KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:19 2014 Check: 00 .. Name: ENSBTAP00000037103/1-873 Len: 1078 Check: 7659 Weight: 1.00 Name: ENSP00000260128/1-871 Len: 1078 Check: 1885 Weight: 1.00 Name: bmy_17012T0/1-623 Len: 1078 Check: 4576 Weight: 1.00 Name: BACU011129/1-1071 Len: 1078 Check: 2949 Weight: 1.00 Name: ENSTTRP00000010737/1-869 Len: 1078 Check: 3468 Weight: 1.00 // 1 50 ENSBTAP00000037103/1-873 MKYSCCTLVL AVLGTQLLGS FSSSIRSPRF RGRIQQERKN IRPNIILVLT ENSP00000260128/1-871 MKYSCCALVL AVLGTELLGS LCSTVRSPRF RGRIQQERKN IRPNIILVLT bmy_17012T0/1-623 ---------- ---------- ---------- ---------- ---------- BACU011129/1-1071 MKYSCCALVL AVLGTQLLGS LGSTIRSPRF RGRIQQERKN IRPNIILVLT ENSTTRP00000010737/1-869 MKYSCCALVL AMLGTQLLGS LGSTIRSPRF RGRIQQERKN IRPNIILVLT 51 100 ENSBTAP00000037103/1-873 DDQDVELGSL QVLKKTNKAI FKGGRTSDGS FSASPLILKK KSSQMKGAIH ENSP00000260128/1-871 DDQDVELGSL QVMNKTRKIM EHGGATFINA FVTTPMCCPS RSSMLTGKYV bmy_17012T0/1-623 ---------- ---------- ---------- ---------- ---------- BACU011129/1-1071 DDQDVELGSL QVMNKTRKIM EREGATFTNA FVTTPMCCPS RSSMLTGKYV ENSTTRP00000010737/1-869 DDQDVELGSL QVMNKTRKIM EREGATFTNA FVTTPMCCPS RSSMLTGKYV 101 150 ENSBTAP00000037103/1-873 LNHSCCPENS NCLNSPPTWQ IFYQDHTQLP QYLRTTGRRV TFFGKYLNEY ENSP00000260128/1-871 HNHNVYTNNE NC--SSPSWQ AMHEPRT-FA VYLNNTGYRT AFFGKYLNEY bmy_17012T0/1-623 ---------- ---------- ---------- ---------- --MGNLLSR- BACU011129/1-1071 HNHNIYTNNE NC--SSPSWQ AVHEPRT-FA VYLNSTGYRT AFFGKYLNEY ENSTTRP00000010737/1-869 HNHNTYTNNE NC--SSPPWQ AVHEPRT-FA VYLNSTGYRT AFFGKYLNEY 151 200 ENSBTAP00000037103/1-873 NGSYIPPGWR EWLGLIKNSR FYNYTVCRNG IKEKHGFDYA KDYFTDLITN ENSP00000260128/1-871 NGSYIPPGWR EWLGLIKNSR FYNYTVCRNG IKEKHGFDYA KDYFTDLITN bmy_17012T0/1-623 ---------- ---------- ---------- ---------- ---------- BACU011129/1-1071 NGSYIPPGWR EWLGLIKNSR FYNYTVCRNG IKEKHGFDYA KDYFTDLITN ENSTTRP00000010737/1-869 NGSYIPPGWR EWLGLIKNSR FYNYTVCRNG IKEKHGFDYA KDYFTDLITN 201 250 ENSBTAP00000037103/1-873 ESINYFKMSK RMYPHRPIMM VISHAAPHGP EDSAPQFSEL YPNASQHITP ENSP00000260128/1-871 ESINYFKMSK RMYPHRPVMM VISHAAPHGP EDSAPQFSKL YPNASQHITP bmy_17012T0/1-623 ---------- ---------- ---------- ---------- ---------- BACU011129/1-1071 