KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:47:26 2014 Check: 00 .. Name: ENSP00000435565/1-1641 Len: 1716 Check: 8420 Weight: 1.00 Name: ENSBTAP00000037251/1-1652 Len: 1716 Check: 1303 Weight: 1.00 Name: bmy_07574T0/1-883 Len: 1716 Check: 596 Weight: 1.00 Name: ENSTTRP00000006077/1-613 Len: 1716 Check: 150 Weight: 1.00 // 1 50 ENSP00000435565/1-1641 MTESSMKKLA STLLDAITDK DPLVQEQVCS ALCSLGEARP VETLRACEEY ENSBTAP00000037251/1-1652 MSETYAKRLS AILLDAVTDK DPQMQEQVCG ALCDFGESKP AEVLSACEEH bmy_07574T0/1-883 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006077/1-613 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000435565/1-1641 LRQHDKLAHP YRAAVLRAME RVLSSRASEL DKDTASTIIL LASSEMTKTK ENSBTAP00000037251/1-1652 LRLHEKLAHP YRTIILRAME IVVSNHISEL DKDTARAIIL LASNEMTKVK bmy_07574T0/1-883 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006077/1-613 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000435565/1-1641 DLVWDWQQAA SGVLVAVGRQ FISKVMEELL RRLHPGTLPH CAVLHTLASL ENSBTAP00000037251/1-1652 ELVSDWQQAA SSVLVAVGRR FISSVMEELL SKFQPGLLPH PCTVHTLASL bmy_07574T0/1-883 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006077/1-613 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000435565/1-1641 SVANAFGVVP FLPSVLSSLL PVLGVAKQDT VRVAFCSALQ RFSEGALEYL ENSBTAP00000037251/1-1652 SVSNVFGVVP FLTSILSTML PMLGAAKHDS MKVVFCCALQ RFSESILEYL bmy_07574T0/1-883 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006077/1-613 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000435565/1-1641 ANLDRAPDPT VRKDAFATDI FSAYDVLFHQ WLQSREAKLR LAVVEALGPM ENSBTAP00000037251/1-1652 ANLDQAPDPT VRKDAFASDI FGAYDILFHQ WLQSGGAKLR LAVVEALGPM bmy_07574T0/1-883 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006077/1-613 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000435565/1-1641 SHLLPSERLE EQLPKLLPGI LALYKKHAET FYLSKSLGQI LEAAVSVGSR ENSBTAP00000037251/1-1652 SHLLPSEKLE EQLPKLLPRV LAFYKKHTET VHVSKSLGQI LEAAVSVGSR bmy_07574T0/1-883 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006077/1-613 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000435565/1-1641 TLETQLDALL AALHSQICVP VESSSPLVMS NQKEVLRCFT VLACSSPDRL ENSBTAP00000037251/1-1652 TLDIHLNSLL AALHAQICVP VESSSPLVMS NQKEVLRCFT VLACCSPDRL bmy_07574T0/1-883 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006077/1-613 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000435565/1-1641 LAFLLPRLDT SNERTRVGTL QVVRHVINSA AAQMEDKKPF ILSSMRLPLL ENSBTAP00000037251/1-1652 LAFLLPKLDT SNERTRVGTL QVLRHVINAA AAQMEVKKPV ILSSMKLPLL bmy_07574T0/1-883 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006077/1-613 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000435565/1-1641 DTNSKVKRAV VQVISAMAHH GYLEQPGGEA