KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:26 2014 Check: 00 .. Name: BACU019172/1-411 Len: 498 Check: 3306 Weight: 1.00 Name: ENSP00000332258/1-488 Len: 498 Check: 4408 Weight: 1.00 Name: ENSBTAP00000037256/1-485 Len: 498 Check: 3202 Weight: 1.00 Name: bmy_07570T0/1-366 Len: 498 Check: 6153 Weight: 1.00 Name: ENSTTRP00000006083/1-492 Len: 498 Check: 585 Weight: 1.00 // 1 50 BACU019172/1-411 ---------- ---------- SQGGSGPAAA AAEEEVR--- ---DVGAGGD ENSP00000332258/1-488 MGDR---GSS RRRRTGSRPS SHGGGGP--A AAEEEVRDAA AGPDVGAAGD ENSBTAP00000037256/1-485 MGDRGGAGGS RRRRTGSRPS IQGGSGP--A AAEEEVR--- ---DVGAGGD bmy_07570T0/1-366 MGDRSGASGS RRRRTGSRPS SQGGSGP-AA AAEEEVR--- ---DVGAGGD ENSTTRP00000006083/1-492 MGDRSGASGS RRRRTGSRPS SQGGSGPAAA AAEEEVR--- ---DVGAGGD 51 100 BACU019172/1-411 APAPEKDKDG DVDVGSGQWD LRCHRLQDSL FSSDSGFNNY RGILNWCVVM ENSP00000332258/1-488 APAPAPNKDG DAGVGSGHWE LRCHRLQDSL FSSDSGFSNY RGILNWCVVM ENSBTAP00000037256/1-485 APVRDTDKDG DVDVGSGHWD LRCHRLQDSL FSSDSGFSNY RGILNWCVVM bmy_07570T0/1-366 APAPEKDKDG DVDVGSGQWD LRCHRLQDSL FSSDSGFNNY RGILNWCVVM ENSTTRP00000006083/1-492 APAPEKDKDG DVDVGSGQWD LRCHRLQDSL FSSDSGFNNY RGILNWCVVM 101 150 BACU019172/1-411 LILSNARLFL ENLIKYGILV DPIQVVSLFL KDPYSWPALC LVIVANVFAV ENSP00000332258/1-488 LILSNARLFL ENLIKYGILV DPIQVVSLFL KDPYSWPAPC LVIAANVFAV ENSBTAP00000037256/1-485 LILSNARLFL ENLIKYGILV DPIQVVSLFL KDPYSWPALC LVIVANIFAV bmy_07570T0/1-366 LILSNARLFL ENLIKYGILV DPIQVVSLFL KDPYSWPALC LVIVANVFAV ENSTTRP00000006083/1-492 LVLSNARLFL ENLIKYGILV DPIQVVSLFL KDPYSWPALC LVIVANVFAV 151 200 BACU019172/1-411 AAFQVEKRLA VGALTEQAGL LLHVVNLATI LCFPAAVAFL LASITPVGSV ENSP00000332258/1-488 AAFQVEKRLA VGALTEQAGL LLHVANLATI LCFPAAVVLL VESITPVGSL ENSBTAP00000037256/1-485 AAFQVEKRLA VGALTEQAGL LLHGVNLATI LCFPAAVAFL LESITPVGSV bmy_07570T0/1-366 AAFQVEKRLA VGALTEQAGL LLHVVNLATI LCFPAAVAFL LESITPVGSV ENSTTRP00000006083/1-492 AAFQVEKRLA VGALTEPAGL LLHVVNLATI LCFPAAVALL LESITPVGSV 201 250 BACU019172/1-411 LALMVYTILF LKLCSYRDVN LWCR-ERRAR AKAKAAPAGK KANGGAAQCT ENSP00000332258/1-488 LALMAHTILF LKLFSYRDVN SWCR-----R ARAKAASAGK KASSAAAPHT ENSBTAP00000037256/1-485 