KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:24 2014 Check: 00 .. Name: bmy_07541T0/1-643 Len: 766 Check: 2115 Weight: 1.00 Name: ENSTTRP00000013140/1-676 Len: 766 Check: 8035 Weight: 1.00 Name: ENSP00000432724/1-686 Len: 766 Check: 6278 Weight: 1.00 Name: ENSBTAP00000037199/1-702 Len: 766 Check: 6060 Weight: 1.00 Name: BACU011410/1-676 Len: 766 Check: 8078 Weight: 1.00 // 1 50 bmy_07541T0/1-643 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013140/1-676 ---------- ---------- ---------M EAVTFGDVAV HFSREEWQCL ENSP00000432724/1-686 ---------- ---------- ---------M EVVTFGDVAV HFSREEWQCL ENSBTAP00000037199/1-702 MGLDLDPRPL ADPLPVSGVS KPGDWCVSFQ EAVTFGDVAV HFSREEWQCL BACU011410/1-676 ---------- ---------- ---------M EAVTFGDVAV HFSREEWQCL 51 100 bmy_07541T0/1-643 ---------- ---------- ---GFLVFKP ELISRLEQGQ EPWVLDLQGA ENSTTRP00000013140/1-676 DPGQRALYKE VMLENHSSVA GLAGFLVFKP ELISRLEQGQ EPWVLDLQGA ENSP00000432724/1-686 DPGQRALYRE VMLENHSSVA GLAGFLVFKP ELISRLEQGE EPWVLDLQGA ENSBTAP00000037199/1-702 DPGQRALYKE VMLENHSSVA GLAGFLVFKP ELISRLEQGQ DPWVLDLQGA BACU011410/1-676 DPGQRALYKE VMLENHSSVA GLAGFLVFKP ELISRLEQGQ EPWVLDLQGA 101 150 bmy_07541T0/1-643 EGREAARTSE ADSTIGTESE QACENIDRLK SESRVVMVKT PSQDFPQSPG ENSTTRP00000013140/1-676 EGREAARTSQ ADSTIGTESE QACEDIDRLK SESHVVMVKT PSQDFPQSPG ENSP00000432724/1-686 EGTEAPRTSK TDSTIRTENE QACEDMDILK SESYGTVVRI SPQDFPQNPG ENSBTAP00000037199/1-702 EGREEARTTR TDSTVGTDGE Q---DMDSFK SESGGVMVKT LPQNFPQSPG BACU011410/1-676 EGREAARTSK ADSTIGTESE QACEDIDRLK SESHVVMVKT PSQDFPQSPG 151 200 bmy_07541T0/1-643 FGDASDPEVC SESQPTS--- -----LFQKN CLNTGTAAPR ETFAEDEAQG ENSTTRP00000013140/1-676 FGDASDPEVC SESQPTS--- -----LFQKN CLNIGTVAPR ETFAE-EAQG ENSP00000432724/1-686 FGDVSDSEVW LDSHLGSPGL KVTGFTFQNN CLNEETVVPK -TFTKDAPQG ENSBTAP00000037199/1-702 FGNTSDPEVC SQRQPTS--- -----LFHKN FLNMGTMGPR KAFTEDEFQG BACU011410/1-676 FGDASDPEVC SESQPTS--- -----LFQKN CLNTGTAAPR ETFAEDEAQG 201 250 bmy_07541T0/1-643 CGERGSGGRL GCRRDQSQGS -----LRRCD ICGWRWK--- QIALVDTVTS ENSTTRP00000013140/1-676 CGERGS-GRL -CRXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000432724/1-686 CKELGSSG-L DCQPLESQGE