KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:27 2014 Check: 00 .. Name: ENSP00000379531/1-1006 Len: 1011 Check: 1373 Weight: 1.00 Name: ENSTTRP00000002298/1-1005 Len: 1011 Check: 550 Weight: 1.00 Name: ENSBTAP00000037277/1-996 Len: 1011 Check: 8946 Weight: 1.00 Name: bmy_06283T0/1-807 Len: 1011 Check: 9627 Weight: 1.00 Name: BACU012915/1-1006 Len: 1011 Check: 9398 Weight: 1.00 // 1 50 ENSP00000379531/1-1006 MSAYYRNNWS EEDPDYPDYS GSQNRTQGYL KTQGYPDVPG PLNNPDYPGT ENSTTRP00000002298/1-1005 MSA-YRNNAY EEDPAYPDYY GSRNHTRGYL KTQDYPDSPG PPNNSDDPST ENSBTAP00000037277/1-996 MFA-YRNSAY EEDPDYPDYS GSQNHTQRYL KS------PG PLNNSDEPST bmy_06283T0/1-807 MSA-YRNNAY EEDPDYPDYY GSQNQTRGYL KTQDYPDSPG PLNNSDDPST BACU012915/1-1006 MSA-YRNNAY EEDPDYPDYY GSQNHTRGYL KTQHYPDPPG PLNNSDDPST 51 100 ENSP00000379531/1-1006 RSNPYSVASR TRPDYPGSLA EPNYPRSLSN PDYSGTRSNA YSAASRTSPD ENSTTRP00000002298/1-1005 RSNPYSADSR TSPDYPGSLA EPDYPRSRRN PYYPGTRSNP YSTGSG-SPD ENSBTAP00000037277/1-996 RSNPYPAESR TSPDYLGSLA EPDYPGCQSN PDYPGTTSHP YSAGT----D bmy_06283T0/1-807 RSNPYSAHSR TSPDYPGSLA EPDYPGSWSN PDYPGTRSNP YSAGSR-SPD BACU012915/1-1006 RSNPYSADSR TSPDYPGALA EPDYPGSWSN PDYPGTGSNP YSAGSR-RPD 101 150 ENSP00000379531/1-1006 HPTSLPEPDY SEFQSHPYHR ASSRQPDYPG SQRNPDFAGS SSSGNYAGSR ENSTTRP00000002298/1-1005 NPKSLAEPEY PGSWSNPYRP GSSREPDSSE SRRNPDLAGS RGSGNYTGSR ENSBTAP00000037277/1-996 YPKPLAEPEY IGSRRNPYQP GSSGEPDYSQ FQQNPDFPGS KGSGNYTGSR bmy_06283T0/1-807 NPKSLAEPDY IGSWSNPYHP GSSREPDYFE SQRNPDFAGS KGNGNYAGSR BACU012915/1-1006 NPKSLAEPDY IGSWSNPYHP GSSREPDYSA SQRNPDFAGS KGSGSYAGSR 151 200 ENSP00000379531/1-1006 THPDHFGSL- EPDYPGAQSN SDHPGPRANL NHPGSRKNLE HTSFRINPYA ENSTTRP00000002298/1-1005 TNPAYLDSLG EPDYAGAQGS SNYAGPGANS NHPDSRRNPE HAGSRISPYI ENSBTAP00000037277/1-996 INPDYLDSLG EPDYPGAQEN LNSSGPRASS NHPGSRRNPE HASPRVKAYT bmy_06283T0/1-807 TNPDYLDSLG EPDYAGAQGN SNYSGPRANS NHPDSRRNPE YAGSRINPYI BACU012915/1-1006 TNPDYLDSLG EPDYVGAQGN SNYPGPGANS NHPDSRRNPE YAGSRINPYI 201 250 ENSP00000379531/1-1006 DSLGKPDYPG ADIQPNSPPF FGEPDYPSAE DNQNLPSTWR EPDYSDAENG ENSTTRP00000002298/1-1005 DAPGAPDYPD AENQSSYPDF LGEPDYPGAQ DYRSSTEFWG EPDYPGAENA ENSBTAP00000037277/1-996 DSLGEPDYPG AESQSNHPHF FGEPDYLGAE DHRNSPNFWG EPDYPGAENG bmy_06283T0/1-807 DTLGEPDYPD AENQSNSPNF FGEPDYPGAE DYRNSTKFWG DPDYPGAEND BACU012915/1-1006 DTLGEPDYPD AENQSNSPDF FGKPDYPGAE DYGNSTKFWG EPDYPGAENG 251 300 ENSP00000379531/1-1006 HDYGSSETPK MTRGVLSRTS SIQPSFRHRS DDPVGSLWGE N-DYPEGIEM ENSTTRP00000002298/1-1005 HDYSSSENPE MTREMLSRAS SVQPSFHREG DSPFGILGRK DGDY-ESIEM ENSBTAP00000037277/1-996 HDYGSSEDPE MARQMLSRTS SVQPSFHHEG VGPLGILGRE DVDYPESIEM bmy_06283T0/1-807 HDYGSSENPE MTREMLSRAS SIQPSXHREG EDPLGILGRK DGDYPESIEM BACU012915/1-1006 HDYGSSENPE MTREMLSRAS SIQPSFHREG DDPFGILGRK DGDYPESIEM 301 350 ENSP00000379531/1-1006 ASMEMANSYG HSLPGAPGSG YVNPAYVGES GPVHAYGNPP LSECDWHKSP ENSTTRP00000002298/1-1005 KSRETANPYS PSVPGAPGNG YVDPAYVGDN GLSQAYGDPP LSGHDWHKSP ENSBTAP00000037277/1-996 KSVGMANPY- ---PGAPGNG YVNPAYVGDE GPGPAYGDPP LSGHDWLSSP bmy_06283T0/1-807 KSREMANPYS PSVPGAPGNG YVNPAYVGDN GLSQAYGDPP LSGHDWHTSP BACU012915/1-1006 KSREMANPYS PSVAGAPGSG YVNPAYVGDN GLSQAYGDPP LSGHDWHTSP 351 400 ENSP00000379531/1-1006 QGQKLIASLI PMTSRDRIKA IRNQPRTMEE KRNLRKIVDK EKSKQTHRIL ENSTTRP00000002298/1-1005 QGQKLIASLI PMTFRDRIKT IRNQPRTMEE KRNLRKMVDK EKSKQPRRIL ENSBTAP00000037277/1-996 QGQKLIESLI TMTSRDRIKA IRNQPRTMEE KRNLRKMVDK EKSKKSRRIL bmy_06283T0/1-807 QGQKLIASLI PMTSRDRIKA IRNQPRTMEE KRNL------ ---------- BACU012915/1-1006 QGQKLIASLI PMTSGDRIKA IRNQPRTMEE KRNLRKIVDK EKSKQPRRIL 401 450 ENSP00000379531/1-1006 QLNCCIQCLN SISRAYRRSK NSLSEILNSI SLWQKTLKII GGKFGTSVLS ENSTTRP00000002298/1-1005 EFNGCAQCLN SISLAYRRSK NSLSELFNSI SLWQKTFKVI GGKFGTSVLS ENSBTAP00000037277/1-996 ELNCCAQCLN SISLAYRRFK NNLSELLNSI SLWQKTLKVI GGKFGTSVLS bmy_06283T0/1-807 ---------- ---------- -------SSI SLWQKTLKVI GGKFGTSVLS BACU012915/1-1006 ELIGCAQCLN SISLACRRSK NSLSELFSSI SLWQKTLKVI GGKFGTSVLS 451 500 ENSP00000379531/1-1006 YFNFLRWLLK FNIFSFILNF SFIIIPQFTV AKKNTLQFTG LEFFTGVGYF ENSTTRP00000002298/1-1005 YFNFLRWLLK FNIFLFIVTF SFIIIPQLTM AKKNHLQFTG LEFLTGAGYF ENSBTAP00000037277/1-996 YFNFLRWLLK FNIFSFIVTF SFIIIPQLTV MEKNHLQFTG LEFLTGAGYF bmy_06283T0/1-807 YFNFLRWLLK FNIFLFIVTF SFIIIPQLTM