ESINYFKMSK RMYPHRPIMM VISHAAPHGP EDSAPQFSKL YPNASQHITP ENSTTRP00000010737/1-869 ESINYFKMSK RMYPHRPIMM VISHAAPHGP EDSAPQFSKL YPNASQHITP 251 300 ENSBTAP00000037103/1-873 SYNYAPNMDK HWIMQYTGPM LPIHMEFTNV LHRKRLQTLM SVDDSVERLY ENSP00000260128/1-871 SYNYAPNMDK HWIMQYTGPM LPIHMEFTNI LQRKRLQTLM SVDDSVERLY bmy_17012T0/1-623 ---------- -WLLQ----- ---------- ---------- ---------- BACU011129/1-1071 SYNYAPNMDK HWIMQYTGPM LPIHMEFTNV LHRKRLQTLM SVDDSVERLY ENSTTRP00000010737/1-869 SYNYAPNMDK HWIMQYTGPM LPIHMEFTNV LHRKRLQTLM SVDDSVERLY 301 350 ENSBTAP00000037103/1-873 NMLVETGELE NTYIIYTADH GYHIGQFGLV KGKSMPYDFD IRVPFFIRGP ENSP00000260128/1-871 NMLVETGELE NTYIIYTADH GYHIGQFGLV KGKSMPYDFD IRVPFFIRGP bmy_17012T0/1-623 ---------- ---------- ---------- ---------- ---------- BACU011129/1-1071 NMLVETGELE NTYIIYTADH GYHIGQFGLV KGKSMPYDFD IRVPFFIRGP ENSTTRP00000010737/1-869 NMLVETGELE NTYIIYTADH GYHIGQFGLV KGKSMPYDFD IRVPFFIRGP 351 400 ENSBTAP00000037103/1-873 SVEPGSIVPQ IVLNIDLAPT ILDIAGLDAP PDIDGKSVLK LLDQEKPGNR ENSP00000260128/1-871 SVEPGSIVPQ IVLNIDLAPT ILDIAGLDTP PDVDGKSVLK LLDPEKPGNR bmy_17012T0/1-623 ---------- ---------- ---------- ---------- ---------- BACU011129/1-1071 SVEPGSIVPQ IVLNIDLAPT ILDIAGLDAP PDIDGKSVLK LLDQEKPGNR ENSTTRP00000010737/1-869 SVEPGSIVPQ IVLNIDLAPT ILDIAGLDAP PDIDGKSVLK LLDQEKPGNR 401 450 ENSBTAP00000037103/1-873 FRTNKKVKIW RDTFLVERGK FLRKKEESNK NIQQSNHLPK YERVKELCQQ ENSP00000260128/1-871 FRTNKKAKIW RDTFLVERGK FLRKKEESSK NIQQSNHLPK YERVKELCQQ bmy_17012T0/1-623 ---------- ---------- ---------- ---------- ---------- BACU011129/1-1071 FRTNKKAKIW RDTFLVERGK FLRKKEESNK NIQQSNHLPK YERVKELCQQ ENSTTRP00000010737/1-869 FRTNKKAKIW RDTFLVERGK LLRKKEDSNK NIQQSNHLPK YERVKELCQQ 451 500 ENSBTAP00000037103/1-873 ARYQTACEQP GQKWQCVEDT SGKLRIHKCK GSGDLLAVRQ STRPLF-RGF ENSP00000260128/1-871 ARYQTACEQP GQKWQCIEDT SGKLRIHKCK GPSDLLTVRQ STRNLYARGF bmy_17012T0/1-623 ---------- --KWRCVEDA SGKLRIHKCK GSGDLLAVRH STRPLFSRSF BACU011129/1-1071 ARYQTACEQP GQKWRCVEDA SGKLRIHKCK GSGDLLAVQH STRPLFSRSF ENSTTRP00000010737/1-869 ARYQTACEQP GQKWRCVEDA SGKLRIHKCK GSGDLLAVRH STRPLFSRSF 501 550 ENSBTAP00000037103/1-873 HDKDKECTCG ESGYRASRSQ RKNQRQFLRN QGTPKYKPRF VHTRQTRSLS ENSP00000260128/1-871 HDKDKECSCR