SAEGMSQRCE ECGKGIRATS DIALHWEINT ENSBTAP00000037199/1-702 HGEWGSSGRL GCQPDQSQWS -----FGRCD VCGRSLRSPS DAALHQEVNT BACU011410/1-676 CGERGSGGRL GCRHDQSQGS -----LRRCD ICGRSFRSTS DVALHQEINT 251 300 bmy_07541T0/1-643 -RGPGPSQSL PTLRGVDQQG GHTHRAGETE PDSPRQEHKD KGVSAAWWAK ENSTTRP00000013140/1-676 -XXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000432724/1-686 -QKISRCQEC QKKLSDCLQG KHTNNCHGEK PYECAECGKV FRLCSQLNQH ENSBTAP00000037199/1-702 QQKPNRCQEC QKQLSDCFQG RPLSTFPGEK PYECRECGKV FRLCSQLTQH BACU011410/1-676 QKRPNSCQEC QKKLSDCLQG RHLSTLHGEK PYECEECGKV FRLCSQLTQH 301 350 bmy_07541T0/1-643 GCANPGADPR DSQPQVGKAP LPARKTEDDG RVP------R EGGCVRS-CQ ENSTTRP00000013140/1-676 XXXXXXXKPF KCT-ECGKAF RLSSKLIQHQ RIHTGEKPYR CEECGKAFGQ ENSP00000432724/1-686 QRIHTGEKPF KCT-ECGKAF RLSSKLIQHQ RIHTGEKPYR CEECGKAFGQ ENSBTAP00000037199/1-702 QRIHTGEKPF KCT-DCGKAF RLSSKLIQHQ RIHTGEKPYR CEECGKAFGQ BACU011410/1-676 QRIHTGEKPF KCT-ECGKAF RLSSKLIQHQ RIHTGEKPYR CEECGKAFGQ 351 400 bmy_07541T0/1-643 ARDLEPRRRG H-GATPW--- ----QQSSEH LLGHVGRART PGLRSWLHWP ENSTTRP00000013140/1-676 SSSLIHHQRV HTGERPYGCR ECGKAFSQQS QLARHQRTHT -GERPYPCQE ENSP00000432724/1-686 SSSLIHHQRI HTGERPYGCR ECGKAFSQQS QLVRHQRTHT -GERPYPCKE ENSBTAP00000037199/1-702 SSSLIHHQRV HTGERPYGCR ECGKAFSQQS QLARHQRTHT -GERPYPCRE BACU011410/1-676 SSSLIHHQRV HTGERPYGCR ECGKAFSQQS QLARHQRTHT -GERPYPCQE 401 450 bmy_07541T0/1-643 NFAAVTGKTD APEPVALDPK QKYTIILKRE GRPLLWR--- HLSEPAIPGD ENSTTRP00000013140/1-676 CGKAFSQSST LAQHQRMHAG EKLQLPRAPD SPSLVAHQRL HATEKPFKCD ENSP00000432724/1-686 CGKAFSQSST LAQHQRMHTG EKAQILKASD SPSLVAHQRI HAVEKPFKCD ENSBTAP00000037199/1-702 CGKAFSQSST LAQHQRMHAA EKLELPRTPE SPSLGARQRM HVPEKPFKCD BACU011410/1-676 CGKAFSQSST LAQHQRMHAG EKLQLPRTPD SPSLVAHQRL HATEKPFKCD 451 500 bmy_07541T0/1-643 QKGTGEQGSA LQFALAPLLQ VGHLLQDHGH TEPQLLELGR GDLEAEGRPI ENSTTRP00000013140/1-676 ECGKA----- --FRWVSRLS QHQLT--HTG EKPYKCNKCS KAFGCSSRLI ENSP00000432724/1-686 ECGKA----- --FRWISRLS QHQLI--HTG EKPYKCNKCT KAFGCSSRLI ENSBTAP00000037199/1-702 ECGKA----- --FRWVSRLS QHQLT--HTG EKPYKCNKCS KAFGCSSRLI BACU011410/1-676 ECGKA----- --FRWVSRLS QHQLT--HTG EKPYKCNKCS KAFGCSSRLI 501 550 