AEKNHLQFTG LEFLTGAGYF BACU012915/1-1006 YFNFLRWLLK FNIFLFIVTF SFIIIPQLTM AEKNHLRFTG LEFLTGAGYF 501 550 ENSP00000379531/1-1006 RDTVMYYGFY TNSTIQHGNS GASYNMQLAY IFTIGACLTT CFFSLLFSMA ENSTTRP00000002298/1-1005 SDTVMYYGFY TNTENQHGSS GTSYNMQLAY IFTVGACLVV CFFSLLFTMA ENSBTAP00000037277/1-996 TNTVMYYGFY TNSTIQHDNS GASYNMQLAY IFTIGGCLVV CFFSLLFSMA bmy_06283T0/1-807 RDTVMYYGFY TNTTTQHGNS GTSYNMQLAY IFTIGACLVV CFFSLLFSMA BACU012915/1-1006 TDTVMYYGFY TNTANQHGNS GTSYNMQLAY IFTIGACLVV CFFSLLFSMA 551 600 ENSP00000379531/1-1006 KYFRNNFINP HIYSGGITKL IFCWDFTVTH EKAVKLKQKN LSTEIRENLS ENSTTRP00000002298/1-1005 RYFRNNFINP HIYSRGIAKL IFCWDFTVTH KSAVKLKQKN LSTEIRENLS ENSBTAP00000037277/1-996 RYFRNNFINP HIYSRGIAKL IFCWDFTVTH ESAVKLKQKN LSTEIRENLS bmy_06283T0/1-807 RYFRNNFINP HIYSRRIAKL IFCWDFTVTH ESAVKLKQKN LSTEIRENLS BACU012915/1-1006 RYFRNNLINP HIYSRRIAKL IFCWDFTVTH ESAVKLKQKN LSTEIRENLS 601 650 ENSP00000379531/1-1006 ELRQENSKLT FNQLLTRFSA YMVAWVVSTG VAIACCAAVY YLAEYNLEFL ENSTTRP00000002298/1-1005 EIRQENVKLT LNQQLIRFSA HLAAWVVSIG VTIACCVAVY YLAEKNTEFL ENSBTAP00000037277/1-996 EILQENVKLT FNQQFIRFSA HVAAWVVSSG VAITCCAAVY YLAENNLQFL bmy_06283T0/1-807 EIRQEKVKLT LNQRLIRFAA HLAAWVVSTG VGIACCTAVY YLAENNSEFL BACU012915/1-1006 EIRQEKVKLT LNQRLIRFAA HLAAWVVSTG VSIACCTAVY YLAENNSEFV 651 700 ENSP00000379531/1-1006 KTHSNPGAVL LLPFVVSCIN LAVPCIYSMF RLVERYEMPR HEVYVLLIRN ENSTTRP00000002298/1-1005 ANHSNPGEVL LLPFVVSCIN LVMPRFYSMF RLVERYEMPR HEVYSLLIRX ENSBTAP00000037277/1-996 ANHSNPGAVL LLPFVVSCIN LVVPRFYSMF RLVERYEMPR HEVYTLLIRN bmy_06283T0/1-807 ANHRNPGAVL LLPFVVSCIN LVVPRFYSMF RLVEHYEMPR HEVSILLIRR BACU012915/1-1006 ANHGNPGAVL LLPFVVSCIN LVVPRFYSMF RLVEHYEVPR HEVCVLLIRN 701 750 ENSP00000379531/1-1006 IFLKISIIGI LCYYWLNTVA LSGEECWETL IGQDIYRLLL MDFVFSLVNS ENSTTRP00000002298/1-1005 XXXXXXXXXX XXXXXXXXXX XXXXXCWETL IGQEIYRLLL MDFVFSLTDS ENSBTAP00000037277/1-996 IFLKISIIGI LCYYWLNTVA LNSEECWETL IGQEIYRLLL MDFVFSLADS bmy_06283T0/1-807 ELM------- ---------- ---------- ----VWVLNS LHF------- BACU012915/1-1006 ILVKLPIIGI LCHYWLNTVA VSGDECWETL IGQEIYRLLL MDFVFSLADS 751 800 ENSP00000379531/1-1006 FLGEFLRRII