ESGYRASRSQ RKSQRQFLRN QGTPKYKPRF VHTRQTRSLS bmy_17012T0/1-623 HDKDKECNCG DAGYRASRSQ RKSQRQYLRN QGTPKYKPRF VHTRQTRSLS BACU011129/1-1071 HDKDKECNCG DAGYRASRSQ RKSQRQYLRN QGTPKYKPRF VHTRQTRSLS ENSTTRP00000010737/1-869 HDNDKECNCG DAGYRASRSQ RKSQRQYLRN QGTPKYKPRF VHTRQTRSLS 551 600 ENSBTAP00000037103/1-873 VEFEGEIYDI NL-EEEELQV LRPRNIAKRH DEGRQGPGGH QATGDGDGDT ENSP00000260128/1-871 VEFEGEIYDI NLEEEEELQV LQPRNIAKRH DEGHKGPRDL QASSGGNRGR bmy_17012T0/1-623 VEFEGEIYDI NL-EEEELQV LRPRNIAKRH DEGRQGPRGR QATSGGDGDT BACU011129/1-1071 VEFEGEIYDI NL-EEEELQV LRPRNIAKRH DEGRQGPRGR QASSGGDGDA ENSTTRP00000010737/1-869 VEFEGEIYDI NL-EEEELQV LRPRNIAKRH DEGRQGPRGR QATSGGDGDA 601 650 ENSBTAP00000037103/1-873 MLADSGNVVG LPTTVRVTHK CFILPNDTIH CERELYQSAR AWKDHKAFID ENSP00000260128/1-871 MLADSSNAVG PPTTVRVTHK CFILPNDSIH CERELYQSAR AWKDHKAYID bmy_17012T0/1-623 MLADSGNAVG LPATVRVTHK CFILPNDTIH CERELYQSTR AWKDHKAYID BACU011129/1-1071 MLADSGNAVG LPATVRVTHK CFILPNDTIH CERELYQSAR AWKDHKAYID ENSTTRP00000010737/1-869 MLADSGNAVG LPATVRVTHK CFILPNDTIH CERELYQSAR AWKDHKAYID 651 700 ENSBTAP00000037103/1-873 KEIEALQDKI KNLREVRGHL KRRKPEECGC SKQSYYNKEK GVKKQEKLKS ENSP00000260128/1-871 KEIEALQDKI KNLREVRGHL KRRKPEECSC SKQSYYNKEK GVKKQEKLKS bmy_17012T0/1-623 KEIEALQDKI KNLREVRGHL KRRKPEECGC NKQSYYNKEK GVKKQEKLKS BACU011129/1-1071 KEIEALQDKI KNLREVRGHL KRRKPEECGC NKQSYYNKEK GVKKQEKLKT ENSTTRP00000010737/1-869 KEIEVLQDKI KNLREVRGHL KRRKPEECGC NKQSYYNKEK GVKKQEKLKS 701 750 ENSBTAP00000037103/1-873 HLHPFKNREA AQEVDSKLQL YKE-NRRRKK ERKEKRRQRK GEECSLPGLT ENSP00000260128/1-871 HLHPFK--EA AQEVDSKLQL FKENNRRRKK ERKEKRRQRK GEECSLPGLT bmy_17012T0/1-623 HLHPFK--EA AQEVDSKLQL FKE-NRRRKK ERKEKKRQRK GEECSLPGLT BACU011129/1-1071 HLHPFK--EA AQEVDSKLQL FKE-NRRRKK ERKEKKRQRK GEECSLPGLT ENSTTRP00000010737/1-869 HLHPFK--EA AQEVDSKLQL FKE-NRRRKK ERKEKKRQRK GEECSLPGLT 751 800 ENSBTAP00000037103/1-873 CFTHDNSHWQ TAPFWNLGSF CACTSSNNNT YWCLRTVNET HNFLFCEFAT ENSP00000260128/1-871 CFTHDNNHWQ TAPFWNLGSF CACTSSNNNT YWCLRTVNET HNFLFCEFAT bmy_17012T0/1-623 CFTHDNNHWQ TAPFWNLGSF CACTSSNNNT YWCLRTVNET HNFLFCEFAT BACU011129/1-1071 CFTHDNNHWQ TAPFWNLGSF CACTSSNNNT YWCLRTVNET HNFLFCEFAT ENSTTRP00000010737/1-869 CFTHDNNHWQ TAPFWNLGSF CACTSSNNNT YWCLRTVNDT