KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:14 2014 Check: 00 .. Name: ENSBTAP00000036974/1-888 Len: 940 Check: 264 Weight: 1.00 Name: ENSP00000259486/1-915 Len: 940 Check: 3110 Weight: 1.00 Name: bmy_05127T0/1-741 Len: 940 Check: 7165 Weight: 1.00 Name: BACU013206/1-888 Len: 940 Check: 9485 Weight: 1.00 Name: ENSTTRP00000013217/1-914 Len: 940 Check: 5061 Weight: 1.00 // 1 50 ENSBTAP00000036974/1-888 MARRRSCQLH QVISLFTFAV GVNICLGVTA NRIKRAEGWG EGPPTVLSDS ENSP00000259486/1-915 MARRSSFQSC QIISLFTFAV GVNICLGFTA HRIKRAEGWE EGPPTVLSDS bmy_05127T0/1-741 MARRNSCQLY QVISLFTFAV GVNICLGFTA NRIKRAEGWD EGPPTVLSDS BACU013206/1-888 MARRNSCQLY QVISLFTFAV GVNICLGFTA NRIKRAEGWD EGPPTVLSDS ENSTTRP00000013217/1-914 -MTRNSCQLY QVISLFTFAV GVNICLGFTA NRIKRAEGWD EGPPTVLSDS 51 100 ENSBTAP00000036974/1-888 PSINISGSCK GRCFELQEAG PPDCRCDNLC KSYSSCCLDF DELCLKTAGG ENSP00000259486/1-915 PWTNISGSCK GRCFELQEAG PPDCRCDNLC KSYTSCCHDF DELCLKTARG bmy_05127T0/1-741 PWTNTSGSCK GRCFELQEVG PPDCRCDNLC KSYSSCCHDF DELCLKT--- BACU013206/1-888 PWTNTSGSCK GRCFELQEVG PPDCRCDNLC KSYSSCCHDF DELCLKTAGG ENSTTRP00000013217/1-914 PWTNTSGSCK GRCFELQEVG PPDCRCDNLC KSYSSCCHDF DELCLKTAGG 101 150 ENSBTAP00000036974/1-888 WECTKDRCGE VRNEDHACHC SEDCLARGDC CTNYQVVCKG ESHWVDDDCE ENSP00000259486/1-915 WECTKDRCGE VRNEENACHC SEDCLARGDC CTNYQVVCKG ESHWVDDDCE bmy_05127T0/1-741 ---------- ---------- ---------- ---------G ESHWVDDDCE BACU013206/1-888 WECTKDRCGE VRNEDNACHC SEDCLARGDC CTNYQVVCKG ESHWVDDDCE ENSTTRP00000013217/1-914 WECTKDRCGE VRNEDNACHC SEDCLAKGDC CTNYQVVCKG ESHWVDDDCE 151 200 ENSBTAP00000036974/1-888 EIKTPECPAG FVRPPLIIFS VDGFRASYMK KGSKVMPNIE KLRSCGTHSP ENSP00000259486/1-915 EIKAAECPAG FVRPPLIIFS VDGFRASYMK KGSKVMPNIE KLRSCGTHSP bmy_05127T0/1-741 EIKAPECPAG FVRPPLIIFS VDGFRASYMK KGSKVMPNIE KLRSCGTHSP BACU013206/1-888 EIKAPECPAG FVRPPLIIFS VDGFRASYMK KGSKVMPNIE KLRSCGTHSP ENSTTRP00000013217/1-914 EIKAPECPAG FVRPPLIIFS VDGFRASYMK KGSKVMPNIE KLRSCGTHSP 201 250 ENSBTAP00000036974/1-888 YMRPVYPTKT FPNLYTLATG LYPESHGIVG NSMYDPVFDA HFNLRGREKF ENSP00000259486/1-915 YMRPVYPTKT FPNLYTLATG LYPESHGIVG NSMYDPVFDA TFHLRGREKF bmy_05127T0/1-741 YMRPVYPTKT FPNLYTLATG LYPESHGIVG NSMYDPVFDA TFHLRGREKF BACU013206/1-888 YMRPVYPTKT FPNLYTLATG LYPESHGIVG NSMYDPVFDA TFHLRGREKF ENSTTRP00000013217/1-914 YMRPVYPTKT FPNLYTLATG LYPESHGIVG NSMYDPVFDA TFHLRGREKF 251 300 ENSBTAP00000036974/1-888 NHRWWGGQPL WITATKQGVI AGTFFWPVVI PHERRILTIL QWLTLPDHER ENSP00000259486/1-915 NHRWWGGQPL WITATKQGVK AGTFFWSVVI PHERRILTIL QWLTLPDHER bmy_05127T0/1-741 NHRWWGGQPL WITATKQGVK AGTFFWSVMI PHERRILTIL QWLTLPDNER BACU013206/1-888 