KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:09 2014 Check: 00 .. Name: ENSTTRP00000013478/1-329 Len: 335 Check: 8278 Weight: 1.00 Name: ENSP00000381436/1-326 Len: 335 Check: 3698 Weight: 1.00 Name: ENSBTAP00000036902/1-334 Len: 335 Check: 9032 Weight: 1.00 Name: bmy_17138T0/1-249 Len: 335 Check: 5148 Weight: 1.00 Name: BACU000068/1-332 Len: 335 Check: 1831 Weight: 1.00 // 1 50 ENSTTRP00000013478/1-329 MSCAEVMYHP QPYGAPQYLP NPVAAATCPT AYYHPAPQPG QQKKLAVYSK ENSP00000381436/1-326 MSCAEVMYHP QPYGASQYLP NPMAATTCPT AYYQPAPQPG QQKKLAVFSK ENSBTAP00000036902/1-334 MSCAEVMYHP QPYGAPQYLP NPVAAATCPT ACYHPAPQPG QQ-KLAVYSK bmy_17138T0/1-249 ---------- ---------- ---------- ---------- ---------- BACU000068/1-332 MSCAEVMYHP QPYGAPQYLP NPVAAATCPT AYYHPAPQPG QQKKLAVYSK 51 100 ENSTTRP00000013478/1-329 MQDSLEVTLP SKQEEEEEEV EEEEEEEKDQ PAEMEYLNSR CVLFTYFQGD ENSP00000381436/1-326 MQDSLEVTLP SKQEEEDEE- --EEEEEKDQ PAEMEYLNSR CVLFTYFQGD ENSBTAP00000036902/1-334 MQDSLEVTLP SKQEEEEEEE EDEEEEEKDQ PAEMEYLNSR CVLFTYFQGD bmy_17138T0/1-249 ---------- ---------- ---------- ---MEYLNSR CVLFTYFQGD BACU000068/1-332 MQDSLEVTLP SKQEEEEEED EEEEEEERDQ PAEVEYLNSR CVLFTYFQGD 101 150 ENSTTRP00000013478/1-329 IGSVVDEHFS RALGQASTLH PESAISKSKM GLTPLWRXXX XXXXXXXXXX ENSP00000381436/1-326 IGSVVDEHFS RALGQAITLH PESAISKSKM GLTPLWRDSS ALSSQRNSFP ENSBTAP00000036902/1-334 IGSVVDEHFS RALGQASTLH QESAISKSKM GLTPLWRDSS ALSSQRTSFP bmy_17138T0/1-249 IGSVVDEHFS RALGQASTLH PESAISKSKM GLTPLWRDSS ALSSQRSSFP BACU000068/1-332 IGSVVDEHFS RALGQASTLH PESAISKSKM GLTPLWRDSS ALSSQRSSFP 151 200 ENSTTRP00000013478/1-329 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000381436/1-326 TSFWTSSYQP PPAPCLGGVH PDFQVTGPPG TFSAADPSPW PGHNLHQTGP ENSBTAP00000036902/1-334 TSFWTSSYQP PPTPCLGGVH PDFQVTAPPG NFTAADPSPW PGHGLHQTGS bmy_17138T0/1-249 TSFWTSSYQP PSAPCLGGVH PDFQVTAPPG TFTAADPSPW SGHGLHQTGP BACU000068/1-332 TSFWTSSYQP PSAPCLGGVH PDFQVTAPPG TFTAADPSPW SGHGLHQTGP 201 250 ENSTTRP00000013478/1-329 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000381436/1-326 APPPAVSESW PYPLTSQVSP SYSHMHDVYM RHHHPHAHMH HRHRHHHHHH ENSBTAP00000036902/1-334 APPPPVSESW HYPLASQVSP SYGHVHDVYM RHHPPHVHHR HHHHHHHHHH bmy_17138T0/1-249 APPPPVSESW HYPLASQVSP SYSHMHDMYM RHHHPHMHHR HHHHHHHHHH BACU000068/1-332 APPPPVSESW HYPLASQVSP SYSHMHDMYM RHHHPHMHHR HHHHHHHHHH 251 300 ENSTTRP00000013478/1-329 XXXXXXXXXX XXXXXXXXXX XXXXXXXXPC DITKTDPTTV TTATSAWAGA ENSP00000381436/1-326 HPPAGSALDP SYGPLLMPSV HAARIPAPQC DITKTEPTTV TSATSAWAGA ENSBTAP00000036902/1-334 HPPAGSALDP PYGPLLMPSV RAARIAAPPC DITKTDPTTV TTATSAWAGA bmy_17138T0/1-249 HPSAGSALDP SYGPLLMPSV RAARIPAPPC DITKTDPTTV TTATSAWAGA BACU000068/1-332 HSSAGSALDP SYGPLLMPSV RAARIPAPPC DITKTDPTTV TTATSAWAGA 301 350 ENSTTRP00000013478/1-329 FHGTVDLVPS VGFDTG---- --LQHQDKSK DSPWY ENSP00000381436/1-326 FHGTVDIVPS VGFDTG---- --LQHQDKSK ESPWY ENSBTAP00000036902/1-334 FHGTVDLVPS VGFDAGEPGD FLLSIERRKM PETNH bmy_17138T0/1-249 FHGTVDLVPS VGFDTGEPGN FLLSIKEEKL MK--- BACU000068/1-332 FHGTVDLVPS VGFDTGEPGN FLLSIKEEKL MK---