GMQLITSLGL QEFDIARNVL ELIYAQTLVW IGIFFCPLLP ENSTTRP00000002298/1-1005 LLGEFLRRII GLRLITSLGR QEFDIARNVL ELIYSQTLVW IGIFFCPLLP ENSBTAP00000037277/1-996 LLGEFLRRII GMRLITSLGL QEFDIARNVL ELIYAQTLVW IGTFFCPLLP bmy_06283T0/1-807 ------HRII GMHLIPSLGL QEFDIARNVL ELIYAQTLVW IGIFFCPLLP BACU012915/1-1006 FLGEFLRRII GMRLIPSLGL QEFDIARNVL ELIYSQTLVW IGIFFCPLLP 801 850 ENSP00000379531/1-1006 FIQMIMLFIM FYSKNISLMM NFQPPSKAWR ASQMMTFFIF LLFFPSFTGV ENSTTRP00000002298/1-1005 FIQMMTLFIM FYVKNISLMM NFQPLSKAWR ASQMMTVFIF LLFFPSFTGA ENSBTAP00000037277/1-996 FIQMITLFIM FYVKNISLMM NFQPPSKAWR ASQMMTFFIF LLFFPSFTGV bmy_06283T0/1-807 FIQMITLFIM FYVKNVSQS- ---------- ---------- ----EGGTNR BACU012915/1-1006 LIQMITLFIM FYVKNISLMM NFQPLSKAWQ ASQMMTLFIF LLFFPSFTGA 851 900 ENSP00000379531/1-1006 LCTLAITIWR LKPSADCGPF RGLPLFIHSI YSWIDTLSTR PGYLWVVWIY ENSTTRP00000002298/1-1005 LCTLAITIWX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000037277/1-996 LCTLAITIWR LKPSADCGPF RGLSFFIESI YRWINTLNQT PSYLWVVWIY bmy_06283T0/1-807 LCSV------ --PCDTVVAG RGQR------ ---------- ---------- BACU012915/1-1006 LCTLAITIWR LKPSADCGPF RGLCVFIKSI YKWIDTLSEK PSCLWVVWIY 901 950 ENSP00000379531/1-1006 RNLIGSVHFF FILTLIVLII TYLYWQITEG RKIMIRLLHE QIINEGKDKM ENSTTRP00000002298/1-1005 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXEGKDKM ENSBTAP00000037277/1-996 QNLIGSVHFF FILTLIVLII TYLYWQITEG RKIMIRLLHE QIINEGKDKM bmy_06283T0/1-807 ---------- ---------- -----QNVPD RKV------D QAAGYGE--- BACU012915/1-1006 QNLVGSVHFF FILTLIVLII TYLYWQITEG RKIMIRLLHE QIINEGKDKM 951 1000 ENSP00000379531/1-1006 FLIEKLIKLQ DMEKKANPSS LVLERREVEQ QGFLHLGEHD GSL---DLRS ENSTTRP00000002298/1-1005 FLIEKLIKLQ DMEKRASPTL FTPDTRDVEQ SGPLRVREHD AAR---DLRF ENSBTAP00000037277/1-996 FLIDKLIKLQ GMEKRANPTL FTLERRDLEQ WGPQRVRQHD APRANPDLRF bmy_06283T0/1-807 ---------- --ESKPHLVY ARKERRGGEA GSHLGIPVTQ MCP---P--- BACU012915/1-1006 FLIEKLIKLQ DMEKRASPTL FTPERRDVEQ SGPLCVREHA AAR---DLRF 1001 1050 ENSP00000379531/1-1006 RRSVQEGNPR A ENSTTRP00000002298/1-1005 RRSVQEDNPK A ENSBTAP00000037277/1-996 RQSFQEDNPK A bmy_06283T0/1-807 GKSASGN--- - BACU012915/1-1006 RRSVQEDNPK A