KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:04 2014 Check: 00 .. Name: ENSTTRP00000008615/1-1004 Len: 1114 Check: 2800 Weight: 1.00 Name: ENSP00000381876/1-1068 Len: 1114 Check: 7290 Weight: 1.00 Name: ENSBTAP00000036835/1-1097 Len: 1114 Check: 1207 Weight: 1.00 Name: bmy_08563T0/1-1063 Len: 1114 Check: 1049 Weight: 1.00 Name: BACU018469/1-1015 Len: 1114 Check: 3182 Weight: 1.00 // 1 50 ENSTTRP00000008615/1-1004 ---------- ---------- ---------- ---------- ---------- ENSP00000381876/1-1068 ---------- -MAPRKRSHH GLGFLCCFGG SDIPEINLRD NHPLQFMEFS ENSBTAP00000036835/1-1097 MNKEALQENV TMAPRKRSRH GLGFLCCFGG SDLPEINLRD NHPLQYMEFS bmy_08563T0/1-1063 ---------- -MAPRKRSRH GLGFLCCFGG SDLPEINLRD SHPLQYMEFS BACU018469/1-1015 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000008615/1-1004 ---------- -------DEL DLTDKNREAV FALPPEKKWQ IYCSKKKEQE ENSP00000381876/1-1068 SPIPNAEELN IRFAELVDEL DLTDKNREAM FALPPEKKWQ IYCSKKKEQE ENSBTAP00000036835/1-1097 SPIPNPEELN IRFAELVDEL DLTDKNREAV FALPPEKKWQ IYCSKKKEQE bmy_08563T0/1-1063 SPIPNPEELN VRFAELVDEL DLTDKNREAV FALPPEKKWQ IYCSKKKEQE BACU018469/1-1015 ---------- -------DEL DLTDKNREAV FALPPEKKWQ IYCSKKKEQE 101 150 ENSTTRP00000008615/1-1004 DPNKLATSWP DYYIDRINSM AAMQSLYAFD XXXXXXXXXX XXXXXXXXXX ENSP00000381876/1-1068 DPNKLATSWP DYYIDRINSM AAMQSLYAFD EEETEMRNQV VEDLKTALRT ENSBTAP00000036835/1-1097 DPNKLATSWP DYYIDRINSM AAMQSLYAFD EEETEMRNQV VEDLKTALRT bmy_08563T0/1-1063 DPNKLATSWP DYYIDRINSM AAMQSLYAFD EEETEMRNQV VEDLKTALRT BACU018469/1-1015 DPNKLATSWP DYYIDRINSM AAMQSLYAFD EEETEMRNQV VEDLKTALRT 151 200 ENSTTRP00000008615/1-1004 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000381876/1-1068 QPMRFVTRFI ELEGLTCLLN FLRSMDHATC ESRIHTSLIG CIKALMNNSQ ENSBTAP00000036835/1-1097 QPMRFVTRFI ELEGLTCLLN FLRSMDHATC ESRIHTSLIG CIKALMNNSQ bmy_08563T0/1-1063 QPMRFVTRFI ELEGLTCLLN FLRSMDHATC ESRIHTSLIG CIKALMNNSQ BACU018469/1-1015 QPMRFVTRFI ELEGLTCLLN FLRSMDHATC ESRIHTSLIG CIKALMNNSQ 201 250 ENSTTRP00000008615/1-1004 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000381876/1-1068 GRAHVLAQPE AISTIAQSLR TENSKTKVAV LEILGAVCLV PGGHKKVLQA ENSBTAP00000036835/1-1097 GRAHVLAQPE AISTIAQSLR TENSKTKVAV LEILGAVCLV PGGHKKVLQA bmy_08563T0/1-1063 GRAHVLAQPE AISTIAQSLR TENSKTKVAV LEILGAVCLV PGGHKKVLQA BACU018469/1-1015 GRAHVLAQPE AISTIAQSLR TENSKTKVAV