KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:23 2014 Check: 00 .. Name: BACU011407/1-956 Len: 1266 Check: 2789 Weight: 1.00 Name: ENSP00000366522/1-1114 Len: 1266 Check: 9111 Weight: 1.00 Name: ENSBTAP00000037196/1-1113 Len: 1266 Check: 283 Weight: 1.00 Name: bmy_07546T0/1-690 Len: 1266 Check: 2850 Weight: 1.00 Name: ENSTTRP00000009407/1-1109 Len: 1266 Check: 1994 Weight: 1.00 // 1 50 BACU011407/1-956 ---------- ---------M GPGGLARAPL C----PPPHH PLRLSTVASS ENSP00000366522/1-1114 MSQTQDYECR SHNVDLPESR IPGSNTRLEW VEIIEPRTRE RMYANLVTGE ENSBTAP00000037196/1-1113 MSQAQDYECE SQHAGLLESR VSGSSTRLEW VEIIEPRTRE RMYANLVTGE bmy_07546T0/1-690 MSQTQDYECE SHHAGLQESR ISGSSTRLEW VEIIEPRTRE RMYANLVTGE ENSTTRP00000009407/1-1109 MSQTQDYECE SHHAGLQEPR LSGSSTRLEW VEIIEPRTRE RMYANLVTGE 51 100 BACU011407/1-956 CSRAMPSSVP LRAR-----F PVHSSDAPRQ RAIPGAVSGL VLQRPE---- ENSP00000366522/1-1114 CVWDPPAGVR IKRTSENQWW ELFDPNTSRF YYYNASTQRT VWHRPQGCDI ENSBTAP00000037196/1-1113 CVWDPPAGVR IKRTSENQWW ELFDPNTSRF YYYNASTQRT VWHRPQDCDI bmy_07546T0/1-690 CVWDPPAGVR IKRTSENQWW ELFDPNTSRF YYYNATTQRT VWHRPQDCDI ENSTTRP00000009407/1-1109 CVWDPPAGVR IKRTSENQWW ELFDPNTSRF YYYNATTQRT VWHRPQDCDI 101 150 BACU011407/1-956 ------VLVR SAVDCTRSVS PV--GAEVCL PHLPRVPAPA QAQLELIGRS ENSP00000366522/1-1114 IPLAKLQTLK QNTESPRASA ESSPGRGSSV SREGSTSSSL EPEPDT-EKA ENSBTAP00000037196/1-1113 IPLAKLQTLK QNTESPRASA ENSPGRGSSV SRDGSTSSSL EPELDSGDRA bmy_07546T0/1-690 IPLAKLQTLK QNTESPRASA ENSPGRGSSV SRDGSTSSSL EPELDAGDKV ENSTTRP00000009407/1-1109 IPLAKLQTLK QNTDSPRASA ENSPGRGSSV SHDGSTSSSL EPELDAGDKV 151 200 BACU011407/1-956 PSSEVDLGRS GL-------- SLSSPSGGLL GNDYEIYRDY SADGRLLHC- ENSP00000366522/1-1114 QELPARAGRP AAFGTVKEDS GSSSPPGVFL EKDYEIYRDY SADGQLLHYR ENSBTAP00000037196/1-1113 PEPVGRASRQ ATPGMVKDES SSSSPSGVLL EKDYEVYRDY SVDGHLLHCR bmy_07546T0/1-690 QETLGRASRQ AVLGAVKEES GSS------- ---------- ---------- ENSTTRP00000009407/1-1109 QESLGRASRQ AVLGAVKEES GSSSPSGGLL EKDYEIYQDY SADGHLLHCR 201 250 BACU011407/1-956 -SSLSRQSG- KDRETVEEGG RVPAAVQP-- ---------- ---------- ENSP00000366522/1-1114 TSSLRWNSGA KERMLIKVAD REPSFLAAQG NGYAPDGPPG VRSRRPSGSQ ENSBTAP00000037196/1-1113 TSSLRWNSGT KERMLIKVAD REPSFLSPQG NGYALDSQPG GRSRRPSGGQ bmy_07546T0/1-690 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009407/1-1109 TSSLRWNSGT KERMLIKVA- REPSFLFPQG NGY-PWPVST CRSRTPSGGQ 251 300 BACU011407/1-956 ---------- ---------- ---------- ---------- ---------- ENSP00000366522/1-1114 HSPSLQTFAP EADGTIFFPE RRPSPFLKRA ELPGSSSPLL AQPRKPSGDS ENSBTAP00000037196/1-1113 HSPSLQTFTP DADSPVFFPE RRPSPFPKRA EL-GSCSPLL AQPRRPAGDS bmy_07546T0/1-690 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009407/1-1109 XXXXXXXXXX XXXXXXXXXX XXXXXXXKRA EL-GSCSPLL AQPRKPAADS 301 350 BACU011407/1-956 ---------- ---------- ---------- ---------- ---------- ENSP00000366522/1-1114 QPSSPRYGYE PPLYEEPPVE YQAPIYDEPP MDVQFEAGGG YQAGSPQRSP ENSBTAP00000037196/1-1113 QPSSPRYAYE PPLYEEPPVE YQAPLYDEPP MDVQFEAG-- ----SPRRSP bmy_07546T0/1-690 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009407/1-1109 QPSSPRYAYE PPLYEEPPVE YQAPIYDEPP MDVQFEAGGG YQASSPRRSP 351 400 BACU011407/1-956 ---------- ---------- ---------- ---------- -GAGHVRGLR ENSP00000366522/1-1114 GRKPRPFLQP NKQGPPSPCQ QLVLTKQKCP ERFLSLEYSP AGKEYVRQLV ENSBTAP00000037196/1-1113 GRKPP----- -KAASASPYQ QLVLTRQKCP ERYLSLEYSP AGKEYVRQLV bmy_07546T0/1-690 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009407/1-1109 SRKPP----- -KQASASPYQ QLVLTRQKCP ERYLSLEYSP AGKEYVRQLV 401 450 BACU011407/1-956 F----AGCPK LRAGPRHKYT PHPGGGSLSL QPSPCLLRDQ R------LGV ENSP00000366522/1-1114 YVEQAGSSPK LRAGPRHKYA PNPGGGSYSL QPSPCLLRDQ R------LGV ENSBTAP00000037196/1-1113 YVEQASSSPK LRAGPRHKYT PHPGGGSLSL QPSPCLLRDQ RLGATSSLGV bmy_07546T0/1-690 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009407/1-1109 YVEQAGSSPK LRAGPRHKYS PHPGGGSLSL QPSPCLLRDQ R------LGV 451 500 BACU011407/1-956 TSGDYSSMEG PERRSAQPPV PLAQAQDDAM SWSSQQDTMS STGCSPGTRK ENSP00000366522/1-1114 KSGDYSTMEG PELRHSQPPT PLPQAQEDAM SWSSQQDTLS STGYSPGTRK ENSBTAP00000037196/1-1113 VSGDYSSMEG PELRPAPPPT PLPQAQDDAM SWSSQQDTMS STGYSPSTRK bmy_07546T0/1-690 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009407/1-1109 TSGDYSSMEG PELRSAQPPM PLPQAQDDAM SWSSQQDTMS STGCSPSTRK 501 550 BACU011407/1-956 RKSRNPSACH APSALPTDGP GEGPGDRDPL GQQPLSEERP LCSPSLAPTQ ENSP00000366522/1-1114 RKSRKPSLCQ ATSATPT--- -EGPGDL--L VEQPLAEEQP PCGTSLAPVK ENSBTAP00000037196/1-1113 RKSRNPSVCH APSAPPA--- -EGPGDCDPL SQQPLTDERP LCGPGLTPIK bmy_07546T0/1-690 ---------- ---------- -DAPPQR--- ---------- ---------- ENSTTRP00000009407/1-1109 RKSRNPSACH TPSALPT--- -EGPGDRDPL GQQPLTEERP LCSPSLAPTR 551 600 BACU011407/1-956 RAEGEAGEGD GTRGEAEPFL AQALLAWEAQ QAHLHMKQRG SWDSQQDGSG ENSP00000366522/1-1114 RAEGEA---E GARGAAEPFL AQARLAWEAQ QAHFHMKQRS SWDSQQDGSG ENSBTAP00000037196/1-1113 RTEGEAGDGE GHRGPAEPFL AQARLAWEAQ QAHLHMKQRG SWDSQQDGSG bmy_07546T0/1-690 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009407/1-1109 RAEGEAHEGD GTRGEAEPFL AQARLAWEAQ QARLHMKQRG SWDSQQDGSG 601 650 BACU011407/1-956 YESDGAVPPP MPGPVVRAFS EDEALAQQES -KRWQRGALD RLGFPQVLLA ENSP00000366522/1-1114 YESDGALPLP MPGPVVRAFS EDEALAQQEN -RHWRRGTFE