KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:47:24 2014 Check: 00 .. Name: ENSBTAP00000037239/1-493 Len: 498 Check: 3415 Weight: 1.00 Name: ENSP00000312675/1-477 Len: 498 Check: 7128 Weight: 1.00 Name: bmy_00720T0/1-478 Len: 498 Check: 127 Weight: 1.00 Name: BACU011959/1-430 Len: 498 Check: 3037 Weight: 1.00 // 1 50 ENSBTAP00000037239/1-493 PAMSAAPGLL HQELSCPLCL QLFDAPVTAE CGHSFCRACL SRVAGEPAAD ENSP00000312675/1-477 --MSAAPGLL HQELSCPLCL QLFDAPVTAE CGHSFCRACL GRVAGEPAAD bmy_00720T0/1-478 --MSAAPGLL HQELSCPLCL QLFDAPVTAE CGHSFCRACL GRVAGEPAAD BACU011959/1-430 --MSAAPGLL HQELSCPLCL QLFDAPVTAE CGHSFCRACL GRVAGEPAAD 51 100 ENSBTAP00000037239/1-493 GTVLCPSCQA PTRPQALSTN LQLARLVEGL AQVPQGHCEE HLDPLSIYCE ENSP00000312675/1-477 GTVLCPCCQA PTRPQALSTN LQLARLVEGL AQVPQGHCEE HLDPLSIYCE bmy_00720T0/1-478 GTVLCPSCQA PTRPQALSTN QQLARLVEGL AQVPQGHCEE HLDPLSIYCE BACU011959/1-430 GTVLCPSCQA PTRPQALSTN QQLARLVEGL AQVPQGHCEE HLDPLSIYCE 101 150 ENSBTAP00000037239/1-493 QDRALVCGVC ASLGSHRGHR LLPAAEAHAR LKERLSSSIF ICKK-RMRDK ENSP00000312675/1-477 QDRALVCGVC ASLGSHRGHR LLPAAEAHAR LKTQLPQQKL QLQEACMRKE bmy_00720T0/1-478 QDRVLVCGVC ASLGSHRGHR LLPAAEAHAR LKTQLPQQKL QLQEACMRKE BACU011959/1-430 QDRVLVCGVC ASLGSHRGHR LLPAAEAHAR LKTQLPQQKL QLQEACMRKE 151 200 ENSBTAP00000037239/1-493 KPGVGQNTWV LGEEEGFVWF VHAEEDIFIQ LPTLRTRETL AALEGSLDRE ENSP00000312675/1-477 KSVAVLEHQL VEVEETVRQF RGAVGE---Q LGKMRV--FL AALEGSLDRE bmy_00720T0/1-478 KSVAVLEHQL VEVEETVRQF RGAVGE---Q LGKMRL--FL AALEGSLDRE BACU011959/1-430 KSVAVLEHQL VEVEETVRQF RGAVGE---Q LGKMRL--FL AALEGSLDRE 201 250 ENSBTAP00000037239/1-493 AERVRGEAGV ALRRELGSLN SYLEQLRQME KVLEEVADKP QTEFLMKYCL ENSP00000312675/1-477 AERVRGEAGV ALRRELGSLN SYLEQLRQME KVLEEVADKP QTEFLMKYCL bmy_00720T0/1-478 AERVRGEAGV ALRRELGSLN SYLEQLRQME KVLEEVADKP QTEFLMKYCL BACU011959/1-430 AERVRGEAGV ALRRELGSLN SYLEQLRQME KVLEEVADKP QTEFLMKYCL 251 300 ENSBTAP00000037239/1-493 VTSSWTLSQE KALKKYCKPN PNRRALN--- -QDDFKFQVW RKMFRALMPV ENSP00000312675/1-477 VTSRL----Q KILAE--SPP PARLDIQLPI ISDDFKFQVW RKMFRALMP- bmy_00720T0/1-478 VTSRL----Q KILAE--SPP PARLDIQLPV ISDDFKFQVW RKMFRALMP- BACU011959/1-430 VTSRL----Q KILAE--CPP PARLDIQLPV ISDDFKFQVW RKMFRALMP- 301 350 ENSBTAP00000037239/1-493 AARQELTFDP STAHPSLVLS NSGRCVECSE QKAPPAGEDP RQFDKAVAVV ENSP00000312675/1-477 -ALEELTFDP SSAHPSLVVS SSGRRVECSE QKAPPAGEDP RQFDKAVAVV bmy_00720T0/1-478 -ALQELTFDP STAHPSLVLG ASGRRVECSE QKVPPAGEDP RQFDKAVAVV BACU011959/1-430 -ALEELTFDP STAHPSLVLC ASGRRVECSE QKAPPAGEDP RQFDKAVAVV 351 400 ENSBTAP00000037239/1-493 THQLLSEGEH YWEVEVGDKP RWALGVIGAQ AGRRGRLHAV PSQGLWLLGL ENSP00000312675/1-477 AHQQLSEGEH YWEVDVGDKP RWALGVIAAE APRRGRLHAV PSQGLWLLGL bmy_00720T0/1-478 AHQLLSEGEH YWEVEVGDKP RWALGVIAAE AGRRGRLQAV PSQGLWLLGL BACU011959/1-430 AHQLLSEGEH YWEVE----- ---------- ---------- ---------- 401 450 ENSBTAP00000037239/1-493 RDGKILEAHV EAKEPRALRT PERRPTRIGI YLSFGDGVLS FYDASDPDAL ENSP00000312675/1-477 REGKILEAHV EAKEPRALRS PERRPTRIGL YLSFGDGVLS FYDASDADAL bmy_00720T0/1-478 REGKILEAHV EAKEPRALRT PERRPTRIGI YLSFCDGVLS FYDASDPDAL BACU011959/1-430 ---------- ---EPRALRT PERRPTRIGI YLSFCDGVLS FYDASDPDAL 451 500 ENSBTAP00000037239/1-493 ELLFAFHERL PGPVYPFFDV CWHDKGKNAQ PLLLVGPEPP GPFRLGGP ENSP00000312675/1-477 VPLFAFHERL PRPVYPFFDV CWHDKGKNAQ PLLLVGPEGA EA------ bmy_00720T0/1-478 ELLFAFHERL PGPVYPFFDV CWHDKGKNTQ PLLLVGPDGG GEA----- BACU011959/1-430 ELLFAFHERL PGPVYPFFDV CWHDKGKNTQ PLLLVGPDGG GEA-----