KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:47:29 2014 Check: 00 ..
Name: ENSTTRP00000013815/1-431 Len: 849 Check: 7449 Weight: 1.00
Name: BACU012950/1-428 Len: 849 Check: 4731 Weight: 1.00
Name: bmy_06511T0/1-393 Len: 849 Check: 510 Weight: 1.00
Name: ENSP00000456480/1-813 Len: 849 Check: 8341 Weight: 1.00
Name: ENSBTAP00000037293/1-775 Len: 849 Check: 52 Weight: 1.00
//
1 50
ENSTTRP00000013815/1-431 ---------- ---------- ---------- ---------- ----------
BACU012950/1-428 ---------- ---------- ---------- ---------- ----------
bmy_06511T0/1-393 --------MK RQFLLERLLD AVKQCQIRFG GRKEIASDSD SRVTCLCAQF
ENSP00000456480/1-813 MSGSQNND-K RQFLLERLLD AVKQCQIRFG GRKEIASDSD SRVTCLCAQF
ENSBTAP00000037293/1-775 MSGTQNNDMK RQFLLERLLD AVKQCQIRFG GRKEIASDSD SRVTCLCAQF
51 100
ENSTTRP00000013815/1-431 ---------- ---------- ---------- ---------- ----------
BACU012950/1-428 ---------- ---------- ---------- ---------- -MHAPQRGPT
bmy_06511T0/1-393 EAVLQHGLKR SRGLALTAAA IKQAAGFASK TETATSEELV WNRPPGSGQL
ENSP00000456480/1-813 EAVLQHGLKR SRGLALTAAA IKQAAGFASK T--------- ----------
ENSBTAP00000037293/1-775 EAVLQHGLKR SRGLALTAAA IKQAAGFASK T--------- ----------
101 150
ENSTTRP00000013815/1-431 ---------- ---------- ---------- ---------- ----------
BACU012950/1-428 V--------- ---SAEPVFW FYVKEVLSKH ELQRFYALHH IASDVGRGRA
bmy_06511T0/1-393 LGMAEATLAL ESDSEEPVFW FYVKEVLSKH ELQRFYALHH IASDVGRGRA
ENSP00000456480/1-813 ---------- ---ETEPVFW YYVKEVLNKH ELQRFYSLRH IASDVGRGRA
ENSBTAP00000037293/1-775 ---------- ---ETEPVFW FYVKEVLSKH ELQRFHALRH IASDVGRGRA
151 200
ENSTTRP00000013815/1-431 ---------- ---------- ---------- ---------- ----------
BACU012950/1-428 WLRCALNEHS LERYLHMLLA DHSRLSTFYE DWAFVMDEER SSMLPTMAAG
bmy_06511T0/1-393 WLRCALNEHS LERYLHMLLA DHSRLSV--- ----TVEQQT HQAXPFLGAG
ENSP00000456480/1-813 WLRCALNEHS LERYLHMLLA DRCRLSTFYE DWSFVMDEER SSMLPTMAAG
ENSBTAP00000037293/1-775 WLRCALNENS LERYLHMLLA DRGRLSTFYE DWAFVMDEER SSMLPTMAAG
201 250
ENSTTRP00000013815/1-431 ---------- ---------- ---------- ---------- ----------
BACU012950/1-428 LNSILFAINI DNKDLNGQSK FAPTVSDLLK ESTQNVTSLL KESTQGVSSL
bmy_06511T0/1-393 LNSILFAINI DNKDLNGQSK FAPTVSDLLK ESTQNVTSLL KESTQGVSSL
ENSP00000456480/1-813 LNSILFAINI DNKDLNGQSK FAPTVSDLLK ESTQNVTSLL KESTQGVSSL
ENSBTAP00000037293/1-775 LNSILFAINI DNKDLNGQSK FAPTVSDLLK ESTQNVTSLL KESTQGVSSL
251 300
