSCVTLCPA- RRRRSSDIHF QNNTASISSK ENSTTRP00000012010/1-537 ALKGPVYLHC SASVCQPAGT PSCVTTCPA- RRRRSSDVHF QNSTASISSQ bmy_04772T0/1-551 ALKGPVYLHC SASVCQPAGT PSCVTICPA- RRRRSSDIHF QNSTASISSQ BACU019986/1-541 ALKGPVYLHC SASVCQPAGT PSCVTTCPA- RRRRSSDIHF QNSTASISSQ 501 550 ENSP00000355529/1-540 GPMILLQATK DPPEKL---- RVPVDSKVLW VAGLSGTLIL GALLVSYLAV ENSBTAP00000036829/1-534 GPLILLQAIQ DSSEKLHKYS RSPVDSQALW VAGLSGILIV GALFMSYLAI ENSTTRP00000012010/1-537 GPMILLQATQ DSSEKL---- RSPVDSQALW VAGLSGTLII GALLVSYLAI bmy_04772T0/1-551 GPMILLQATP DSSEKLRKYS RSPVDSQALW VAGLSGTLII GALLVSYLAI BACU019986/1-541 GPMILLQATP DSSEKLRKYS RSPVDSQALW VAGLSGTLII GALLVSYLAI 551 600 ENSP00000355529/1-540 KKQKSCPDQM CQ ENSBTAP00000036829/1-534 RKWR------ -- ENSTTRP00000012010/1-537 RKQMSYSDQM C- bmy_04772T0/1-551 RKRR------ -- BACU019986/1-541 RKMS-YSDQM C-