MIEYIVQQCA LPPEQEPEKP ENSBTAP00000037251/1-1652 DTNNKVKRAV VQVVSAMAHH GYLEQPGGKA MVEYIVQQCA LPPEAEIQKL bmy_07574T0/1-883 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006077/1-613 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000435565/1-1641 GPGSKDPKAD SVRAISVRTL YLVSTTVDRM SHVLWPYLLQ FLTPVRFTGA ENSBTAP00000037251/1-1652 GADSEALAAD SVRAISVSTL YLVSTTVDRM GEVLWPYLLE FLVPIRFTRA bmy_07574T0/1-883 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006077/1-613 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000435565/1-1641 LTPLCRSLVH LAQKRQEAGA DAFLIQYDAH ASLPSPYAVT GRLLVVSSSP ENSBTAP00000037251/1-1652 LSPLCRSLVH LAQKRQEAGA HAPLIQYNGN VHLPSPYAIT TRLLAVSSHP bmy_07574T0/1-883 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006077/1-613 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000435565/1-1641 YLGDGRGAAA LRLLSVLHPN IHPLLGQHWE TTVPLLLGYL DEHTEETLPQ ENSBTAP00000037251/1-1652 YVGDGRGAAS LRLLNVLHQD IHPALGQRWV TAIPLLLEHL DEYSEETLSQ bmy_07574T0/1-883 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006077/1-613 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000435565/1-1641 EEWEEKLLMF LRDTLAIISD NAWICQLSLE LCRQLPCYDE APQEKNFLYK ENSBTAP00000037251/1-1652 KEWEEKLLVF LRDSLAVVSD NTWVCHLTLE MCKQLPNYNG TPLEKNFLYK bmy_07574T0/1-883 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006077/1-613 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000435565/1-1641 CIGTTLGAAS SKEVVRKHLQ ELLETARYQE EAEREGLACC FGICAISHLE ENSBTAP00000037251/1-1652 CVGTTLGAAS SK-VVRKHLR ELLETARYQE EREHEGLACC FGICAISHLD bmy_07574T0/1-883 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006077/1-613 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000435565/1-1641 DTLAQLEDFV RSEVFRKSIG ILNIFKDRSE NEVEKVKSAL ILCYGHVAAR ENSBTAP00000037251/1-1652 DTLAQLDDFV KSDVLRKSAG IFNLFKNRSE SEANKVRSAL ILCYGHVAAG bmy_07574T0/1-883 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006077/1-613 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000435565/1-1641 APRELVLAKV ESDILRNICQ HFSTKVLGIK VETKDPALKL CLVQSVCMVS ENSBTAP00000037251/1-1652 APRELLLARV EADLFWNMSE CFSTKVLGIK VETQDPALRL SLVQSVCMAT bmy_07574T0/1-883 ---------- ---------- ---------- ---------- -------MAS ENSTTRP00000006077/1-613 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000435565/1-1641 RAICSSTQAG SFHFTRKAEL VAQMMEFIRA EPPDSLRTPI RKKAMLTCTY ENSBTAP00000037251/1-1652 QAICSSAHSS SFHLSRKAEL VAQMVEFIRA EPPDSLKTPI WKKAMLACTY bmy_07574T0/1-883 QAICSSSRGS SFQLLRKPEL VAQMMEFIKA EPPDSLRTPI RKKAMLACTY ENSTTRP00000006077/1-613 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000435565/1-1641 LVSVEPALDE QARADVIHGC LHSIMALLPE PKEED----- -------GGC ENSBTAP00000037251/1-1652 LVTLEPALEE QVQADLIHSC LHRVMAVLPE