KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:17 2014 Check: 00 .. Name: ENSP00000350896/1-987 Len: 987 Check: 4816 Weight: 1.00 Name: ENSBTAP00000037070/1-987 Len: 987 Check: 227 Weight: 1.00 Name: bmy_16124T0/1-705 Len: 987 Check: 8733 Weight: 1.00 Name: ENSTTRP00000010523/1-980 Len: 987 Check: 4273 Weight: 1.00 Name: BACU012068/1-987 Len: 987 Check: 3171 Weight: 1.00 // 1 50 ENSP00000350896/1-987 MELRVLLCWA SLAAALEETL LNTKLETADL KWVTFPQVDG QWEELSGLDE ENSBTAP00000037070/1-987 MELRALLCWA SLAAALEETL LNTKLETADL KWVTFPQADG QWEELSGLDE bmy_16124T0/1-705 MELRALLCWA SLVAALEETL LNTKLETADL KWVTFPQVEG QWEELSGLDE ENSTTRP00000010523/1-980 MELRALLCWA SLVAALEETL LNTKLETADL KWVTFPQVEG QWEELSGLDE BACU012068/1-987 MELRALLCWA SLVAALEETL LNTKLETADL KWVTFPQVEG QWEELSGLDE 51 100 ENSP00000350896/1-987 EQHSVRTYEV CDVQRAPGQA HWLRTGWVPR RGAVHVYATL RFTMLECLSL ENSBTAP00000037070/1-987 EQHSVRTYEV CDMQRAPGLA HWLRTGWVPR RGAVHVYATL RFTMLECLSL bmy_16124T0/1-705 EQHSVRTYEV CDVQRAPGLA HWLRTGWVPR RGAVHVYATL RFTMLECLSL ENSTTRP00000010523/1-980 EQHSVRTYEV CDVQRAPGLA HWLRTGWVPR RGAVHVYATL RFTMLECLSL BACU012068/1-987 EQHSVRTYEV CDVQRAPGLA HWLRTGWVPR RGAVHVYATL RFTMLECLSL 101 150 ENSP00000350896/1-987 PRAGRSCKET FTVFYYESDA DTATALTPAW MENPYIKVDT VAAEHLTRKR ENSBTAP00000037070/1-987 PRAGRSCKET FTVFYFESDA DTATAHTPAW MENPYIKVDT VAAEHLTRKR bmy_16124T0/1-705 PRAGRSCKET FTVFYFESDA DTATAHTPAW MENPYIKVDT VAAEHLTRKR ENSTTRP00000010523/1-980 PRAGRSCKET FTVFYFESDA DTATAHTPAW MENPYIKVDT VAAE-LTRKR BACU012068/1-987 PRAGRSCKET FTVFYFESDA DTATAHTPAW MENPYIKVDT VAAEHLTRKR 151 200 ENSP00000350896/1-987 PGAEATGKVN VKTLRLGPLS KAGFYLAFQD QGACMALLSL HLFYKKCAQL ENSBTAP00000037070/1-987 PGAEATGKVN VKTLRLGPLT KAGFYLAFQD QGACMALLSL HLFYKKCAQQ bmy_16124T0/1-705 PGAEATGKVN VKTLRLGPLT KAGFYLAFQD QGACMALLSL HLFYKKCAQL ENSTTRP00000010523/1-980 PG-EATGKVN VKTLRLGPLT K-GFYL-FQE QG-CMALS-- HLFYKKCAQL BACU012068/1-987 PGAEATGKVN IKTLRLGPLT KAGFYLAFQD QGACMALLSL HLFYKKCAQL 201 250 ENSP00000350896/1-987 TVNLTRFPET VPRELVVPVA GSCVVDAVPA PGPSPSLYCR