ENSTTRP00000013815/1-431 ---------- ---------- ---------- ---------- ----------
BACU012950/1-428 FREITASSAV SILIRPEQET DPLPVVSKHV SADAKCKRER KKKKKVTNII
bmy_06511T0/1-393 FREITASSAV SILIRPEQET DPLPVVSKHV SADAKCKRER KKKKKVTNII
ENSP00000456480/1-813 FREITASSAV SILIKPEQET DPLPVVSRNV SADAKCKKER KKKKKVTNII
ENSBTAP00000037293/1-775 FREITASSAV SILSRAEQET DPLPVVSKHV SADAKCKRER KKKKKVTNII
301 350
ENSTTRP00000013815/1-431 ---------- ---------- ---------- ---------- ----------
BACU012950/1-428 SFDDEEDEQS SGDVSKKIPG AGESSEENSD RSSVSIMTAF ESPFGPNSNG
bmy_06511T0/1-393 SFDDEEDEQS SGDVSKKIPG AGESSEENSD RSSVSIMTAF ESPFGPNSNG
ENSP00000456480/1-813 SFDDEEDEQN SGDVFKKTPG AGESSEDNSD RSSVNIMSAF ESPFGPNSNG
ENSBTAP00000037293/1-775 SFDDEEDEQS SGDVFKKIPG AGESSEENSD RSSINIMSAF ESPFGPNSNG
351 400
ENSTTRP00000013815/1-431 ---------- ---------- ---------- ---------- ----------
BACU012950/1-428 SQSSNSWKID SLSLNGEFGY QKLDVKSIDD EDVDENEDDV YGSTPGKKCP
bmy_06511T0/1-393 SQSSNSWKID SLSLNGEFGY QKLDVKSIDD EDVDENEDDV YGSTPGKKCP
ENSP00000456480/1-813 SQSSNSWKID SLSLNGEFGY QKLDVKSIDD EDVDENEDDV YGNSSGRKHR
ENSBTAP00000037293/1-775 SQGSNSWKID SLSLNGEFGY QKLDVKSIDD EDADENEDDV CGSMPGRKRP
401 450
ENSTTRP00000013815/1-431 ---------- --------MH SWAPLHVLHG DADVLFPVSG VGSYGPADTP
BACU012950/1-428 GHSESLEKPL DGGACLSRMH SWAPLHVLHG DTDVLFPVGG VGAYGPADTH
bmy_06511T0/1-393 GHSESPEK-- ---------- ---------- ---------- ----------
ENSP00000456480/1-813 GHSESPEKPL EGNTCLSQMH SWAPLKVLHN DSDILFPVSG VGSYSPADAP
ENSBTAP00000037293/1-775 GHSESPEKPL DAGTCLSQMH GWAPLQVLHG HAEVLFPVSG VGSYGPADAP
451 500
ENSTTRP00000013815/1-431 LGSLENGTGP DDHVLPEPGP RYSVEASPPG QGSPLSSLLP SASVPESMTI
BACU012950/1-428 LGSLENGTGP DDHVLSEPGP RYSVEASPPG QGSPLSSLLP SASVPESMTI
bmy_06511T0/1-393 ---------- ---------- ---------- ---------- ----------
ENSP00000456480/1-813 LGSLENGTGP EDHVLPDPGL RYSVEASSPG HGSPLSSLLP SASVPESMTI
ENSBTAP00000037293/1-775 LGSLENGTGP EDHILPEPGP RYSVEASPPG QESPLSSLLP SASVPESMTV
501 550
ENSTTRP00000013815/1-431 SELRQAIVAM MTRKDELEEE NRSLRNLLDG EMEHSAVLRQ EVDTLKRKVA
BACU012950/1-428 KHMTFATLGV LFIVDGLGNF TRG------- ---------- ----------
bmy_06511T0/1-393 ---------- ---------- ---------- ---------- ----------
ENSP00000456480/1-813 SELRQATVAM MNRKDELEEE NRSLRNLLDG EMEHSAALRQ EVDTLKRKVA
ENSBTAP00000037293/1-775 SDLRQAIVAM MNRKDELEEE NRSLRNLLDG EMEHSAALRQ EVDTLKRKVA
551 600
