KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:06 2014 Check: 00 .. Name: bmy_14848T0/1-464 Len: 678 Check: 1945 Weight: 1.00 Name: ENSBTAP00000036851/1-674 Len: 678 Check: 3702 Weight: 1.00 Name: ENSP00000273317/1-676 Len: 678 Check: 5236 Weight: 1.00 Name: BACU002460/1-188 Len: 678 Check: 350 Weight: 1.00 Name: ENSTTRP00000009804/1-654 Len: 678 Check: 6500 Weight: 1.00 // 1 50 bmy_14848T0/1-464 MDKYDDLGLE ASKFIEDLNM YEASKDGLFR VDKGASNNPE FEETRRVFAT ENSBTAP00000036851/1-674 MDKYDDLGLE ASKFIEDLNM YEASKDGLFR VDKGAGNNPE FEETRRVFAT ENSP00000273317/1-676 MDKYDDLGLE ASKFIEDLNM YEASKDGLFR VDKGAGNNPE FEETRRVFAT BACU002460/1-188 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009804/1-654 ---------- ---FIEDLNM YEASKDGLFR VDKGASNNPE FEETRRVFAT 51 100 bmy_14848T0/1-464 KMAKIHL-HQ P-HQLLQEET LPRGSRGPVN GGGRLGPQAH READGGSKVT ENSBTAP00000036851/1-674 KMAKIHLQQQ QQQQLLQEET LPRASRGPIN GGARLGPPAH REAGGGSKLA ENSP00000273317/1-676 KMAKIHL-QQ QQQQLLQEET LPRGSRGPVN GGGRLGPQAR WEVV-GSKLT BACU002460/1-188 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009804/1-654 KMAKIHL-HQ P-HQLLQEET LPRGGRGPVN GGGRLGPQAH READGGSKVT 101 150 bmy_14848T0/1-464 GDGAAKPPLA ASTVAPGTAT TIAAGQPLSP PQEQRAKLCV RGARQGSQDC ENSBTAP00000036851/1-674 ADGAAKPPLA ASTVAPGTTI TVAPGQPSYP PQEQRAKLYV RGSRQGSQDC ENSP00000273317/1-676 VDGAAKPPLA ASTGAPGAVT TLAAGQPPYP PQEQRSRPYL HGTRHGSQDC BACU002460/1-188 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009804/1-654 GDGAAKPPLA ASTVAPGTAT TIAAGQPLSP PQEQRAKLCV RGARQGSQDC 151 200 bmy_14848T0/1-464 GSKESVASSE MSAFHRPGPC EDPSCLTHGD YYDNLFLASP SWGDEPAVSP ENSBTAP00000036851/1-674 GSKESMVNSE MSAFHRPGPC EDPSCLTHGD YYDNLSLAGP KWADDPGVSP ENSP00000273317/1-676 GSRESLATSE MSAFHQPGPC EDPSCLTHGD YYDNLSLASP KWGDKPGVSP BACU002460/1-188 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009804/1-654 GSKESVASSE MSAFHRLGPC EDPSCLTHGD YYDNLFLASP NWGDEPAVSP 201 250 bmy_14848T0/1-464 SIRLGVGSGW SGTPGSGPPL STPSRDHHLY QLQLSPSSSR SLQ---SSQD ENSBTAP00000036851/1-674 GIRLGVGSGW SGTPGSDPLL SKPSRDPHLY HQQLSAGSGR SLQ---SGQD ENSP00000273317/1-676 SIGLSVGSGW PSSPGSDPPL PKPCGDHPLN HRQLSLSSSR SSEGSLGGQN BACU002460/1-188 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009804/1-654 SIRLGVGSGW SGTPGSGPPL STPSRVHHLY QQQLSPSSSR SLQ---SSQD 251 300 bmy_14848T0/1-464 GGVGGHSSEK PAALWTTASS QRVSPGLPSP GPENGALP-R PAQPRTPSFS ENSBTAP00000036851/1-674 GGPGGGNSEK PAGVWTTASS QRVSPGLPSA GPENGALP-R SAQPRTPSFS ENSP00000273317/1-676 SGIGGRSSEK PTGLWSTASS QRVSPGLPSP NLENGAPAVG PVQPRTPSVS BACU002460/1-188 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009804/1-654 GAVGGHSSEK PAALWTTASS QRVSPGLPSP GPENGALP-R PAQPRTPSFS 301 350 bmy_14848T0/1-464 APLALNRSSQ GPLPRTNSGV GSEVSGMMPK PTVDPQPWFQ DGPKSYLSSS ENSBTAP00000036851/1-674 APLALNRPSQ GSLPRTNSGV GSEVSGTMPK