EDGQWAEQPV ENSBTAP00000037070/1-987 TVNLTYFPET VPRELVVPVA GSCVADAMPA PGPSPSLYCR EDGQWAEQPV bmy_16124T0/1-705 TVNLTRFPET VPRELVVPVA GSCVADAVPA PGPSPSLYCR EDGQWAEQPV ENSTTRP00000010523/1-980 TVNLTCFPET VPRELVVPVA GSCVADAVPA PGPSPSLYCR EDGQWAEQPV BACU012068/1-987 TVNLTRFPET VPRELVVPVA GRGVADAVPA PGPSPSLYCR EDGQWAEQPV 251 300 ENSP00000350896/1-987 TGCSCAPGFE AAEGNTKCRA CAQGTFKPLS GEGSCQPCPA NSHSNTIGSA ENSBTAP00000037070/1-987 TGCSCNAGFE AAEGNTKCRA CAQGTFKPLS GEGSCQPCPA NSHSNAIGSS bmy_16124T0/1-705 TGCSCAPGFE AAEGNTRCRA CAQGTFKPLS GEGSCQPCPA NSHSNTIGSP ENSTTRP00000010523/1-980 TGCSCAPGFE AAEGNTRCRA CAQGTFKPLS GEGSCQPCPA NSHSNTIGSP BACU012068/1-987 TGCSCAPGFE AAEGNTRCRA CAQGTFKPLS GEGSCQPCPA NSHSNTIGSP 301 350 ENSP00000350896/1-987 VCQCRVGYFR ARTDPRGAPC TTPPSAPRSV VSRLNGSSLH LEWSAPLESG ENSBTAP00000037070/1-987 ICQCRIGYFR ASTDPRSAPC TTPPSAPRSV VPRLNGSALR LEWSAPLESG bmy_16124T0/1-705 VCQCRIGYFR ARTDPRGAPC TTPPSAPRSV VPRLNGSSLR LEWSAPLESG ENSTTRP00000010523/1-980 VCQCRIGYFR ARTDPRGAPC TTPPSAPRSV VPRLNGSSLR LEWSAPLESG BACU012068/1-987 VCQCRIGYFR ARTDPRGAPC TTPPSAPRSV VPRLNGSSLR LEWSAPLESG 351 400 ENSP00000350896/1-987 GREDLTYALR CRECRPGGSC APCGGDLTFD PGPRDLVEPW VVVRGLRPDF ENSBTAP00000037070/1-987 GREDLTYALR CRECRPGGSC TPCGGDLTFD PGPRDLVEPW VAIRGLRPDV bmy_16124T0/1-705 GREDLTYALR CRECRPGGSC TPCGGDLTFD PGPRDLVEPW VAIRGLRPDF ENSTTRP00000010523/1-980 GREDLTYALR CRECRPGGSC TPCGGDLTFD PGPRDLMEPW VAIRGLRPDF BACU012068/1-987 GREDLTYALR CRECRPGGSC TPCGGDLTFD PGPRDLVEPW VAIRGLRPDF 401 450 ENSP00000350896/1-987 TYTFEVTALN GVSSLATGPV PFEPVNVTTD REVPPAVSDI RVTRSSPSSL ENSBTAP00000037070/1-987 TYTFEVTALN GVSSLASGPV PFEAVNVTTD REVPPPVSDI RVTRSSPSSL bmy_16124T0/1-705 TYTFEVTAVN GVSSLASGPV PFEAVNVTTD REVPPPVSDI RVTRSSPSSL ENSTTRP00000010523/1-980 TYTFEVTAVN GVSSLASGPV PFEAVNVTTD REVPPPVSDI RVTRSSPSSL BACU012068/1-987 TYTFEVTAVN GVSSLASGPV PFEAVNVTTD REVPPPVSDI RVTRSSPSSL 451 500 ENSP00000350896/1-987 SLAWAVPRAP SGAVLDYEVK YHEKGAEGPS SVRFLKTSEN RAELRGLKRG ENSBTAP00000037070/1-987 SLAWAVPRAP SGAVLDYEVK YHEKGAEGPS