LEILGAVCLV PGGHKKVLQA 251 300 ENSTTRP00000008615/1-1004 XXXXXXXXXX XXXXXT-LNE LDRSLGRYRD EVNLKTAIMS FINAVLNAGA ENSP00000381876/1-1068 MLHYQVYAAE RTRFQTLLNE LDRSLGRYRD EVNLKTAIMS FINAVLNAGA ENSBTAP00000036835/1-1097 MLHYQVYAAE RTRFQTLLNE LDRSLGRYRD EVNLKTAIMS FINAVLNAGA bmy_08563T0/1-1063 MLHYQVYAAE RTRFQ----- LDRSLGRYRD EVNLKTAIMS FINAVLNAGA BACU018469/1-1015 MLHYQVYAAE RTRFQTLLNE LDRSLGRYRD EVNLKTAIMS FINAVLNAGA 301 350 ENSTTRP00000008615/1-1004 GEDNLEFRLH LRYEFLMLGI QPVIDKLRQH ENAILDKHLD FFEMVRNEDD ENSP00000381876/1-1068 GEDNLEFRLH LRYEFLMLGI QPVIDKLRQH ENAILDKHLD FFEMVRNEDD ENSBTAP00000036835/1-1097 GEDNLEFRLH LRYEFLMLGI QPVIDKLRQH ENAILDKHLD FFEMVRNEDD bmy_08563T0/1-1063 GEDNLEFRLH LRYEFLMLGI QPVIDKLRQH ENAILDKHLD FFEMVRNEDD BACU018469/1-1015 GEDNLEFRLH LRYEFLMLGI QPVIDKLRQH ENAILDKHLD FFEMVRNEDD 351 400 ENSTTRP00000008615/1-1004 LELARRFDMV HIDTKSASQM FELIHKKLKH TEAYPCLLSV LHHCLQMPYK ENSP00000381876/1-1068 LELARRFDMV HIDTKSASQM FELIHKKLKY TEAYPCLLSV LHHCLQMPYK ENSBTAP00000036835/1-1097 LELARRFDMV HIDTKSASQM FELIHKKLKH TEAYPCLLSV LHHCLQMPYK bmy_08563T0/1-1063 LELARRFDMV HIDTKSASQM FELIHRKLKH TEAYPCLLSV LHHCLQIPYK BACU018469/1-1015 LELARRFDMV HIDTKSASQM FELIHRKLKH TEAYPCLLSV LHHCLQMPYK 401 450 ENSTTRP00000008615/1-1004 RN---FQQWQ LLDRILQQIV LQDERGMDPD LAPLENFNVK NIVNMLINEN ENSP00000381876/1-1068 RNGGYFQQWQ LLDRILQQIV LQDERGVDPD LAPLENFNVK NIVNMLINEN ENSBTAP00000036835/1-1097 RNGGYFQQWQ LLDRILQQIV LQDERGVDPD QAPLENFNVK NIVNMLINEN bmy_08563T0/1-1063 RN---FQQWQ LLDRILQQIV LQDERGMDPD LAPLENFNVK NIVNMLINEN BACU018469/1-1015 RN---FQQWQ LLDRILQQIV LQDERGMDPD LAPLENFNVK NIVNMLINEN 451 500 ENSTTRP00000008615/1-1004 EVKQWRDQAE KFRKEHAELV SRLERKEREC ETKTLEREEM MRTLNKMKDK ENSP00000381876/1-1068 EVKQWRDQAE KFRKEHMELV SRLERKEREC ETKTLEKEEM MRTLNKMKDK ENSBTAP00000036835/1-1097 EVKQWRDQAE KFRKEHAELV SRLERKEREC ETKTLEKEEM MRTLNKMKDK bmy_08563T0/1-1063 EVKQWRDQAE KFRKEHAELV SRLERKEREC ETKTLEREEM MRTLNKMKDK BACU018469/1-1015 EVKQWRDQAE KFRKEHAELV SRLERKEREC ETKTLEREEM MRTLNKMKDK 501 550 ENSTTRP00000008615/1-1004 LARESQELRQ ARGQVAELVA QLSEIS---- ------TGPV SSPPPPGGPL ENSP00000381876/1-1068 LARESQELRQ ARGQVAELVA QLSELS---- ------TGPV SSPPPPGGPL ENSBTAP00000036835/1-1097 LARESQELRQ ARGQVAELVA QLSEISVCGL SSPFAETGPV SSPPPPGGPL bmy_08563T0/1-1063 LARESQELRQ ARGQVAELVA QLSEIS---- ------TGPV SSPPPPGGPL