KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:47:11 2014 Check: 00 .. Name: ENSBTAP00000036917/1-799 Len: 858 Check: 1341 Weight: 1.00 Name: bmy_21852T0/1-472 Len: 858 Check: 9573 Weight: 1.00 Name: BACU017796/1-632 Len: 858 Check: 5667 Weight: 1.00 Name: ENSTTRP00000015227/1-795 Len: 858 Check: 8956 Weight: 1.00 // 1 50 ENSBTAP00000036917/1-799 MSQPGPKPAA SPRPRR--AA RHTQEHVSRK TSGSPSKSGE KKGSDEKKAT bmy_21852T0/1-472 MQNIAKMPN- ---------- ---------- ---------- ---------- BACU017796/1-632 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015227/1-795 MSQPGQKPVA SPRPRRAAAA RHTQERADGK TSGSPSKSGE KKGSDEKKAT 51 100 ENSBTAP00000036917/1-799 SLGSSQLSRT QADEKALVPK VTTSSASASK SSSMNPTEAK AIPGSKQLEG bmy_21852T0/1-472 ---------- ---------- ---------- ---------- ---------- BACU017796/1-632 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015227/1-795 KLGSSQPSRT QAGGTAPVTK VTTSSASTRK SSSMNPTETK AIPVSKQLEG 101 150 ENSBTAP00000036917/1-799 PHSPNKKRHK KQAVKTEPEK KPQSSKPSVV HEKKTQEVKP KEHTEPKSLP bmy_21852T0/1-472 -YKLEAINRL KPAVKTEPEK KSQSTKPSVV HEKKTQEVKP KEHREPKSLP BACU017796/1-632 ---------- --AVKTEPEK KSQSTK---- ---------- -----PKSLP ENSTTRP00000015227/1-795 LHSPNKKRHK KQAVKTEPEK KSQSTKPSVV HEKKTQEVKP KEHTEPKSLP 151 200 ENSBTAP00000036917/1-799 KHSSDTGSKH APKEKAVSKS SEQPPSEKST KPKTKSQDKI SGGGKSTVPA bmy_21852T0/1-472 KHSSDTRSKH AYNEKAVSRS SEQPTSEKST IPKTKSQDTI SSGGKSAV-T BACU017796/1-632 KHSSDTRSKH AYNEKAVSKS SEQPTSEKST IPKTKSQDTI SSGGKSAV-T ENSTTRP00000015227/1-795 KHSSGTGSKH TYNEKAVSRP SEQPTSEKST IPETKSQDTI SSGGKSAV-T 201 250 ENSBTAP00000036917/1-799 AAAAASAEPA DKNKENKLLT SAVPAESKPS KPSGKSDMDT ALDDLIDTLG bmy_21852T0/1-472 GVAAASGKPV DKNKENKSLM SAVPVESKPS KPSGKSGMGA ALDDLIDTLG BACU017796/1-632 GVAAASGKPV D--------- ---------- ----KSGMGA ALDDLIDTLG ENSTTRP00000015227/1-795 GIAAASGKPV DENKENKSLM SAVPVESKPS EPSGKLGMDA ALDDLIDTLG 251 300 ENSBTAP00000036917/1-799 EPEEMKEDNT TYTGPEVSDP MSSTYIEELG KRESTLPPKY KELLNKEEGI bmy_21852T0/1-472 EPEETKEDNT TYTGPEVLDL MSSTYIEELG KREVTLPPKY RELLN----- BACU017796/1-632 EPEETKEDNT TYTGPEVLDL MSSTYIEELG KREVTLPPKY RELLN----- ENSTTRP00000015227/1-795 EPEETKEDDT TYTGPEVLDL MSSTYIEELG KREVTLPPKY RELLNKKEGI 301 350 ENSBTAP00000036917/1-799 AGPPPDSLKP LGPNDAIDAL SSDFTCSSPT ADAKKTEKEK STEEALKAQS bmy_21852T0/1-472 --------KP LGPDDAIDAL SSDFTYSSPT ADGKKTKKER STGEVLKAQS BACU017796/1-632 --------KP LGPDDAIDAL SSDFTYSSPA ADEKKTKKEK STGEVLKAQS ENSTTRP00000015227/1-795 TGPPPDSSKP LGPDDAIDAL SSDFTCSSPT ADGKKTKKEK STGEVLKAQS 351 400 ENSBTAP00000036917/1-799 AGVIRSAAPP QEKKRKVEKD AMTEHALEAL SASLGTRKPE PELDPSSIKE bmy_21852T0/1-472 AEVIKSAAPP KEKKRKVEED TMSDQALEAL SASLGNWKPE PELDLSSIKE BACU017796/1-632 AEVIKSAAPP KEKKRKVEED TMSDQALEAL SASLGSRKPE PELDLSSIKE ENSTTRP00000015227/1-795 AEVIKSAAPP KEKKRKVEED TMSDQALEAL SASLGSRKPE PELDLSSIKE 401 450 ENSBTAP00000036917/1-799 VDE------A KAKEEKVKK- ---------C G----EDEET