NHRWWGGQPL WITATKQGVK AGTFFWSVMI PHERRILTIL QWLTLPDDER ENSTTRP00000013217/1-914 NHRWWGGQPL WITATKQGVK AGTFFWSVMI PHERRILTIL QWLTLPDNER 301 350 ENSBTAP00000036974/1-888 PSVYAFYSEQ PDFSGHKYGP FGPE------ ---------- ---------- ENSP00000259486/1-915 PSVYAFYSEQ PDFSGHKYGP FGPEESSYGS PFTPAKRPKR KVAPKRRQER bmy_05127T0/1-741 PSVYAFYSEQ PDFSGHKYGP FGPE------ ---------- ---------- BACU013206/1-888 PSVYAFYSEQ PDFSGHKYGP FGPE------ ---------- ---------- ENSTTRP00000013217/1-914 PSVYAFYSEQ PDFSGHKYGP FGPEDSSYGS PFTPAKRPKR KVTPKRRQER 351 400 ENSBTAP00000036974/1-888 ---------- ---------- ------MTNP LRDIDKTVGQ LMDGLKQLKL ENSP00000259486/1-915 PVAPPKKRRR KIHRMDHYAA ETRQDKMTNP LREIDKIVGQ LMDGLKQLKL bmy_05127T0/1-741 ---------- ---------- ------MTNP LRDIDKTVGQ LMDGLKQLKL BACU013206/1-888 ---------- ---------- ------MTNP LRDIDKTVGQ LMDGLKQLKL ENSTTRP00000013217/1-914 PVTPPKKRRR KLHRMDHYAA ETRQDKMTNP LRDIDKTVGQ LMDGLKQLKL 401 450 ENSBTAP00000036974/1-888 HRCVNVIFVG DHGMEDVTCD RTEFLSNYLT NVDDIILVPG TLGRIRPKFN ENSP00000259486/1-915 HRCVNVIFVG DHGMEDVTCD RTEFLSNYLT NVDDITLVPG TLGRIRSKFS bmy_05127T0/1-741 HRCVNVIFVG DHD------- ---------- ---------- ---------- BACU013206/1-888 HRCVNVIFVG DHGMEDVTCD RTEFLSNYLT NVDDITLVPG TLGRIRPKFS ENSTTRP00000013217/1-914 HRCVNVIFVG DHGMEDVTCD RTEFLSNYLT NVDDITLVPG TLGRIRPKFS 451 500 ENSBTAP00000036974/1-888 NHAKYDPKVI IANLTCKKPD QHFKPYLKQH LPKRLHYANN RRIEDVHLLV ENSP00000259486/1-915 NNAKYDPKAI IANLTCKKPD QHFKPYLKQH LPKRLHYANN RRIEDIHLLV bmy_05127T0/1-741 -----DPKVI IANLTCKKPD QHFKPYMKQH LPKRLHYANN RRIEDIHLLV BACU013206/1-888 NNAKYDPKVI IANLTCKKPD QHFKPYMKQH LPKRLHYANN RRIEDIHLLV ENSTTRP00000013217/1-914 NNAKYDPKVI IANLTCKKPD QHFKPYMKQH LPKRLHYANN RRIEDIHLLV 501 550 ENSBTAP00000036974/1-888 ERRWHVARKP LEVYKKPSGK CFFQGDHGFD NKVNSMQTVF VGYGPTFKYK ENSP00000259486/1-915 ERRWHVARKP LDVYKKPSGK CFFQGDHGFD NKVNSMQTVF VGYGSTFKYK bmy_05127T0/1-741 DRRWHVARKP LDVYKKPSGK CFFQGDHGFD NKVNSMQTVF VGYGPTFKYK BACU013206/1-888 DRRWHVARKP LDVYKKPSGK CFFQGDHGFD NKVNSMQTVF VGYGPTFKYK ENSTTRP00000013217/1-914 DRRWHVARKP LDVYKKPSGK CFFQGDHGFD NKVNSMQTVF VGYGPTFKYK 551 600 ENSBTAP00000036974/1-888 TKVPPFENIE LYNVMCDLLG LKPAPNNGTH GSLNHLLRTN TFRPTVPEEV ENSP00000259486/1-915 TKVPPFENIE LYNVMCDLLG LKPAPNNGTH GSLNHLLRTN TFRPTMPEEV bmy_05127T0/1-741 TKVPPFENIE LYNVMCDLLG LKPAPNNGTH GSLNHLLRTS TFRPTMPEEV BACU013206/1-888 TKVPPFENIE LYNVMCDLLG LKPAPNNGTH GSLNHLLRTN TFRPTMPEEV ENSTTRP00000013217/1-914 TKVPPFENIE LYNVMCDLLG LKPAPNNGTH GSLNHLLRTN TFRPTMPEEV 601 650 ENSBTAP00000036974/1-888 TRPNYPGVMY LQSDFDLGCT CDDKAEPKNK LDELNKHLHI KESTEAETRK