SVRFLKTSEN RAELRGLKRG bmy_16124T0/1-705 SLAWAVPRAP SGA------- ----GAEGPS SVRFLKTSEN RAELRGLKRG ENSTTRP00000010523/1-980 SLAWAVPRAP SGAVLDYEVK YHEKGAEGPS SVRFLKTSEN RAELRGLKRG BACU012068/1-987 SLAWAVPRAP SGAVLDYEVK YHEKGAEGPS SVRFLKTSEN RAELRGLKRG 501 550 ENSP00000350896/1-987 ASYLVQVRAR SEAGYGPFGQ EHHSQTQLDE SEGWREQLAL IAGTAVVGVV ENSBTAP00000037070/1-987 ASYLVQVRAR SEAGYGPFGQ EHHSQTQLDE NEAWREQLAL IAGTAVVGVV bmy_16124T0/1-705 ASYLVQVRAR SEAGYGPFGQ EHHSQTQLDE NESWREQLAL IAGTAVVGVV ENSTTRP00000010523/1-980 ASYLVQVRAR SEAGYGPFGQ EHHSQTQLDE NESWREQLAL IAGTAVVGAV BACU012068/1-987 ASYLVQVRAR SEAGYGPFGQ EHHSQTQLDE SESWREQLAL IAGTAVVGVV 551 600 ENSP00000350896/1-987 LVLVVIVVAV LCLRKQSNGR EAEYSDKHGQ YLIGHGTKVY IDPFTYEDPN ENSBTAP00000037070/1-987 LVFVVIVIAV LCLRKQSNGR EAEYSDKHAQ YLIGHGTKVY IDPFTYEDPN bmy_16124T0/1-705 LVLVVIVIAV LCLRKQSNGR EAEYSDKHGQ YLIGHGTKVY IDPFTYEDPN ENSTTRP00000010523/1-980 LVLVVVVIAV LCLRKQSNGR EAEYSDKHGQ YLIGHGTKVY IDPFTYEDPN BACU012068/1-987 LVLVVIVIAV LCLRKQSNGR EAEYSDKHGQ YLIGHGTKVY IDPFTYEDPN 601 650 ENSP00000350896/1-987 EAVREFAKEI DVSYVKIEEV IGAGEFGEVC RGRLKAPGKK ESCVAIKTLK ENSBTAP00000037070/1-987 EAVREFAKEI DVSYVKIEEV IGAGEFGEVC RGRLKAPGKK ESCVAIKTLK bmy_16124T0/1-705 EAVREFAKEI DVSYVKIEEV IGAGP----- ----RTPS-- ---------- ENSTTRP00000010523/1-980 EAVREFAKEI DVSYVKIEEV IGAGEFGEVC RGRLKAPGKK ESCVAIKTLK BACU012068/1-987 EAVREFAKEI DVSYVKIEEV IGAGEFGEVC RGRLKAPGKK ESCVAIKTLK 651 700 ENSP00000350896/1-987 GGYTERQRRE FLSEASIMGQ FEHPNIIRLE GVVTNSMPVM ILTEFMENGA ENSBTAP00000037070/1-987 GGYTERQRRE FLSEASIMGQ FEHPNIIRLE GVVTNSVPVM ILTEFMENGA bmy_16124T0/1-705 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010523/1-980 GGYTERQRRE FLSEASIMGQ FEHPNIIRLE GVVTNSVPVM ILTEFMENGA BACU012068/1-987 GGYTERQRRE FLSEASIMGQ FEHPNIIRLE GVVTNSVPVM ILTEFMENGA 701 750 ENSP00000350896/1-987 LDSFLRLNDG QFTVIQLVGM LRGIASGMRY LAEMSYVHRD LAARNILVNS ENSBTAP00000037070/1-987 LDSFLRLNDG QFTVIQLVGM LRGIASGMRY LAEMSYVHRD LAARNILVNS bmy_16124T0/1-705 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010523/1-980 