BACU018469/1-1015 LARESQELRQ ARGQVAELVA QLSEIS---- ------VRPV SSPPPPGGPL 551 600 ENSTTRP00000008615/1-1004 TLSSSMTTSD LPPPPPPLPF TCCPPPPPPP LPPGGPPTPP GAPPCFSMGL ENSP00000381876/1-1068 TLSSSMTTND LPPPPPPLPF ACCPPPPPPP LPPGGPPTPP GAPPCLGMGL ENSBTAP00000036835/1-1097 TLSSSMTNND LPPPPPPLPF ACCPPPPPPP LPPGGPPTPP GAPPCFSMGM bmy_08563T0/1-1063 TLSSSMTTSD LPPPPPPLPF ACCPPPPPPP LPPGGPPTPP GAPPCFSMGL BACU018469/1-1015 TLSSSMTTSD LPPPPPPLP- ---------- -PPGGHPTPP GAPPCFSMGL 601 650 ENSTTRP00000008615/1-1004 PLPPDPFPSS DVPLRKKCVP QPSHPLKSFN WVKLNEERVP GTIWNEIDDM ENSP00000381876/1-1068 PLPQDPYPSS DVPLRKKRVP QPSHPLKSFN WVKLNEERVP GTVWNEIDDM ENSBTAP00000036835/1-1097 PLPPDPFPSS DVPLRKKCVP QPSHPLKSFN WVKLNEERVP GTIWNEIDDM bmy_08563T0/1-1063 PLPPDPFPSS DVPLRKKCVP QPSHPLKSFN WVKLNEERVP GTIWNEIDDM BACU018469/1-1015 PLPPDPFPSS DVPLRKKCVP QPSHPLKSFN WVKLNEERVP GTIWNEIDDM 651 700 ENSTTRP00000008615/1-1004 QVFRILDLAD FEKMFSAYQR H--------- ---------- QKELGSTEDI ENSP00000381876/1-1068 QVFRILDLED FEKMFSAYQR H--------- ---------- QKELGSTEDI ENSBTAP00000036835/1-1097 KVFRILDLED FEKMFSAYQR HQE------- ---LITNPSQ QKELGSTEDI bmy_08563T0/1-1063 QVFRILDLAD FEKMFSAYQR H--------- ---------- QKELGSTEDI BACU018469/1-1015 QVFRILDLAD FEKMFSAYQR HQEEDWGRHT LHPFYLACRL QKELGSTEDI 701 750 ENSTTRP00000008615/1-1004 YLASRKVKEL SVIDGRRAQN CIILLSKLKL SNEEIRQAIL MMDEQEDLAK ENSP00000381876/1-1068 YLASRKVKEL SVIDGRRAQN CIILLSKLKL SNEEIRQAIL KMDEQEDLAK ENSBTAP00000036835/1-1097 HLASRKVKEL SVIDGRRAQN CIILLSKLKL SNEEIRQAIL KMDEQEDLAK bmy_08563T0/1-1063 YLASRKVKEL SVIDGRRAQN CIILLSKLKL SNEEIRQAIL KMDEQEDLAK BACU018469/1-1015 YLASRKVKEL SVIDGRRAQN CIILLSKLKL SNEEIRQAIL KMDEQEDLAK 751 800 ENSTTRP00000008615/1-1004 DMLEQLLKFI PEKSDIDLLE EHKHEIERMA RADRFLYEMS RIDHYQQRLQ ENSP00000381876/1-1068 DMLEQLLKFI PEKSDIDLLE EHKHEIERMA RADRFLYEMS RIDHYQQRLQ ENSBTAP00000036835/1-1097 DMLEQLLKFI PEKSDVDLLE EHKHEIERMA RADRFLYEMS RIDHYQQRLQ bmy_08563T0/1-1063 DMLEQLLKFI PEKSDIDLLE EHKHEIERMA RADRFLYEMS RIDHYQQRLQ BACU018469/1-1015 DMLEQLLKFI PEKSDIDLLE EHKHEIERMA RADRFLYEMS RIDHYQQRLQ 801 850 ENSTTRP00000008615/1-1004 ALFFKKKFQE RLAEAKPKVE AILLASRELI RSKRLAQMLE VVLAIGNFMN ENSP00000381876/1-1068 ALFFKKKFQE RLAEAKPKVE AILLASRELV RSKRLRQMLE VILAIGNFMN ENSBTAP00000036835/1-1097 ALFFKKKFQE RLAEAKPKVE AILLASRELI RSKRLARMLE VVLAIGNFMN bmy_08563T0/1-1063 