KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:24 2014 Check: 00 .. Name: ENSP00000353238/1-400 Len: 553 Check: 6472 Weight: 1.00 Name: ENSBTAP00000037201/1-482 Len: 553 Check: 9055 Weight: 1.00 Name: ENSTTRP00000005027/1-398 Len: 553 Check: 7745 Weight: 1.00 Name: bmy_00762T0/1-459 Len: 553 Check: 4150 Weight: 1.00 Name: BACU011924/1-431 Len: 553 Check: 5450 Weight: 1.00 // 1 50 ENSP00000353238/1-400 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037201/1-482 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005027/1-398 ---------- ---------- ---------- ---------- ---------- bmy_00762T0/1-459 MLGWVEPGPL PFPLGPLHQS CPSFRSWSSL VPALCPYPLS WSQLLLMPVA BACU011924/1-431 ---------- ---------- ---------- ---------- ------MPVA 51 100 ENSP00000353238/1-400 --MATLLLLL G---VLVVSP DALGSTTAVQ TPTSGEPLVS TSEPLSSKMY ENSBTAP00000037201/1-482 ---------M G---AENVTE VSSRSS---- PLWTSKTTIA SLSSVSETLT ENSTTRP00000005027/1-398 --MILLLLLF G---ASGTSS ESPDGTSTLQ XXXXXXXXXX XXXXXXXXXX bmy_00762T0/1-459 LEMILLLLLF GSVWAQNTTS ESLDGPVTLQ RLEPTASSVS LVSNIYETTK BACU011924/1-431 LEMILLLLLF GSVWAQNVSS ESLDGPVTLQ RLEPTASSVS LVSNIYETTK 101 150 ENSP00000353238/1-400 TTSITSDPKA DSTGDQTSA- ----LPPST- --SINEGSPL WTSIGASTGS ENSBTAP00000037201/1-482 FNSVTTSLTT NEVSKMSDNP EHQTLPPSSI PYIADVVSSP ETSPTASRGS ENSTTRP00000005027/1-398 XXXXXXXXXX XXXXXXXXS- -----PPSST PYTANEVSSH WTSIAASRGP bmy_00762T0/1-459 FNSMTSNFAT TEVPKTDDSI EHEIFPPSST PYTANEVSSP GTSIAASRGP BACU011924/1-431 FNSMTSNFAT TEVPKTDDSI ERKIFPPSST PYTANEASSP GTSIAASRGP 151 200 ENSP00000353238/1-400 PLPEPTTYQE VSIKMSSVPQ ETPHATSHPA VPITANSLGS HTVTGGTITT ENSBTAP00000037201/1-482 PVSESTISKE DSSKKSIKLM KTPDATSTPG VSVMKPT-GF PTMTSKTMAT ENSTTRP00000005027/1-398 PVNESIISQK DSAQTLSMPL EISNATSIPA VPVVKSA-GF HTTTGETMAT bmy_00762T0/1-459 PVNESIISQK DSAKKLSMPL EISNATSIPA VPVMKST-GF HTTTGETMAT BACU011924/1-431 PVNESIISQK DSAKKLSMPL EISNATSIPA VPVMKST-GF HTTTGETMAT 201 250 ENSP00000353238/1-400 NSPETSS--- ---------- ---------- ---------- ---------- ENSBTAP00000037201/1-482 SPLETSSATS KVLLTMATSS LEISGGTSRP PVSMAMSSLD TSSGTSEVLL ENSTTRP00000005027/1-398 SPLETSS--- ---------- ---------- ---------- ---------- bmy_00762T0/1-459 SPLETSS--- ---------- ---------- ---------- ---------- BACU011924/1-431 SPLETSS--- ---------- ---------- ---------- ---------- 251 300 ENSP00000353238/1-400 ---------- -RTSGAPVTT AASSLETSRG