KLGFPQILLE ENSBTAP00000037196/1-1113 YESDGAVPLP MPGPVVRAFS EDEALAQQES -KHWQRGALD RLAFPQVLLE bmy_07546T0/1-690 -----AIPGA VSGLVLQR-- ---------- ---------- ----PEVLVR ENSTTRP00000009407/1-1109 YESDGAVPLP MPGPVVRAFS EDEALAQQES KKHWQRAASD RLAFPQALLE 651 700 BACU011407/1-956 KSVSVQTSLA SPEPYLHPSQ SEDLGTCAPF ESSRQSRSVM PGARCVFPTF ENSP00000366522/1-1114 KSVSVQTNLA SPEPYLHPSQ SEDLAACAQF ESSRQSRSGV PSSSCVFPTF ENSBTAP00000037196/1-1113 KSVSVQTSLA SPEPYLHPSQ SEDLGTCAQF ESSRQARSVM PSASCVFPTF bmy_07546T0/1-690 SAVDCTRS-- ---------- SEDLGTCAQF ESSRQTRSVM PSASCVFPTF ENSTTRP00000009407/1-1109 KSVSVQTSLA SPEPYLHPSQ SEDLGTCAQF ESSRQTRSVM PSASCVFPTF 701 750 BACU011407/1-956 TLRKPSSETD IENWASKHFN KHTQGLFRRR VSIANMLAWS SESIKKPMIV ENSP00000366522/1-1114 TLRKPSSETD IENWASKHFN KHTQGLFRRK VSIANMLAWS SESIKKPMIV ENSBTAP00000037196/1-1113 TLRKPSSETD IENWASKHFN THTQGLFRRK VSIANMLAWS SESIKKPMIV bmy_07546T0/1-690 TLRKPSSETD IENWASKHFN KHTQGLFRRK VSIANMLAWS SESIKKPMIV ENSTTRP00000009407/1-1109 TLRKPSSETD IENWASKHFN KHTQGLFRRK VSIANMLAWS SESIKKPMIV 751 800 BACU011407/1-956 TSDRHVKKEA CEVFKLIQMY MGDRRAKADP LHVALEIATK GWSVQGLRDE ENSP00000366522/1-1114 TSDRHVKKEA CELFKLIQMY MGDRRAKADP LHVALEVATK GWSVQGLRDE ENSBTAP00000037196/1-1113 TSDRHVKKEA CEVFKLIQMY MGDRRAKADP LHVALEIATK GWSVQGLRDE bmy_07546T0/1-690 TSDRHVKKEA CEVFKLIQMY MGDRRAKADP LHVALEIATK GWSVQGLRDE ENSTTRP00000009407/1-1109 TSDRHVKKEA CEVFKLIQMY MGDRRAKADP LHVALEIATK GWSVQGLRDE 801 850 BACU011407/1-956 LYIQLCRQTT ENFRLESLAR GWELMAICLA FFPPTPKFHS YLEGYIYRHM ENSP00000366522/1-1114 LYIQLCRQTT ENFRLESLAR GWELMAICLA FFPPTPKFHS YLEGYIYRHM ENSBTAP00000037196/1-1113 LYIQLCRQTT ENFRLESLAR GWELMAICLA FFPPTPKFHS YLEGYIYRHM bmy_07546T0/1-690 LYIQLCRQTT ENFRLESLAR GWELMAICLA FFPPTPKFHS YLEGYIYRHM ENSTTRP00000009407/1-1109 LYIQLCRQTT ENFRLESLAR GWELMAICLA -FPPTPKFHS YLEGYIYRHM 851 900 BACU011407/1-956 DPVNDTKVTQ HMKALLERNT KKKSKLRKKP KPYVEEPD-- ---------- ENSP00000366522/1-1114 DPVNDTKVTQ HIKELLERNT KKKSKLRKKP KPYVEEPD-- ---------- ENSBTAP00000037196/1-1113 DPVNDTKVTQ HMKALLERNT KKKSKLRKKP KPYVEEPD-- ---------- bmy_07546T0/1-690 DPVNDTKVTQ HMKALLERNS KKKSKLRKKP KPYVEEPDVT GWPAAPAPTH ENSTTRP00000009407/1-1109 DPVNDTKVTQ HMKALLERNS KKKSKLRKKP KPYVEEPD-- ---------- 901 950 BACU011407/1-956 ---------- -GVAISTYAK YCYHKLQKAA LTGAKKVFVQ PANVAITKMD ENSP00000366522/1-1114 ---------- -GVAISTYAK YCYHKLQKAA LTGAKK---- ---------- ENSBTAP00000037196/1-1113 ---------- -GVAISTYAK YCYHKLQKAA LTGAKK---- ---------- bmy_07546T0/1-690 PCQANWHHSF PGVAISTYAK YCYHKLQKAA LTGAKK---- ---------- ENSTTRP00000009407/1-1109 ---------- -GVAISTYAK YCYHKLQKAA