ALFFKKKFQE RLAEAKPKVE AILLASRELI RSKRLARMLE VVLAIGNFMN BACU018469/1-1015 ALFFKKKFQE RLAEAKPKVE AILLASRELI RSKRLAQMLE VVLAIGNFMN 851 900 ENSTTRP00000008615/1-1004 KGQRGSAYGF RVASLNKIAD TKSSIDRNIS LLHYLIMILE KHFPDILNMP ENSP00000381876/1-1068 KGQRGGAYGF RVASLNKIAD TKSSIDRNIS LLHYLIMILE KHFPDILNMP ENSBTAP00000036835/1-1097 KGQRGGAYGF RVASLNKIAD TKSSIDRNIS LLHYLIMILE KHFPDILNMP bmy_08563T0/1-1063 KGQRGSAYGF RVASLNKIAD TKSSIDRNIS LLHYLIMILE KHFPDILNMP BACU018469/1-1015 KGQRGSAYGF RVASLNKIAD TKSSIDRNIS LLHYLIMILE KHFPDILNMP 901 950 ENSTTRP00000008615/1-1004 SELQHLPEAA K------VNL AELEKEVGNL RRGLRAVEVE LEYQKRQAWD ENSP00000381876/1-1068 SELQHLPEAA K------VNL AELEKEVGNL RRGLRAVEVE LEYQRRQVRE ENSBTAP00000036835/1-1097 SELQHLPEAA K------VNL AELEKEVGNL RRGLRAVEVE LEYQKRQVRD bmy_08563T0/1-1063 SELQHLPEAA KNLRLGRLSV LRLARTVEDV HLAFPP--QE LEYQKRQVWD BACU018469/1-1015 SELQHLPEAA K------VNL AELEKEVGNL RRGLRAVEVE LEYQKRQVWD 951 1000 ENSTTRP00000008615/1-1004 PKDRFVPVMS DFITVSSFSF SELEDQLNEA R---AKSKMH FGEQDSKMQP ENSP00000381876/1-1068 PSDKFVPVMS DFITVSSFSF SELEDQLNEA RDKFAKALMH FGEHDSKMQP ENSBTAP00000036835/1-1097 PNDKFVPVMS DFITVSSFSF SELEDQLNEA RAKFSKALMH FGEQDSKMQP bmy_08563T0/1-1063 PNDKFVPVMS DFITVSSFSF SELEDQLNEA RAKFSKALMH FGEQDSKMQP BACU018469/1-1015 PNDKFVPVMS DFITVSSFSF SELEDQLNEA RVKFSKALMH FGEQDSKMQP 1001 1050 ENSTTRP00000008615/1-1004 DEFFGIFDTF LQAFSEARQD LEAMRRRKEE EERRARMEAM LKEQRERERW ENSP00000381876/1-1068 DEFFGIFDTF LQAFSEARQD LEAMRRRKEE EERRARMEAM LKEQRERERW ENSBTAP00000036835/1-1097 DEFFGIFDAF LQAFSEARQD LEAMRRRKEE EERRARMEAM LKEQRERERW bmy_08563T0/1-1063 DEFFGIFDTF LQAFSEARQD LEAMRRRKEE EERRARMEAM LKEQRERERW BACU018469/1-1015 DEFFGIFDTF LQAFSEARQD LEAMRRRKEE EERRARMEAM LKEQRERERW 1051 1100 ENSTTRP00000008615/1-1004 QRQRKV-HAS SALDEGGEFD DLVSALRSGE VFDKDLCKLK RSRKRSGSQA ENSP00000381876/1-1068 QRQRKVLAAG SSLEEGGEFD DLVSALRSGE VFDKDLCKLK RSRKRSGSQA ENSBTAP00000036835/1-1097 QRQRKV-HAG SALEEGGEFD DLVSALRSGE VFDKDLCKLK RSRKRSGSQA bmy_08563T0/1-1063 QRQRKV-HAG SALEEGGEFD DLVSALRSGE VFDKDLCKLK RSRKRSGSQA BACU018469/1-1015 QRQRKV-HAG SALEEGGEFD DLVSALRSGE VFDKDLCKLK RSRKRSGSQA 1101 1150 ENSTTRP00000008615/1-1004 LEATRERAIN RLNY ENSP00000381876/1-1068 LEVTRERAIN RLNY ENSBTAP00000036835/1-1097 LEATRERAIN RLNY bmy_08563T0/1-1063 LEATRERAIN RLNY BACU018469/1-1015 LEATRERAIN RLNY