ENSTTRP00000013815/1-431 EQEERHVTKI QALARENEVL KVQLKKYVGA VQMLKREGQT AEVVPNLWNV
BACU012950/1-428 ---------- ---------- ---------- ---------- ----------
bmy_06511T0/1-393 ---------- ---------- ---------- ---------- ----------
ENSP00000456480/1-813 EQEERQGMKV QALARENEVL KVQLKKYVGA VQMLKREGQT AE-VPNLWSV
ENSBTAP00000037293/1-775 EQEERHVTKV QALARENEVL KVQLKKYVGA VQMLKREGQT AEVVPNLWNI
601 650
ENSTTRP00000013815/1-431 DGEVTVTDQK PGEVAEELAS SYERKLIEVA EMHGELIEFN ERLHRALVAK
BACU012950/1-428 ---------- ---------- ---------- ---------- ----------
bmy_06511T0/1-393 ---------- ---------- ---------- ---------- ----------
ENSP00000456480/1-813 DGEVTVAEQK PGEIAEELAS SYERKLIEVA EMHGELIEFN ERLHRALVAK
ENSBTAP00000037293/1-775 DGEVTVPEQK PGEVAEELAS SYERKLIEVA EMHGELIEFN ERLHRALVAK
651 700
ENSTTRP00000013815/1-431 EALVSQMRQE LIDLRGPVPG DLSQTSEDQS LSDFETSNRA LINVWIPSVF
BACU012950/1-428 ---------- ---------- ---------- ---------- ----------
bmy_06511T0/1-393 ---------- ---------- ---------- ---------- ----------
ENSP00000456480/1-813 EALVSQMRQE LIDLRGPVPG DLSQTSEDQS LSDFEISNRA LINVWIPSVF
ENSBTAP00000037293/1-775 EALVSQMRQE LIDLRGPVPG DLSQTSEDQS LSDFEISNRA LINVWIPSVF
701 750
ENSTTRP00000013815/1-431 LRGKAANAFH VYQXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
BACU012950/1-428 ---------- -YHLHIYLK- ---------- ---------- ----------
bmy_06511T0/1-393 ---------- ---------- ---------- ---------- ----------
ENSP00000456480/1-813 LRGKAANAFH VYQVYIRIKD DEWNIYRRYT EFRSLHHKLQ NKYPQVRAYN
ENSBTAP00000037293/1-775 LRGKAANAFH VYQVYIRIKD DEWNVYRRYA EFRTLHHKLQ NKYPQVRAFN
751 800
ENSTTRP00000013815/1-431 XXXXXXXXXX DAKFVEERRK QLQNYLRSVM NKVIQVVPEF AASPQKETLV
BACU012950/1-428 ---------- ---------- ---------- ---------- ----------
bmy_06511T0/1-393 ---------- ---------- ---------- ---------- ----------
ENSP00000456480/1-813 FPPKKAIGNK DAKFVEERRK QLQNYLRSVM NKVIQMVPEF AASPKKETLI
ENSBTAP00000037293/1-775 FPPKKAIGNK DAKFVEERRK QLQTYLRSVM NKVIQAVPEF TASPQKETLT
801 850
ENSTTRP00000013815/1-431 QLMPFFIDVT PPGEPLTKNS RPKVASRFPK LSRGHPRETR NVEPQSGDL
BACU012950/1-428 ---------- ---------- ---------- ---------- ---------
bmy_06511T0/1-393 ---------- ---------- ---------- ---------- ---------
ENSP00000456480/1-813 QLMPFFVDIT PPGEPV--NS RPKAASRFPK LSRGQPRETR NVEPQSGDL
ENSBTAP00000037293/1-775 QLMPFFL--- ---------- ---------- ---------- ---------