LTGAKK---- ---------- 951 1000 BACU011407/1-956 VSNLAMVMAP NCLRCRSDDP RIIFENTRKE MSFLRVLIQH LDTTFMAPRP ENSP00000366522/1-1114 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037196/1-1113 ---------- ---------- ---------- ---------- ---------- bmy_07546T0/1-690 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009407/1-1109 ---------- ---------- ---------- ---------- ---------- 1001 1050 BACU011407/1-956 RPGVHRDERT GGKRAGEPGA ALAEVQGEGG LGAGRQATLG QRAGPPLQGL ENSP00000366522/1-1114 ---------- ---------- ---------- ---------- --------GL ENSBTAP00000037196/1-1113 ---------- ---------- ---------- ---------- --------GL bmy_07546T0/1-690 ---------- ---------- ---------- ---------- --------GL ENSTTRP00000009407/1-1109 ---------- ---------- ---------- ---------- --------GL 1051 1100 BACU011407/1-956 KKPNVEEIRH AKNAVFSPSM FGSALQEVMS MQKERYPDRQ LPWVQTRLSE ENSP00000366522/1-1114 KKPNVEEIRH AKNAVFSPSM FGSALQEVMG MQRERYPERQ LPWVQTRLSE ENSBTAP00000037196/1-1113 KKPNVEEIRH AKNAVFSPSM FGSALQEVMS MQKERYPDRQ LPWVQTRLSE bmy_07546T0/1-690 KKPNVEEIRH AKNAVFSPSM FGSALQEVMS MQKERYPARQ LPWVQTRLSE ENSTTRP00000009407/1-1109 KKPNVEEIRH AKNAV-SPSM -GSALQEVMS MQRERFPDRQ LPWVQTRLSE 1101 1150 BACU011407/1-956 EVLALNGDQT EGIFRVPGDI DEVNALKLQV DQWKVPTGLE DPHVPASLLK ENSP00000366522/1-1114 EVLALNGDQT EGIFRVPGDI DEVNALKLQV DQWKVPTGLE DPHVPASLLK ENSBTAP00000037196/1-1113 EVLALNGDQT EGIFRVPGDI DEVNALKLQV DQWKVPTGLE DPHVPASLLK bmy_07546T0/1-690 EVLALNGDQT EGIFRVPGDI DEVNALKLQV DQWKVPTGLE DPHVPASLLK ENSTTRP00000009407/1-1109 EVLALNGDQT EGIFRVPGDI DEVNALKLQV DQWKVPTGLE DPHVPASLLK 1151 1200 BACU011407/1-956 LWYRELEEPL IPHEFYEQCI AHYESPEAAV AVVHALPRIN RLVLCYLIRF ENSP00000366522/1-1114 LWYRELEEPL IPHEFYEQCI AHYDSPEAAV AVVHALPRIN RMVLCYLIRF ENSBTAP00000037196/1-1113 LWYRELEEPL IPHEFYEQCI AHYESPEAAV AVVHALPRIN RLVLCYLIRF bmy_07546T0/1-690 LWYRELEEPL IPHEFYEQCI AHYESPEAAV AVVHALPRIN RLVLCYLIRF ENSTTRP00000009407/1-1109 LWYRELEEPL IPHEFYEQCI AHYESPEAAV AVVHALPRIN RLVLCYLIRF 1201 1250 BACU011407/1-956 LQTS------ ---------- ---------- ---------- ---------- ENSP00000366522/1-1114 LQVFVQPANV AVTKMDVSNL AMVMAPNCLR CQSDDPRVIF ENTRKEMSFL ENSBTAP00000037196/1-1113 LQVFVQPANV AITKMDVSNL AMVMAPNCLR CRSDDPRVIF ENTRKEMSFL bmy_07546T0/1-690 LQVFVQPANV AITKMDVSNL AMVMAPNCLR CRSDDPRIIF ENTRKEMSFL ENSTTRP00000009407/1-1109 LQVFVQPANV AITKMDVSNL AMVMAPNCLR CRSDDPRIIF ENTRKEMSFL 1251 1300 BACU011407/1-956 ---------- ------ ENSP00000366522/1-1114 RVLIQHLDTS FMEGVL ENSBTAP00000037196/1-1113 RVLIQHLDTS FMEGVL bmy_07546T0/1-690 RVLIQHLDTT FMEGVL ENSTTRP00000009407/1-1109 RVLIQHLDTT FMEGVL