VPSEYRLK-- bmy_21852T0/1-472 VNENCLTESS GGKEEGKHRA TLRASLARQC GGGDPQEXQP ISSGWELAVV BACU017796/1-632 VNE------A KAKEEKLKK- ---------C G----EDEET VPPEYRLK-- ENSTTRP00000015227/1-795 VNE------A KAKEEKLKK- ---------C G----EDEKT IPPEYRLK-- 451 500 ENSBTAP00000036917/1-799 ---------- -PATDKDGKP ---------- ---------- ----LLPEAE bmy_21852T0/1-472 AVTVLLPPLS LPVLSHWGRE VAGSRKNNHI RKNDKDLHWN KQAILFEQNY BACU017796/1-632 ---------- -PATDKDGKP ---------- ---------- ----LLPDVE ENSTTRP00000015227/1-795 ---------- -PATDKDGKP ---------- ---------- ----LLPDVE 501 550 ENSBTAP00000036917/1-799 EKPKPLSESE LIDELSEDFD QSKCKEKQSK PTEKTEASPA AAPVPVAEDV bmy_21852T0/1-472 SEIEPLSESE LIDELSEDLD RSKYKEKQSK PTEKTEESQA AAPTPVGGAV BACU017796/1-632 EKPKPLSESE LIDELSEDLD QSKCKEKQSK PTEKTEESQV AAATPVEGAV ENSTTRP00000015227/1-795 EKPKPLSESE LIDELSEDLD QSKCKEKQSK PTEKTEESQT AAPTPVEAAV 551 600 ENSBTAP00000036917/1-799 PRTSMCSVQS APPTAAPVKG MVPDDAVEAL AGSLGKKEAD PEDGKPVEDK bmy_21852T0/1-472 PRTTLCSVQS VPPPSASAQ- ---------- ---------- ---------- BACU017796/1-632 PRTTLCSVQS VPPPSATAKS MGPDDAVEAL AGSLGKKEAG PEVGKPVEDK ENSTTRP00000015227/1-795 PRTSLCCVQS APPPSASAKA MGPRDAVEAL AGSLGIKEAG PEVGKPMEDE 601 650 ENSBTAP00000036917/1-799 VKEKAKEEDR EKLGEKEETI PPDYRLEEAK DKDGKPLLPK EVKEPLPPLS bmy_21852T0/1-472 ---------- ---------- ---------- ---------- ---------- BACU017796/1-632 VKEKAKEEDR EKLGEKEETI PPDYRLEEVK DKDGKPLLPK EPKEPLPPLS ENSTTRP00000015227/1-795 VKEKAKEEDR EKLGEKEETI PPDYRLEEVK DKDGKPLLPK EPKEPLPPLS 651 700 ENSBTAP00000036917/1-799 EDVLLDALSK DFTVPSDTSS PQFEDAKLSA VVSEVVSQTP APTTQAAGPP bmy_21852T0/1-472 ---------- ---------- ---------- ---------- ---------- BACU017796/1-632 EDFLLDALSK EFAVPPRTSS LQLEDAKLSA VISEVVSQTP APTTHSAGPP ENSTTRP00000015227/1-795 EDFLLDALSK DFAVPPSTSP LQWEDAKLSA VISEVVSQTP APTNHSAGPP 701 750 ENSBTAP00000036917/1-799 PSTAQRDNKE LDDALDQLSD SLGQRQPDPD ENKPVEDKVK EKAKAEHRDK bmy_21852T0/1-472 ---------- ---------- ---------- ---------- ---------- BACU017796/1-632 PDTPRSDDKE LDDALDQLSD SLGQRQPDPD ENKPLEDKVK EKVKAEHRDK ENSTTRP00000015227/1-795 PDTPRSDDKE LDNALDQLSD SLGQRQPDPD ENKPLEDKVK EKVKAEHRDK 751 800 ENSBTAP00000036917/1-799 LGERDDTIPP KYQHLLDDNK EGTPGKPKAS EKPKASEKPA GAQDPIDALS bmy_21852T0/1-472 ---------- -----IESDS ENES------ ---------- ---------- BACU017796/1-632 PGERDDTIPP QYQHLLDDDK EGKSATP-PT KKPEASKKPA DAQDPIDALS ENSTTRP00000015227/1-795 LGERDDTLPP KYQHLLDDDK EGKSATP-PT KKPEASEKAA DAQDPIDALS 801 850 ENSBTAP00000036917/1-799 GDFDSCPSTT ETSTDTPKDK DKKPASSAEA PRNGGKAKDS TKAKEETSKP bmy_21852T0/1-472 ---------- ---------- ---------- ---------- ---------- BACU017796/1-632 EDFDSGPSTT ETSENTAKDK DKKTVSSSKA PKNGGKAKDS AKAKEETSKR ENSTTRP00000015227/1-795 GDFDSCPSPT ETSENTAKDK DKKTASSSKA PKNGGKAKDS AKAKEETSNR 851 900 ENSBTAP00000036917/1-799 KADGKSTS bmy_21852T0/1-472 -------- BACU017796/1-632 KADGKSTS ENSTTRP00000015227/1-795 KDDG----