PEEGDSPQEV SAAPTVGGDP bmy_07574T0/1-883 LVSLEPALEG QAQADLIHSC LHGVMAVLPE PEGVD----- -------GN- ENSTTRP00000006077/1-613 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000435565/1-1641 QKSLYLETLH ALEDLLTSLL QRNMTPQGLQ IMIEHLSPWI KSPRGHERAR ENSBTAP00000037251/1-1652 QESLYLDTVQ VLKDLLTSLL LWNMTPLGLQ VMLEHLSPWI KSPRGHERVR bmy_07574T0/1-883 QEPLYLDTVQ ALKDLLTSLL QRNMTPQGLQ VMVEHLSPWI KSPRGHERAR ENSTTRP00000006077/1-613 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000435565/1-1641 ALGLSALLLR YFLEHLRVSA LVPFHNLGLL IGLFSPRCAD LWPATRQEAV ENSBTAP00000037251/1-1652 AVGLSACLLQ FFLQHLQISA LVPFHNLGLL IGLFSPRCAD LWPATRREAV bmy_07574T0/1-883 ALGLSACLLQ YFLKHLHIRA LVPFHNLGLL LGLFSPRCAD LRPATRQEAV ENSTTRP00000006077/1-613 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000435565/1-1641 DCVYSLLYLQ LGYEGFSRDY RDDVAERLLS LKDGLVHPDP AILFHTCHSV ENSBTAP00000037251/1-1652 SCIHSLLYLQ LTCVGFSRDY QDDVAEQLLS LKDGLVHPDP AILFHTCHSI bmy_07574T0/1-883 SCVYSLLYLQ LGYEGFSHDY RDDAVERLLA LRDGLGHPEP AILFHTCHSV ENSTTRP00000006077/1-613 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000435565/1-1641 GQIIAKRLPP DQLISLLLTM FEALGDPEKN CSRAATVMIN CLLQERGGVL ENSBTAP00000037251/1-1652 AQLIAKRLPP DQLINLLLTL FESLGDPDKN CSRAASVMIN CLLKERGNML bmy_07574T0/1-883 AQIIGKRLPP DQLISLLLTL FEGLGDPDKN CSRAATVIIN CLLKERANVL ENSTTRP00000006077/1-613 --IIGKRLPP DQLISLLLTL FEGLGDPDQN CSRAAAVIVN CLLKERGHVL 1101 1150 ENSP00000435565/1-1641 QEKVPEIVSV LRSKLQEAQG EHVLPAAQHS VYLLATQHCA AVVSSLLGSP ENSBTAP00000037251/1-1652 QEKVPEIVSV LRSKLQETQE EHILQAAQHS VFALATHHCA SVVSNLLGSP bmy_07574T0/1-883 LEKVPEIVSV LRSKLRETHG EHVLQAAQHS VYVLAARHHA AVVSSLLGSP ENSTTRP00000006077/1-613 LEKVPEIVSV LCSKLQETHG EHVLQAAQHS VYVLAARHHA AVVSSLLGSP 1151 1200 ENSP00000435565/1-1641 LPLDSHTCML WRALAVEPRL AAQVLGLLLE KMSRDVPFKE SRAFLLGRTP ENSBTAP00000037251/1-1652 LPFDSHTCTL WRALALEPGL AAQVLGLLLE KISKDVLFEE SQAFLLSSTP bmy_07574T0/1-883 LPFDSHTCTL WRALAVEPGL ATQVLGLLLE KMSRDVPFKE SRAFLLSSAP ENSTTRP00000006077/1-613 LPFDSHTCTL WRALAVEPGL ATQVLGLLLE KMSGDVPFKE SRAFLLSSAP 1201 1250 ENSP00000435565/1-1641 DRVATLLPLS ATCALFEVMS TPAAGPAVLE LYPQLFVVLL LRVSCTVGVQ ENSBTAP00000037251/1-1652 DRVATLLPLA ATCALHEVAS APASGPAVLE LYPQLFVALL LRVSCTVGVQ bmy_07574T0/1-883 DRVATLPPLA ATCALYEVAS APASGPAVLE LYPQLFAALL LRVSCTVGVQ ENSTTRP00000006077/1-613 DRVATLPPLA ATCALYEVAS APASGPAVLE LYPQLFAALL LRVSCTVGVQ 1251 1300 ENSP00000435565/1-1641 LPRNLQAQER RGASPALATR NLEPCSSAVD TLRSMLLRSG SEDVVQRMDL ENSBTAP00000037251/1-1652 PPRQLQAKER RSASSGLASR SLEPCSSAVD ALQAVLVRGG NEDVVQCMEL bmy_07574T0/1-883 LPRNLQAKER KSASSGLASR SLEPCSSAVD ALQAVLLRGG NDDVVQHMEL ENSTTRP00000006077/1-613 LPRNLQAKER KSASSGLASR SLEPCSSAVD ALRPVLLRGG NDDVVQRMEL 1301 1350 ENSP00000435565/1-1641 