bmy_07541T0/1-643 RELQLHQDTW LQGA---GQG AGGDGHVHPP PKVGNMGQPG PLLPGRRVKE ENSTTRP00000013140/1-676 RHQRTHTGEK PFKCEECGKG FVQGSHLIQH QRIHTGEKP- -----YECSD ENSP00000432724/1-686 RHQRTHTGEK PFKCDECGKG FVQGSHLIQH QRIHTGEKP- -----YVCND ENSBTAP00000037199/1-702 RHQRTHTGEK PFKCDECGKG FVQGSHLIQH QRIHTGEKP- -----YECSD BACU011410/1-676 RHQRTHTGEK PFKCDECGKG FVQGSHLIQH QRIHTGEKP- -----YECSD 551 600 bmy_07541T0/1-643 RPLAPKHHTS QVHDQVLGDA ELLELVLEGI GLQAGRGQPE GLLEQGVCAS ENSTTRP00000013140/1-676 CGKAFSQSSS LIYHQRIHKG E--------- -------KPY ECLECGKAFS ENSP00000432724/1-686 CGKAFSQSSS LIYHQRIHKG E--------- -------KPY ECLQCGKAFS ENSBTAP00000037199/1-702 CGKAFSQSSS LIYHQRIHKG E--------- -------KPY ECLECGKAFS BACU011410/1-676 CGKAFSQSSS LIYHQRIHKG E--------- -------KPY ECLECGKAFS 601 650 bmy_07541T0/1-643 DQGTQLLLRQ VCASPEAPHS LTAVFSLQAA DHQLQQLSER APVQVPQELG ENSTTRP00000013140/1-676 -MSTQLTIHQ RVHTGERPYK CSECGKAFSQ NSTLFQHQII HAGVKPYGCS ENSP00000432724/1-686 -MSTQLTIHQ RVHTGERPYK CNECGKAFSQ NSTLFQHQII HAGVKPYECS ENSBTAP00000037199/1-702 -MSTQLTIHQ RVHTGERPYK CSECGKAFSQ NSTLFQHQII HAGVKPYGCS BACU011410/1-676 -MSTQLTIHQ RVHTGERPYK CSECGKAFSQ NSTLFQHQII HAGVKPYGCS 651 700 bmy_07541T0/1-643 HCCHLWRQLG TQETHAATVT VTRAMQVWS- ---CRTHGRH RCFLLFDRQP ENSTTRP00000013140/1-676 ECGKAFSRSS YLIEHQRIHT RAQCYHEYG- TLEASTHVSR KKVNTVKKLH ENSP00000432724/1-686 ECGKAFSRSS YLIEHQRIHT RAQWFYEYGN ALEGSTFVSR KKVNTIKKLH ENSBTAP00000037199/1-702 ECGKAFSRSS YLIEHQRIHT RAQWYREYGS TLEASTHTSR RRVNTVKKLH BACU011410/1-676 ECGKAFSRSS YLIEHQRIHT RAQWYHEYGN TLEASTHVSR KKVNTVKKLH 701 750 bmy_07541T0/1-643 RCRRCETLM- --TASVTEGA LEAGGGGAPL QSLEEGRQEP AEKGDEVGR- ENSTTRP00000013140/1-676 KCNECEKIFR WRSHLIIHQR IHTG------ --------EK PYKCNECGKA ENSP00000432724/1-686 QCEDCEKIFR WRSHLIIHQR IHTG------ --------EK PYKCNDCGKA ENSBTAP00000037199/1-702 KCNECEKIFR WRSHLIIHQR IHTG------ --------EK PYKCNECDKA BACU011410/1-676 KCNECEKIFR WRSHLIIHQR IHTG------ --------EK PYKCNECGKA 751 800 bmy_07541T0/1-643 --REGRESGN RRAT-- ENSTTRP00000013140/1-676 FNRSSRLTQH QKIHMG ENSP00000432724/1-686 FNRSSRLTQH QKIHMG ENSBTAP00000037199/1-702 FNRSSRLTQH QKIHMG BACU011410/1-676 FNRSSRLTQH QKIHMG