TSG------- ---------- ENSBTAP00000037201/1-482 TMATSSLDIS GGTSRPPVSM ATSSLDTSSG TSEVLLTMAT SSLDISGGTS ENSTTRP00000005027/1-398 ---------- -GTSGPPVTT ATSSLETSDG TSG------- ---------- bmy_00762T0/1-459 ---------- -GTSGPPVTT ATSSLETSDG TSG------- ---------- BACU011924/1-431 ---------- -GTSGPPVTT ATSSLETSDG TSG------- ---------- 301 350 ENSP00000353238/1-400 -PPLTMAT-- ---------- ------VSLE TSKGTSGPPV TMATDSLETS ENSBTAP00000037201/1-482 RPPVTMATSS LETSSGTREP LVTTATSSVK TISMTSGSPV IMKTSSPKTS ENSTTRP00000005027/1-398 -PPITTAI-- ---------- ------SSLK ASNVTSGPPV IMETSSLKTS bmy_00762T0/1-459 -PPVTIAI-- ---------- ------SSLK TSNVTSGPPV IMETSSLKTS BACU011924/1-431 -PPVTIAISS LKTSNVTSGP PVIMETSSLK TSNVTSGPPV IMETSSLKTS 351 400 ENSP00000353238/1-400 TGTTGPPVTM TTGSLEPSSG ASGPQVSSVK LSTMMSPTTS TNASTVPFRN ENSBTAP00000037201/1-482 KG-SGLLVTT PATSLKTPMA TTGSTGHEVT TF---SPNTS TNVSRRDKLI ENSTTRP00000005027/1-398 KETSGLPVTM ATTSLKTPLG TSGSPTFGVK IS---SPTSS TNISSRSSPN bmy_00762T0/1-459 KETSGLPVTM ATTSLKTPRG TSGSPIFGVK IS---SPTSS TNISSRSSPN BACU011924/1-431 KETSGLPVTM ATTSLKTPRG TSGSPIFGVK IS---SPTSS TNISSRSSPN 401 450 ENSP00000353238/1-400 PDENSRGMLP VAVLVALLAV IVLVALLLLW RRRQKRRTGA LVLSRGGKRN ENSBTAP00000037201/1-482 PPQGTKGTLL VAVLVALLVV VVLVALILLW LRRQKRKTGV LTLGGGGKRN ENSTTRP00000005027/1-398 SGWETNGTLL VAVLVALLVV IFLMALLLLW HQRQKRKTGV LTLSRSGKHN bmy_00762T0/1-459 SGRGTNGTLL VAVLVALLVV TALVALLLLW RQRQKRKTGV LTLSRSGKHN BACU011924/1-431 SGWGTNGTLL VAVLVALLVV TALVALLLLW RQRQKRKTGV LTLSRSGKHN 451 500 ENSP00000353238/1-400 GVVDAWAGPA QVPEEGAVTV TVGGSGGDKG SGFPDGEGSS RRPTLTTFFG ENSBTAP00000037201/1-482 GVVDAWAGVA RVPDEEAMTA TEGASRGNND SDGPHREGSG QRPTLTTFFG ENSTTRP00000005027/1-398 GVANAWAGVA QVSHEEAATI TEGASGGNND SGVPQGEGSG QRPTLTTSFG bmy_00762T0/1-459 GVANAWAGVA QVSHEEAATI TEGASGGNND SGVPQGEGSG QRPTLTTFFG BACU011924/1-431 GVANAWAGVA QVSHEEAATI TEGASGGNND SGVPQGEGSG QRPTLTTFFG 501 550 ENSP00000353238/1-400 RRKSRQGSLA MEELKSGSGP SLKGEEEPLV ASEDGAVDAP APDEPEGGDG ENSBTAP00000037201/1-482 RRKSRQGSMA LEELKAGPAS SLTGEEEPLV CNEDEGAEAP TSNGPEAREV ENSTTRP00000005027/1-398 RRKSRQGSVA LEELKPGPAP SLKGEEEPLV GSKDEAAETS TSDGPEERDV bmy_00762T0/1-459 RRKSRQGSVA LEELKPGPAP SLNGEEEPLV GSKDEAAETS ASDGPEERDV BACU011924/1-431 RRKSRQGSVA LEELKPGPAP SLNGEEEPLV GSKDEAAETS ASDGPEERDV 551 600 ENSP00000353238/1-400 AAP ENSBTAP00000037201/1-482 KTP ENSTTRP00000005027/1-398 EAP bmy_00762T0/1-459 EAP BACU011924/1-431 EAP