EGGWELLRTS AGHEEGATRL ARAMAEHAGP RLPLVLKTLA CTHSSAYENQ ENSBTAP00000037251/1-1652 DGGWQLLRTS AGHEEGVTRL ASAMAKFAGP RLPLVMKLLF TTQSSMYEVQ bmy_07574T0/1-883 EGGWQLLRTS AGHEEGVTRL ASAMAKFAGP RLPLMMKALF ATQSSVYEIQ ENSTTRP00000006077/1-613 EGGWQLLRTS AGHEEGVTRL ASAMAKFAGP RLPLMMKALF ATQSSVYEMQ 1351 1400 ENSP00000435565/1-1641 RVTTTAFLAE LLNSNVANDL MLLDSLLESL AARQKDTCAS VRRLVLRGLA ENSBTAP00000037251/1-1652 RVTSTAFLAE LLSSNVVNDL MLLESLLYNL MARQKDTSAR VRRLVLHGLA bmy_07574T0/1-883 RVSSTAFLAE LLSSNMVNDL MLLESLLDNL LARQKDMCAR VRRLVLRGLA ENSTTRP00000006077/1-613 RVSSTAFLAE LLSSNTVNDL MLLESLLDNL LARQKDTCAR VRRLVLRGLA 1401 1450 ENSP00000435565/1-1641 NLASGCPDKV RTHGPQLLTA MIGGLDDGDN PHSPVALEAM LGLARLVHLV ENSBTAP00000037251/1-1652 NITLGSPDKV QTHSPQLLTA MIGGLDDGDD PHSLVALEAM VGLARLMDLV bmy_07574T0/1-883 NIASGSPDKV RAHGPQLLTA MIGGLDDGDD PHSLVALEAM VGLARLLDLV ENSTTRP00000006077/1-613 NVASGSPDKV RAHGPQLLTA MIGGLDDGDD PHSLVALEAM VGLARLLDLV 1451 1500 ENSP00000435565/1-1641 ESWDLRSGLL HVAIRIRPFF DSEKMEFRTA SIRLFGHLNK VCHGDCEDVF ENSBTAP00000037251/1-1652 DAWDLHAVLL HIAVRIRPFF DSERMELRSV SIGLFGHLNK ACRGDCKDVF bmy_07574T0/1-883 EAWDLRSVLL HVAIRIRPFF DSEKMEFRSA SIRLFGHLNK ACQGDCEDVF ENSTTRP00000006077/1-613 EAWDLRSVLL HVAIRIRPFF DSEKVEFRSA SIRLFGHLNK ACQGDCEDVF 1501 1550 ENSP00000435565/1-1641 LDQVVGGLAP LLLHLQDPQA TVAS------ ---------- ---------- ENSBTAP00000037251/1-1652 LEQVVGGLVP LLLHLRDPHA PVVT------ ---------- ---------- bmy_07574T0/1-883 LEQVVGGLAP LLLHLQDPQP PVAAVSSQGG WAGRAGLTLS GTQGSACALQ ENSTTRP00000006077/1-613 LEQLVGGLAP LLLHLQDPQP PVAA------ ---------- ---------- 1551 1600 ENSP00000435565/1-1641 ACRFALRMCG PNLACEELSA AFQKHLQEGR ALHFGEFLNT TCKHL----- ENSBTAP00000037251/1-1652 ACRFALRMCG PNLECEELAA VFQRHLQEGH DLHFGEFLNT TCKHL----- bmy_07574T0/1-883 ACRFALRMCG PNLECEELAA IFQKHLQEGR GLHFGEFLNT TCKHLVRGGA ENSTTRP00000006077/1-613 ACRFALRMCG PNLECEELAA IFQKHLQEGR GLHFGEFLNT TCKHL----- 1601 1650 ENSP00000435565/1-1641 ---------- ---------- MHHFPDLLGR LLTTCLFYFK SSWENVRAAA ENSBTAP00000037251/1-1652 ---------- ---------- MRHFPDLLGR LLSTSLFYYK SSWEDVRAAA bmy_07574T0/1-883 AGHGRGGRAG AGPETEGLLQ MHHFPDLLGR LLSTSLFYFK SSWDDIRAAA ENSTTRP00000006077/1-613 ---------- ---------- MHHFPDLLXX XXXXXXXXXX XXXXXXXXXX 1651 1700 ENSP00000435565/1-1641 PLFTGFLVLH SEPRQQPQVD LDQLIAALQI LLKDPAPEVR ---------T ENSBTAP00000037251/1-1652 PMLTGFLVLH MEAEQRPQVD LEQLLTALQL LLKDPALKVR ---------L bmy_07574T0/1-883 PAPAGFLVLH VEAERRPQVD LEQLLA---- ----GEPQSW G--------P ENSTTRP00000006077/1-613 XXXXXXXXXX XXXXXXXXXX XXXXXRRVPG TARGGAPAAG GPGTAPGGTP 1701 1750 ENSP00000435565/1-1641 RAAEALGRLV KLA--- ENSBTAP00000037251/1-1652 KAVKTLGRLV KFA--- bmy_07574T0/1-883 RPPRRAGPR- ------ ENSTTRP00000006077/1-613 APAQGPGPRG ARESCG