LALMVYTILF LKLFSYRDVN LWCR-ERRAG AKAKAALAGK AANGGAAQRT bmy_07570T0/1-366 LALMVYTILF LKLFSYRDVN LWCR-ERRAR AKAKAAAAGK KANGGAAQCT ENSTTRP00000006083/1-492 LALMAYTILF LKLFSYRDVN LWCRQQRRAR AKAKAAAAGK KANGGAAQCT 251 300 BACU019172/1-411 VSYPDNLTYR DLYYFLFAPT LCYELNFPRS ARIRKRFLLR RLLEMV---R ENSP00000332258/1-488 VSYPDNLTYR DLYYFLFAPT LCYELNFPRS PRIRKRFLLR RILEMLFFTQ ENSBTAP00000037256/1-485 VSYPDNLTYR DLYYFLFAPT LCYELNFPRS PRIRKRFLLR RLLEMLFLTQ bmy_07570T0/1-366 VSYPDNLTYR DLYYFLFAPT LCYELNFPRS ARIRKRFLLR RLLEMLFLTQ ENSTTRP00000006083/1-492 VSYPDNLTYR DLYYFLFAPT LCYELNFPRS ARIRKRFLLR RLLEMLFLTQ 301 350 BACU019172/1-411 LEAGGLAGW- ---------- --GATGHWG- ------AQPA VLCFLLQLF- ENSP00000332258/1-488 LQVGLIQQWM VPTIQNSMKP FKDMDYSRII ERLLKLAVPN HLIWLIFFYW ENSBTAP00000037256/1-485 LQVGLIQQWM VPAIQNSMKP FKVSRQAWQV GS----GVPN HLIWLIFFYW bmy_07570T0/1-366 LMVGLIQQWM VPTIQNSMKP FKDMDYSRII ERLLKLAVPN HLIWLIFFYW ENSTTRP00000006083/1-492 LMVGLIQQWM VPTIQNSMKP FKDMDHSRII ERLLKLAVPN HLIWLIFFYW 351 400 BACU019172/1-411 --------LT QLM------- ---------V GLF------- -----SRHFY ENSP00000332258/1-488 LFHSCLNAVA ELMQFGDREF YRDWWNSESV TYFWQNWNIP VHKWCIRHFY ENSBTAP00000037256/1-485 LFHSCLNAVA ELMQFGDREF YRDWWNSESI TYFWQNWNIP VHKWCIRHFY bmy_07570T0/1-366 LFHSCLNAVA ELMHFGDREF YRDW------ ---------- ---------- ENSTTRP00000006083/1-492 LFHSCLNAVA ELMHFGDREF YRDWWNSESV TYFWQNWNIP VHKWCLRHFY 401 450 BACU019172/1-411 KPMLRRGSSK WAARMGVFLA SAFFHEYLVS IPLRMFRLWA FTGMMAQIPL ENSP00000332258/1-488 KPMLRRGSSK WMARTGVFLA SAFFHEYLVS VPLRMFRLWA FTGMMAQIPL ENSBTAP00000037256/1-485 KPMLRRGSSK WAARTAVFLA SAFFHEYLVS IPLRMFRLWA FTGMMAQIPL bmy_07570T0/1-366 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006083/1-492 KPMLRKGSSK WVARTGVFLA SAFFHEYLVS VPLRMFRLWA FTGMMAQIPL 451 500 BACU019172/1-411 AWRGGRFFRG NYGNAAVWLT LIIGQPVAVL MYVHDYYVLN YEAPTAGA ENSP00000332258/1-488 AWFVGRFFQG NYGNAAVWLS LIIGQPIAVL MYVHDYYVLN YEAPAAEA ENSBTAP00000037256/1-485 AWIVGRFFRG NYGNAAVWLS LIIGQPVAVL MYVHDYYVLN REAPAAGT bmy_07570T0/1-366 ---------- ---------- ---------- ---------- -------- ENSTTRP00000006083/1-492 AWIVGRFFRG NYGNAAVWLT IIIGQPVAVL MYVHDYYVLN HEAPTAAA