KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:29 2014 Check: 00 .. Name: ENSP00000380087/1-459 Len: 868 Check: 5407 Weight: 1.00 Name: ENSTTRP00000003819/1-451 Len: 868 Check: 6159 Weight: 1.00 Name: ENSBTAP00000037355/1-465 Len: 868 Check: 7267 Weight: 1.00 Name: bmy_02755T0/1-430 Len: 868 Check: 8810 Weight: 1.00 Name: BACU009176/1-854 Len: 868 Check: 3566 Weight: 1.00 // 1 50 ENSP00000380087/1-459 MAAPLEAQDQ APGEGEGLLI VKVEDSSWEQ ESAQHEDGRD SEACRQRFRQ ENSTTRP00000003819/1-451 MAAPPEPQDQ APGEGEGLLI VKVEDSSWEQ DAAQQEDSRD SEVCRQRFRQ ENSBTAP00000037355/1-465 MAAPPEPQDQ APEEGEGLLI VKIEDSSWEQ DSAQPEDHGD PEVCRQRFRQ bmy_02755T0/1-430 MAAPPEPQDQ APGEGEGLLI VKVEDSSWEQ DAAQQEDSRD SEACRQRFRQ BACU009176/1-854 MAAPPEPQDQ APGEGEGLLI VKVEDSSWEQ DAAQQEDSRD SEACRQRFRQ 51 100 ENSP00000380087/1-459 FCYGDVHGPH EAFSQLWELC CRWLRPELRT KEQILELLVL EQFLTVLPGE ENSTTRP00000003819/1-451 FCYGDAGGPH EAFSQLWELC CRWLRPELRT KEQILELLVL EQFLSVLPVG ENSBTAP00000037355/1-465 FCYGDAGGPH EAFSQLWELC CRWLRPELRT KEQILELLVL EQFLSVLPLG bmy_02755T0/1-430 FCYGDAGGPH EAFSQLWELC CRWLRPELRT KEQILELLVL EQFLSVLPVG BACU009176/1-854 FCYGDAGGPH EAFSQLWELC CRWLRPELRT KEQILELLVL EQFLSVLPVG 101 150 ENSP00000380087/1-459 IQGWVREQHP GSGEEAVALV EDLQKQPVKA WRQDVPSEEA EPEAAGRGSQ ENSTTRP00000003819/1-451 VQGWVCERCP GSGEEAVALV EDLQKQPVKA WPQDVPSEGA EPEAAVQGSQ ENSBTAP00000037355/1-465 VQDWVCQRCP GSGEEAVALV EDLQKQPVKA WSQDVPSERA EPEAAVQGSQ bmy_02755T0/1-430 VQGWVCERCP GSGEEAVALV EDLQKQPVKA WPQDVPSEGA EPEAAVQGSQ BACU009176/1-854 VQGWVCERCP GSGEEAVALV EDLQKQPVKA WPQDVPSEGA EPEAAVQGSQ 151 200 ENSP00000380087/1-459 ATGPPPTVGA RRRPSVPQEQ HSHSAQPPAL LKEGRPGETT DTCFVSGVH- ENSTTRP00000003819/1-451 AQGPPRKAGT QSRPPVPWEQ HSHGXXXXXX XXXXXXXXXX XXXXXXX--- ENSBTAP00000037355/1-465 AQGPPWRAGT RSRPPVPWEP HSRGAQLPA- LKQGSTRETT DTCFASGVSY bmy_02755T0/1-430 AQGPPRKAGT RSRPPVPWEQ HSHGAQLPAL LKEGSTRETT DTCFASG--- BACU009176/1-854 AQGPPRKAGT RSRPPVPWEQ HSHGAQLPAL LKEGSTRETT DTCFASG--- 201 250 ENSP00000380087/1-459 ------GPVA LGDIPFYFSR EEWGTLDPAQ RDLFWDIKRE NSRNTTLGFG ENSTTRP00000003819/1-451 -------XXX XXTLDIFYSR EEWGSLDPAQ RDLFWDIKRE NSQNIALGLG ENSBTAP00000037355/1-465 PSLCPLGPVT FGDIPFYFSR EEWGSLDPAQ RDLFWDIKRE NSRNVALGLG bmy_02755T0/1-430 --------VT L--------- ----SLEPRG TE-------E ATSSPLAGLG BACU009176/1-854 ------GPVT FGDIPFYFSR EEWGSLDPAQ RDLFWDIKRE NSQNVALGLG 251 300 ENSP00000380087/1-459 LKGQSEKSLL QEMVPVVPGQ TGSDVTVSWS PEEAEAWESE NRPRA----- ENSTTRP00000003819/1-451 LTSHSERSRL EEVVTALPGQ AAGDVTVSWR LEEAE----- ARPGV----- ENSBTAP00000037355/1-465 HRSHSEKSRL EEVVTALPDQ AAGNETASWR PEEAEAWEGG ARPGA----- bmy_02755T0/1-430 LTSHSERSRL EEVVTALPGQ AAGDVTVSWR LEEAE----- ARPGA----- BACU009176/1-854 LTSHSERSRL EEVVTALPGQ AAGDVTVSWR LEEAE----- ARPGAXXXXX 301 350 ENSP00000380087/1-459 ---------- -ALGPVVGAR RGRPPTRRRQ FRDLAAEKPH SCGQCGKRFR ENSTTRP00000003819/1-451 ---------- -PRGRAAGAR RGRPPTRRRQ FRDLAAEKPH SCGQCGKRFR ENSBTAP00000037355/1-465 ---------- -PRGRVVGAR RGRPPTHRRQ LRDLAAEKPH SCGQCGKRFR bmy_02755T0/1-430 ---------- -PRGRAAGAR RGRPPTRRRQ FRDLAAEKPH SCGQCGKRFR BACU009176/1-854 XXXXXXXXXX XXXXXXXXXX XXRPPSRRRQ FRDLAAEKPH SCGQCGKRFR 351 400 ENSP00000380087/1-459 WGSDLARHQR THTGEKPHKC PECDKSFRSS SDLVRHQGVH TGEKPFSCSE ENSTTRP00000003819/1-451 WGSDLARHQR THTGEKPHKC QECDKSFRSS SDLVRHQGVH TGQKPFSCSE ENSBTAP00000037355/1-465 WGSDLARHQR THTGEKPHKC QECDKSFRSS SDLVRHQGVH TGQKPFSCTQ bmy_02755T0/1-430 WGSDLARHQR THTGEKPHKC QECDKSFRSS SDLVRHQGVH TGQKPFSCSE BACU009176/1-854 WGSDLARHQR THTGEKPHKC QECDKSFRSS SDLVRHQGVH