ENSP00000259486/1-915 TRPNYPGIMY LQSDFDLGCT CDDKVEPKNK LDELNKRLHT KGSTE----- bmy_05127T0/1-741 TRPNYPGIMY LQSDFDLGCT CDDKRD-TSS MDGLQCFIGL ---------- BACU013206/1-888 TRPNYPGIMY LQSDFDLGCT CDDKVEPKNK LDELNKRLHI KGSTEAETRK ENSTTRP00000013217/1-914 TRPSYPGIMY LQSDFDLGCT CDDKVEPKNK LDELNKRLHI KGSTE----- 651 700 ENSBTAP00000036974/1-888 FRGSKNEIKE NVNGNFEPRK ERHLLYGRPA VLYRTRYDIL YHTDFESGYS ENSP00000259486/1-915 ---------- ---------- ERHLLYGRPA VLYRTRYDIL YHTDFESGYS bmy_05127T0/1-741 ---------- ---------- ---------- -------DMI -------SYI BACU013206/1-888 FRGSKNEIKE NVNGNFEPRK ERHLLYGRPA VLYRTRYDIL YHTDFESSYS ENSTTRP00000013217/1-914 ---------- ---------- ERHLLYGRPA VLYRTRYDIL YHTDFESSYS 701 750 ENSBTAP00000036974/1-888 EIFLMPLWTS YTVSKQADVS DIPAHLTNCV RPDVRVSPSF SQSCLAYKND ENSP00000259486/1-915 EIFLMPLWTS YTVSKQAEVS SVPDHLTSCV RPDVRVSPSF SQNCLAYKND bmy_05127T0/1-741 TLTLKAV--- -----TAEVS GIPEHLTNCV RPDVRVSPSF SQSCLAYKND BACU013206/1-888 EIFLMPLWTS YTVSKQAEVS GIPEHLTNCV RPDVRVSPSF SQSCLAYKND ENSTTRP00000013217/1-914 EIFLMPLWTS YTVSKQAEVS GIPEHLTNCV RPDVRVSPSF SQSCLAYKND 751 800 ENSBTAP00000036974/1-888 KQMSYGFLFP PYLSSSPEAK YDAFLVTNMV PMYPAFKRIW NYFQRVLVKK ENSP00000259486/1-915 KQMSYGFLFP PYLSSSPEAK YDAFLVTNMV PMYPAFKRVW NYFQRVLVKK bmy_05127T0/1-741 KQMSYGFLFP PYLSSLPEAK YDAFLVTNMV PMYPAFKRVW NYFQRVLVKK BACU013206/1-888 KQMSYGFLFP PYLSSLPEAK YDAFLVTNMV PMYPAFKRVW NYFQRVLVKK ENSTTRP00000013217/1-914 KQMSYGFLFP PYLSSLPETK YDAFLVTNMV PMYPAFKRVW NYFQRVLVKK 801 850 ENSBTAP00000036974/1-888 YASERNGVNV ISGPIFDYDY DGLHDTQDKI KQYVEGSSVP VPTHYYSILT ENSP00000259486/1-915 YASERNGVNV ISGPIFDYDY DGLHDTEDKI KQYVEGSSIP VPTHYYSIIT bmy_05127T0/1-741 YASERNGVNV ISGPIFDYDY DGLHDTQDKI KQYVEGSSIP VPTHYYSIIT BACU013206/1-888 YASERNGVNV ISGPIFDYDY DGLHDTQDKI KQYVEGSSIP VPTHYYIILT ENSTTRP00000013217/1-914 YASERNGVNV ISGPIFDYDY DGLHDTQDKI KQYVEGSSIP VPTHYYSIIT 851 900 ENSBTAP00000036974/1-888 SCLDFTQPAD RCDGPLSVSA FVLPHRPDND ESCNSSEDES KWVEELLKMH ENSP00000259486/1-915 SCLDFTQPAD KCDGPLSVSS FILPHRPDNE ESCNSSEDES KWVEELMKMH bmy_05127T0/1-741 SCLDFTQPAD KCDGPLSVSS FILPHRPDND ESCNSSEDES KWVEELIKMH BACU013206/1-888 SCLDFTQPAD KCDGPLSVSS FILPHRPDND ESCNSSEDES KWVEELIKMH ENSTTRP00000013217/1-914 SCLDFTQPAD KCDGPLSVSS FVLPHRPDND ESCNSSEDES KWVEELIKMH 901 950 ENSBTAP00000036974/1-888 TARVRDIEHL TSLDFFRKTS RSYPEILTLK TYLQTYESEI ENSP00000259486/1-915 TARVRDIEHL TSLDFFRKTS RSYPEILTLK TYLHTYESEI bmy_05127T0/1-741 TARVRDIEHL TSLDFFRKTS RSYPEILTLK TYLHTYESEI BACU013206/1-888 TARVRDIEHL TSLDFFRKTS RSYPEILTLK TYLHTYESEI ENSTTRP00000013217/1-914 TARVRDIEHL TSLDFFRKTS RSYPEILTLK TYLHTYESEI