PTVDPQPWFQ DGPKSYLSSS ENSP00000273317/1-676 APLALSCPRQ GGLPRSNSGL GGEVSGVMSK PNVDPQPWFQ DGPKSYLSSS BACU002460/1-188 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009804/1-654 APLALR--SS GPLPR-NSGV GGEVSGMMPK PXXXXXXXXX XXXXXXXXXX 351 400 bmy_14848T0/1-464 APSSSPANMD NMQLGAVPGP GPKPGCTDAG AGPKL---SL VHPVMSTLPE ENSBTAP00000036851/1-674 APSSSPASMD HMQAGALPGL GPKPGSTDPG IGPKLSPNSL VHPVMSTLPE ENSP00000273317/1-676 APSSSPAGLD GSQQGAVPGL GPKPGCTDLG TGPKLSPTSL VHPVMSTLPE BACU002460/1-188 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009804/1-654 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 401 450 bmy_14848T0/1-464 LSCKESPSGW SSDGSLGPVL PESPGSPRVR LPCQTLIPGP ELGPTAAELK ENSBTAP00000036851/1-674 LSCKEGASSW ASDGSLGPVL PETPSSPRVR LPCQTLIPGP ELGPTAAELK ENSP00000273317/1-676 LSCKEGPLGW SSDGSLGSVL LDSPSSPRVR LPCQPLVPGP ELRPSAAELK BACU002460/1-188 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009804/1-654 XXXXESPLAC SSDGS-GPVL PESPGS-RVR LPCQTLLPGR ELGPTAAELK 451 500 bmy_14848T0/1-464 LEALTQRLER EMDAHPKADY FGE------- ---------- ---------- ENSBTAP00000036851/1-674 LEALTQRLER EMDAHPKADY FGACVKCSKG VFGAGQACQA MGNLYHDACF ENSP00000273317/1-676 LEALTQRLER EMDAHPKADY FGACVKCSKG VFGAGQACQA MGNLYHDTCF BACU002460/1-188 ---------- ---------- ---------- ---------- MGNLYHDACF ENSTTRP00000009804/1-654 LEALTQRLER EMDAHPKADY FGACVKCSKG VFGAGQACQA MGNLYHDACF 501 550 bmy_14848T0/1-464 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036851/1-674 TCAACSRKLR GKAFYFVNGK VFCEEDFLYS GFQQSADRCF LCGHLIMDMI ENSP00000273317/1-676 TCAACSRKLR GKAFYFVNGK VFCEEDFLYS GFQQSADRCF LCGHLIMDMI BACU002460/1-188 TCAACSRKLR GKAFYFVNGK VFCEEDFLYS GFQQSADRCF LCGHLIMDMI ENSTTRP00000009804/1-654 TCAACSRKLR GKAFYFVNGK VFCEEDFLYS GFQQSADRCF LCGHLIMDMI 551 600 bmy_14848T0/1-464 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036851/1-674 LQALGKSYHP GCFRCVICNE CLDGVPFTVD SENKIYCVRD YHKVLAPKCA ENSP00000273317/1-676 LQALGKSYHP GCFRCVICNE CLDGVPFTVD SENKIYCVRD YHKVLAPKCA BACU002460/1-188 LQALGKSYHP GCFRCVICNE CLDGVPFTVD SENKIYCVRD YHKVLAPKCA ENSTTRP00000009804/1-654 LQALGKSYHP GCFRCVICNE CLDGVPFTVD SENKIYCVRD YHKVLAPKCA 601 650 bmy_14848T0/1-464 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036851/1-674 ACGLPILPPE GSDETIRVVS MDRDYHVECY HCEDCGLELN DEDGHRCYPL ENSP00000273317/1-676 ACGLPILPPE GSDETIRVVS MDRDYHVECY HCEDCGLELN DEDGHRCYPL BACU002460/1-188 ACGLPILPPE GSDETIRVVS MDRDYHVACY HCEDCGLELN DEDGHRCYPL ENSTTRP00000009804/1-654 ACGLPILPPE GSDETIRVVS MDRDYHVECY HCEDCGLELN DEDGHRCYPL 651 700 bmy_14848T0/1-464 ---------- ---------- -------- ENSBTAP00000036851/1-674 EDHLFCHSCH VKRLEKGPSP AALRQHHF ENSP00000273317/1-676 EDHLFCHSCH VKRLEKRPSS TALHQHHF BACU002460/1-188 EDHLFCHSCH IKRLEKGHSS TALHQHHF ENSTTRP00000009804/1-654 EDHLFCHSCH IKRLEKGHSS TALHQHHF