TGQKPFSCSE 401 450 ENSP00000380087/1-459 CGKSFSRSAY LADHQRIHTG EKPFGCSDCG KSFSLRSYLL DHRRVHTGER ENSTTRP00000003819/1-451 CGKSFSRSAY LADHQRIHTG EKPFGCSDCG KSFSLRSYLL DHRRVHTGER ENSBTAP00000037355/1-465 CGKSFSRSAY LADHQRIHTG EKPFGCSDCG KSFSLRSYLL DHRRVHTGER bmy_02755T0/1-430 CGKSFSRSAY LADHQRIHTG EKPFGCSDCG KSFSLRSYLL DHRRVHTGER BACU009176/1-854 CGKSFSRSAY LADHQRIHTG EKPFGCSDCG KSFSLRSYLL DHRRVHTGER 451 500 ENSP00000380087/1-459 PFGCGECDKS FKQRAHLIAH QSLHAKMAQP VG-------- ---------- ENSTTRP00000003819/1-451 PFGCGECDKS FKQRAHLIAH QSLHAKMAQP VG-------- ---------- ENSBTAP00000037355/1-465 PFGCGECDKS FKQRAHLIAH QSLHAKMAQP VG-------- ---------- bmy_02755T0/1-430 PFGCGECDKS FKQRAHLIAH QSLHAKMAQP VG-------- ---------- BACU009176/1-854 PFGCGECDKS FKQRAHLIAH QSLHAKMAQP VGAQGCWRGT HTLPWLWLWL 501 550 ENSP00000380087/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003819/1-451 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037355/1-465 ---------- ---------- ---------- ---------- ---------- bmy_02755T0/1-430 ---------- ---------- ---------- ---------- ---------- BACU009176/1-854 RAPPATPSPT DVLHIYADML GSFSRGPTPG SPNQADILMV YAATEAFRDE 551 600 ENSP00000380087/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003819/1-451 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037355/1-465 ---------- ---------- ---------- ---------- ---------- bmy_02755T0/1-430 ---------- ---------- ---------- ---------- ---------- BACU009176/1-854 KGSDFIQTLV EVLRADPRGD LLELMTETAP YAGLGSSGCV SPSDLTLNLQ 601 650 ENSP00000380087/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003819/1-451 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037355/1-465 ---------- ---------- ---------- ---------- ---------- bmy_02755T0/1-430 ---------- ---------- ---------- ---------- ---------- BACU009176/1-854 LRSSGRLGDP EGAGPSRTPP CPVPLGPGAS PAHRPPKSPP RLVGMEEGAG 651 700 ENSP00000380087/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003819/1-451 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037355/1-465 ---------- ---------- ---------- ---------- ---------- bmy_02755T0/1-430 ---------- ---------- ---------- ---------- ---------- BACU009176/1-854 PLVEAALRVH LRDWTPDPRT PSLTSPSPCG YRDRNFPQVP SSGAENPASS 701 750 ENSP00000380087/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003819/1-451 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037355/1-465 ---------- ---------- ---------- ---------- ---------- bmy_02755T0/1-430 ---------- ---------- ---------- ---------- ---------- BACU009176/1-854 PDVGVWVTEY REPSSSFWLF GLRFCADNAI PPFSCDVTPL LKLFCSDTHL 751 800 ENSP00000380087/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003819/1-451 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037355/1-465 ---------- ---------- ---------- ---------- ---------- bmy_02755T0/1-430 ---------- ---------- ---------- ---------- ---------- BACU009176/1-854 NEVMILTEGA LIMSTPFVCI VVSYIHITCA VLRVPSTKGR WKAFSTCGSH 801 850 ENSP00000380087/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003819/1-451 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037355/1-465 ---------- ---------- ---------- ---------- ---------- bmy_02755T0/1-430 ---------- ---------- ---------- ---------- ---------- BACU009176/1-854 LAVVSFFYGT IIAVYFNPLS SHSSEKDTTA TVVYTVVTPM LNPFIYSVRN 851 900 ENSP00000380087/1-459 ---------- -------- ENSTTRP00000003819/1-451 ---------- -------- ENSBTAP00000037355/1-465 ---------- -------- bmy_02755T0/1-430 ---------- -------- BACU009176/1-854 RDLKRTLGKV VGRKTFSV