HNFLFCEFAT 801 850 ENSBTAP00000037103/1-873 GFLEYFDMNT DPYQLTNTVH TVERGVLNQL HLQLMELRSC QGYKQCNPRP ENSP00000260128/1-871 GFLEYFDMNT DPYQLTNTVH TVERGILNQL HVQLMELRSC QGYKQCNPRP bmy_17012T0/1-623 GFLEYFDMNT DPYQLTNTVH TIERGVLNQL HMQLMELRSC QGYKQCNPRP BACU011129/1-1071 GFLEFFDMNT DPYQLTNTVH TIERGVLNQL HMQLMELRSC QGYKQCNPRP ENSTTRP00000010737/1-869 GFLEYFDMNT DPYQLTNTVH TIERGVLNQL HMQLMELRSC QGYKQCNPRP 851 900 ENSBTAP00000037103/1-873 KGLEVGNKDG ---------- -------GSY DLHR-----Y SD-------- ENSP00000260128/1-871 KNLDVGNKDG ---------- -------GSY DLHR--GQLW DG-------- bmy_17012T0/1-623 KGLEVEDSYG TDGKVSQPSL TADVNWQGLE DLYRVNGSIY EDRPNYRLSL BACU011129/1-1071 KGLEVEDSYG TDGKVSQPSL TADVNWQGLE DLYRVNGSIY EDRPNYRLSL ENSTTRP00000010737/1-869 KGLEVGNKDG ---------- -------GSY DLHR--GQLW DG-------- 901 950 ENSBTAP00000037103/1-873 ---------- ---------- ---------- ---------- ---------- ENSP00000260128/1-871 ---------- ---------- ---------- ---------- ---------- bmy_17012T0/1-623 VDWTNYLKAA DRVFALLNSH HEQNKANKTK SAQSDGFLAM SAELSAPAES BACU011129/1-1071 VDWTNYLKAA DRVFALLNSH HEQNKANKTK SAQSDGFLAM SAELSAPAES ENSTTRP00000010737/1-869 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSBTAP00000037103/1-873 ---------- ---------- ---------- ----FFILPG ---------- ENSP00000260128/1-871 ---------- ---------- ---------- -------WEG ---------- bmy_17012T0/1-623 DEDPRRRVGE APPLTLPADL PTLRSDRPTF SPESKLEWNN DMPEVNRLNS BACU011129/1-1071 DEDPRRRVGE APPLTLPADL PTLHSNRPTF SPESKLEWNN DMPEVNRLNS ENSTTRP00000010737/1-869 ---------- ---------- ---------- -------WEG ---------- 1001 1050 ENSBTAP00000037103/1-873 ---------- ---------- ---------- ---------- ---------- ENSP00000260128/1-871 ---------- ---------- ---------- ---------- ---------- bmy_17012T0/1-623 EHWRNHKTEK WMEHEGINLL ETDFSGDGTT AELVQPGPRH RKGLPQDGPP BACU011129/1-1071 EHWRNHKTEK WMEHERINLL ETDVSGDGTT AELVQPGPRH QKGLPQDGPP ENSTTRP00000010737/1-869 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSBTAP00000037103/1-873 ---------- ---------- -------- ENSP00000260128/1-871 ---------- ---------- -------- bmy_17012T0/1-623 REDASEGRLH LTTHPDVDSV HRDQSVHQ BACU011129/1-1071 REDASEGRLR LTTHPDVDSV HRDRSVHP ENSTTRP00000010737/1-869 ---------- ---------- --------