KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:12 2014 Check: 00 .. Name: BACU005505/1-706 Len: 730 Check: 5372 Weight: 1.00 Name: bmy_17124T0/1-333 Len: 730 Check: 6544 Weight: 1.00 Name: ENSP00000308149/1-498 Len: 730 Check: 2363 Weight: 1.00 Name: ENSTTRP00000007049/1-330 Len: 730 Check: 2604 Weight: 1.00 Name: ENSBTAP00000036942/1-499 Len: 730 Check: 8308 Weight: 1.00 // 1 50 BACU005505/1-706 MLQCRPAQEF SFGPRALKDA LLSTDPALRQ LYTSAFSPAE RLFLAEAYNP bmy_17124T0/1-333 ---------- ---------- ---------- ---------- ---------- ENSP00000308149/1-498 MLQCRPAQEF SFGPRALKDA LVSTDAALQQ LYVSAFSPAE RLFLAEAYNP ENSTTRP00000007049/1-330 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036942/1-499 MLQCRPAEEF SFGPRALKDA LLSTDPALRQ LYTAAFSPAE RLFLAEAYNP 51 100 BACU005505/1-706 RRTFFCTLLI RTAFDWLLSR PEVPEDFEAF HAALAPRKQS PARKHIYLQP bmy_17124T0/1-333 ---------- ---------- ---------- ---------- ---------- ENSP00000308149/1-498 QRTLFCTLLI RTGFDWLLSR PEAPEDFQTF HASLQHRKPR LARKHIYLQP ENSTTRP00000007049/1-330 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036942/1-499 RRTLFGTLLI RTAFDWLLSR PEAPEDFQTF HAALPPRKQS LARKHIYLQP 101 150 BACU005505/1-706 IDLSEGPAGG ALLDQLRSCT EAFFLGLQVR CLPSVAAASI HCSSRPSQDS bmy_17124T0/1-333 ---------- ---------- ---------- ---------- ---------- ENSP00000308149/1-498 IDLSEEPVGS SLLHQLCSCT EAFFLGLRVK CLPSVAAASI RCSSRPSRDS ENSTTRP00000007049/1-330 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036942/1-499 IGLSEGPAGS VLLDQLRSCT EAFFLGLQVR CLPSVAAASI HCSSRPGQDP 151 200 BACU005505/1-706 DRLQLHTDGI LSFLKSSKPG DALCVLGLTL SDLYPREAWT FTFGTFLPGH bmy_17124T0/1-333 ---------- ------MQGG ---------- ---------- ---------- ENSP00000308149/1-498 DRLQLHTDGI LSFLKNNKPG DALCVLGLTL SDLYPHEAWS FTFSKFLPGH ENSTTRP00000007049/1-330 --------GI LSFLKSSKPG DALCVLGLTL SDLYPREAWT FTFGTFLPGH ENSBTAP00000036942/1-499 DRLQLHTDGI LSFLKSSKPG DALCVLGLTL SDLYPCEAWT FTFGTFLPGH 201 250 BACU005505/1-706 EVGVCSFARF SGESLQWGPS TPDP------ ----APEAPL EDRGQTVCFS bmy_17124T0/1-333 ---------- -GDLLP---- ---------- ---------- ---------- ENSP00000308149/1-498 EVGVCSFARF SGEFPKSGPS APDLALV--E AAADGPEAPL QDRGWALCFS ENSTTRP00000007049/1-330 EVGVCSFARF SGESLQRGPS TPDL------ ----APEAPL QDRGRTVCFS ENSBTAP00000036942/1-499 EVGVCSFARF SGEFLPREPS TPDLVEVEAE AAADGPEVPL QDGGQAVCFS 251 300 BACU005505/1-706 ALGMVQCCKV TCHELCHLLG LGNCRWLRCL MQGALSLDEA LRRPPDLCPI bmy_17124T0/1-333 --------QV TCHELCHLLG LGNCRWLRCL MQGALSLDEA LRRPPDL--- ENSP00000308149/1-498 ALGMVQCCKV TCHELCHLLG LGNCRWLRCL MQGALSLDEA LRRPLDL--- ENSTTRP00000007049/1-330 ALGMVQCCKV TCHELCHLLG LGNCRWLRCL MQGTLSLDEA LRRPPDL--- ENSBTAP00000036942/1-499 ALGMVQCCKV TCHELCHLLG LGNCRWLRCL MQGALRVDEA LRRPLDL--- 301 350 BACU005505/1-706 CLRKLQHVLG FKLVDRYKAP GPVPVAVTTG AHGFYSPGNP KPLRRPPDLC bmy_17124T0/1-333 ---------- ---------- ---------- ---------- ---------C ENSP00000308149/1-498 ---------- ---------- ---------- ---------- ---------C ENSTTRP00000007049/1-330 ---------- ---------- ---------- ---------- ---------C ENSBTAP00000036942/1-499 ---------- ---------- ---------- ---------- ---------C 351 400 BACU005505/1-706 PICLRKLQHV LGFKLVDRYK RLYIWTLAAA ---------G EPSVSEDTLP bmy_17124T0/1-333 PICLRKLQHV LGFKLVDRYK RLYTWTLAAA GTRPGPAA-G EPSVSEDTLP ENSP00000308149/1-498 PICLRKLQHV LGFRLIERYQ RLYTWTQAVV GTWPSQEA-G EPSVWEDTPP ENSTTRP00000007049/1-330 PICLRKLQHI LGFKLVDRYK RLYTWTLAAA GTRPGPAA-G EPSVSEDTLP ENSBTAP00000036942/1-499 PICLRKLQHL LGFRLVDRYK RLYAWTQAAA GTQPSPAAVG EPSVSEDTLP 401 450 BACU005505/1-706 CSADSGLCGE SDSEPGSGLS EPLSPDAWSH ALPAGPELEP EDGLGSLAXX bmy_17124T0/1-333 CSADSGLCGE SDSEPGSGLS EPLSPDAWSH ALPAGPELEP EDGLGSLAAA ENSP00000308149/1-498 ASADSGMCCE SDSEPGTSVS EPLTPDAGSH TFASG----P EEGLSYLAAS ENSTTRP00000007049/1-330 CSADSGLCGE SDSEPGSGLS EPLSPDAWSH AFPAGPELEP EDGLGSLAAA ENSBTAP00000036942/1-499 CSADSGLCCE SDSEPGSSLS EPLSPDAWSQ AFPAGLELDA EDGLGSLAAA 451 500 BACU005505/1-706 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17124T0/1-333 E------SPG EALAEHGRWL AACIQALERD VTEEELAR-- ---------- ENSP00000308149/1-498 EAPLPPGGPA EAIKEHERWL AMCIQALQRE VAEEDLVQ-- ---------- ENSTTRP00000007049/1-330 E------SPG EALAEHGRWL AACIQALERD VTEEELAR-- ---------- ENSBTAP00000036942/1-499 E------GPG EALAEHGRWL AACIQALERD VSEGELER-- ---------- 501 550 BACU005505/1-706 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17124T0/1-333 ---------- ---------- ---------- ---------- ---------- ENSP00000308149/1-498 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007049/1-330 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036942/1-499 ---------- ---------- ---------- ---------- ---------- 551 600 BACU005505/1-706 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17124T0/1-333 --------VD GAAPGPPAGP ALRPRRRGAA PGPGRQVLLP QAEAERSQTV ENSP00000308149/1-498 --------VD RAV------- ---------- ---------- ---------- ENSTTRP00000007049/1-330 --------VD GAV------- ---------- ---------- ---------- ENSBTAP00000036942/1-499 --------VD GAV------- ---------- ---------- ---------- 601 650 BACU005505/1-706 XXXXXXXXXX XXXXXXXXXX XXXXXXXXGD RSLATRLGWG PGSQAPREPS bmy_17124T0/1-333 QGRGVPAAPE GGGPLARPQT SSRVRRFKGQ TALADRADPT RQQAVRMGTC ENSP00000308149/1-498 ---------- --------DA LDRWEMFTGQ LP-ATRQDPP ---------- ENSTTRP00000007049/1-330 ---------- --------DA LARWDLFTGR LP-APRQDPP ---------- ENSBTAP00000036942/1-499 ---------- --------DA LAPWDLFTGR LP-ASRQDLP ---------- 651 700 BACU005505/1-706 SGRTRPHGAG AGQVPVSPAA WGSGLCYGEL RLQGPKVGPP LKGGQRGSCC bmy_17124T0/1-333 TGYA---DRP LRQT------ --TGSVSRLV R---KRVGPD TRVRPGTRQA ENSP00000308149/1-498 SSRD---SVG LRKV------ --LGDKFSSL R---RKL--- ----SARKLA ENSTTRP00000007049/1-330 CGRD---GAG LRRV------ --LGDKFSSL R---RKL--- ----SARKLS ENSBTAP00000036942/1-499 CGRD---GAG LRRV------ --LGDTFSSL R---RRL--- ----SARRPS 701 750 BACU005505/1-706 NLQGPPPPPT PSPWKGPLSA ALTAL----- bmy_17124T0/1-333 RSARAPGQ-- ---GPLSSDS GVLGRPDAAR ENSP00000308149/1-498 RAESAPRP-- ---WDGEES- ---------- ENSTTRP00000007049/1-330 RAEASPRR-- ---WKAEDN- ---------- ENSBTAP00000036942/1-499 RAESPLRR-- ---QKAEDD- ----------