LDSFLRLNDG QFTVIQLVGM LRGIASGMRY LAEMSYVHRD LAARNILVNS BACU012068/1-987 LDSFLRLNDG QFTVIQLVGM LRGIASGMRY LAEMSYVHRD LAARNILVNS 751 800 ENSP00000350896/1-987 NLVCKVSDFG LSRFLEENSS DPTYTSSLGG KIPIRWTAPE AIAFRKFTSA ENSBTAP00000037070/1-987 NLVCKVSDFG LSRFLEENSS DPTYTSSLGG KIPIRWTAPE AIAFRKFTSA bmy_16124T0/1-705 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010523/1-980 NLVCKVSDFG LSRFLEENSS DPTYTSSLGG KIPIRWTAPE AIAFRKFTSA BACU012068/1-987 NLVCKVSDFG LSRFLEENSS DPTYTSSLGG KIPIRWTAPE AIAFRKFTSA 801 850 ENSP00000350896/1-987 SDAWSYGIVM WEVMSFGERP YWDMSNQDVI NAIEQDYRLP PPPDCPTSLH ENSBTAP00000037070/1-987 SDAWSYGIVM WEVMSFGERP YWDMSNQDVI NAIEQDYRLP PPPDCPTSLH bmy_16124T0/1-705 ---WISG--- ---------- ---------- ---------- -------SLT ENSTTRP00000010523/1-980 SDAWSYGIVM WEVMSFGERP YWDMSNQDVI NAIEQDYRLP PPPDCPTSLH BACU012068/1-987 SDAWSYGIVM WEVMSFGERP YWDMSNQDVI NAIEQDYRLP PPPDCPTSLH 851 900 ENSP00000350896/1-987 QLMLDCWQKD RNARPRFPQV VSALDKMIRN PASLKIVARE NGGASHPLLD ENSBTAP00000037070/1-987 QLMLDCWQKD RNARPRFPQV VSALDKMIRN PASLKIVARE NGGASHPLLD bmy_16124T0/1-705 TQLLALW--- ---------- ---------- ---------- ---------- ENSTTRP00000010523/1-980 QLMLDCWQKD RNARPRFPQV VSALDKMIRN PASLKIVARE NGGASHPLLD BACU012068/1-987 QLMLDCWQKD RNARPRFPQV VSALDKMIRN PASLKIVARE NGGASHPLLD 901 950 ENSP00000350896/1-987 QRQPHYSAFG SVGEWLRAIK MGRYEESFAA AGFGSFELVS QISAEDLLRI ENSBTAP00000037070/1-987 QRQPHYSAFG SVGEWLRAIK MGRYEESFAA AGFGSFELVS QISTEDLLRI bmy_16124T0/1-705 ---------- ----WLRAIK MGRYEESFAA AGFGSFELVS QISTEDLLRI ENSTTRP00000010523/1-980 QRQPHYSAFG SVGEWLRAIK MGRYEESFAA AGFGSFELVS QISTEDLLRI BACU012068/1-987 QRQPHYSAFG SVGEWLRAIK MGRYEESFAA AGFGSFELVS QISTEDLLRI 951 1000 ENSP00000350896/1-987 GVTLAGHQKK ILASVQHMKS QAKPGTPGGT GGPAPQY ENSBTAP00000037070/1-987 GVTLAGHQKK ILASVQHMKS QAKPGAPGGS GAPAPQY bmy_16124T0/1-705 GVTLAGHQKK ILASVQHMKS QAKPGASGGS GAPAPQY ENSTTRP00000010523/1-980 GVTLAGHQKK ILASVQHMKS QAKPGASGGS GAPAPQY BACU012068/1-987 GVTLAGHQKK ILASVQHMKS QAKPGASGGS GAPAPQY